KCC001549A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001549A_C01 KCC001549A_c01
cacgacgtccttctctatatatgcctctgcctttgCACTTGCATAGAGCAAGTCACAGAC
AGAGTTGTCTTGCTTCTTTCACGAACTTCTTCACTCTTGAGCCTCACCCAGCCTAGCCCG
CCCTATTAGCGGTCTAGTGCAACCTTCTTTCATCTTCGCCTCGAGGATCTAGCTCAGGAT
CTAGGCAAAAGCTTCCGCGATGGCACTGCAAGCCTCAACCCGCTCGCTCCAGCAGCGCCG
CGCCTTCTCTTCGGCCCAGACCTCCAAGCGTGTGTCTGTGACCAAGGTCCGCGCGACGGC
TATCGAGGCGGAGAACTATGTGAAGCAGGCTCCCCAGTCGCTGGTCCGCCCGGGCATCGA
CACTGAGGACTCTATGCGCGCTCGCTTCGAGAAGGTGATCCGCAACGCCCAGGACTCCAT
CTGCAATGCTATCTCCGAGATCGATGGCAAGCCGTTCCACCAGGACGCCTGGACCCGCCC
CGGCGGCGGTGGCGGCATCAGCCGCGTGCTGCAGGACGGCAACGTGTGGGAGAAGGCCGG
CGTCAACGTGTCCGTGGTCTACGGCACCATGCCCCCTGAGGCCTACCGCGCTGCCACTGG
CAACGCCGAGAAGCTGAAGAACAAGGGTGACGGTGGCCGCGTGCCCTTCTTCGCCGCCGG
CATCTCGTCGGTGATGCACCCCCGCAACCCCCACTGCCCCACCATGCACTTCAACTACCG
CTACTTCGAGACTGAGGAGTGGAACGGCATCCCCGGCCAGTGGTGGTTCGGCGGCGGCAC
CGACATCACCCCCAGCTATGTGGTGCCCGAGGACATGAAGCACTTCCACGGCACCTACAA
GGCGGTGTGCGACCGCCACGATCCCGCTTACTACGAGAAGTTCCGCACCTGGTGCGATGA
GTACTTCCTCATCAAGCACCGCGGCGAGCGCCGCGGCCTGGGCGGCATCTTCTTCGATGA
CCTGAACGACCGCAACCCCGAGGACATCCTGAAGTTCTCGACCGACGCCGTGAACAACGT
GGTGGAGGCATACTGCCCCATCATCAAGAAGCACATGAACGACCCCTACACCCCCGAGGA
GAAGGAGTGGCAGCAGATCCGCCGCGGCCGCTACGTGGAGTTCAACCTGGTCTATGACCG
CGGCACCACCTTCGGCCTGAAGACCGGCGGCCGCATTGAGTCGATCCTCATGTCCATGCC
CCAGACCGCCTCATGGCTGTACGACCACCAGCCCAAGGCCGGCTCGCCCGAGGGCGAGCT
GCTCGACGCCTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001549A_C01 KCC001549A_c01
         (1272 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD28474.1|AF133671_1 coproporphyrinogen III oxidase precurso...   749  0.0
sp|P35055|HEM6_SOYBN Coproporphyrinogen III oxidase, chloroplast...   434  e-120
pir||S39523 coproporphyrinogen oxidase (EC 1.3.3.3) precursor - ...   433  e-120
sp|Q9LR75|HEM6_ARATH Coproporphyrinogen III oxidase, chloroplast...   429  e-119
gb|AAO72663.1| coproporphyrinogen III oxidase [Oryza sativa (jap...   419  e-116

>gb|AAD28474.1|AF133671_1 coproporphyrinogen III oxidase precursor [Chlamydomonas reinhardtii]
            gi|4731370|gb|AAD28475.1|AF133672_1 coproporphyrinogen
            III oxidase precursor [Chlamydomonas reinhardtii]
          Length = 365

 Score =  749 bits (1933), Expect = 0.0
 Identities = 356/357 (99%), Positives = 356/357 (99%)
 Frame = +2

Query: 200  MALQASTRSLQQRRAFSSAQTSKRVSVTKVRATAIEAENYVKQAPQSLVRPGIDTEDSMR 379
            MALQASTRSLQQRRAFSSAQTSKRVSVTKVRATAIEAENYVKQAPQSLVRPGIDTEDSMR
Sbjct: 1    MALQASTRSLQQRRAFSSAQTSKRVSVTKVRATAIEAENYVKQAPQSLVRPGIDTEDSMR 60

Query: 380  ARFEKVIRNAQDSICNAISEIDGKPFHQDAWTRPGGGGGISRVLQDGNVWEKAGVNVSVV 559
            ARFEKVIRNAQDSICNAISEIDGKPFHQDAWTRPGGGGGISRVLQDGNVWEKAGVNVSVV
Sbjct: 61   ARFEKVIRNAQDSICNAISEIDGKPFHQDAWTRPGGGGGISRVLQDGNVWEKAGVNVSVV 120

Query: 560  YGTMPPEAYRAATGNAEKLKNKGDGGRVPFFAAGISSVMHPRNPHCPTMHFNYRYFETEE 739
            YGTMPPEAYRAATGNAEKLKNKGDGGRVPFFAAGISSVMHPRNPHCPTMHFNYRYFETEE
Sbjct: 121  YGTMPPEAYRAATGNAEKLKNKGDGGRVPFFAAGISSVMHPRNPHCPTMHFNYRYFETEE 180

Query: 740  WNGIPGQWWFGGGTDITPSYVVPEDMKHFHGTYKAVCDRHDPAYYEKFRTWCDEYFLIKH 919
            WNGIPGQWWFGGGTDITPSYVVPEDMKHFHGTYKAVCDRHDPAYYEKFRTWCDEYFLIKH
Sbjct: 181  WNGIPGQWWFGGGTDITPSYVVPEDMKHFHGTYKAVCDRHDPAYYEKFRTWCDEYFLIKH 240

Query: 920  RGERRGLGGIFFDDLNDRNPEDILKFSTDAVNNVVEAYCPIIKKHMNDPYTPEEKEWQQI 1099
            RGERRGLGGIFFDDLNDRNPEDILKFSTDAVNNVVEAYCPIIKKHMNDPYTPEEKEWQQI
Sbjct: 241  RGERRGLGGIFFDDLNDRNPEDILKFSTDAVNNVVEAYCPIIKKHMNDPYTPEEKEWQQI 300

Query: 1100 RRGRYVEFNLVYDRGTTFGLKTGGRIESILMSMPQTASWLYDHQPKAGSPEGELLDA 1270
            RRGRYVEFNLVYDRGTTFGLKTGGRIESILMSMPQTASWLYDHQPKAGSPE ELLDA
Sbjct: 301  RRGRYVEFNLVYDRGTTFGLKTGGRIESILMSMPQTASWLYDHQPKAGSPEAELLDA 357

>sp|P35055|HEM6_SOYBN Coproporphyrinogen III oxidase, chloroplast precursor
            (Coproporphyrinogenase) (Coprogen oxidase)
            gi|414666|emb|CAA50400.1| coproporphyrinogen oxidase
            [Glycine max] gi|414667|emb|CAA50401.1|
            coproporphyrinogen oxidase [Glycine max]
          Length = 385

 Score =  434 bits (1116), Expect = e-120
 Identities = 216/365 (59%), Positives = 267/365 (72%), Gaps = 21/365 (5%)
 Frame = +2

Query: 239  RAFSSAQTSKRVSVTK-------------VRAT-AIEAENYVKQAPQSLVRPGID---TE 367
            R+ S++ T   +S+TK             VRAT +IE E      P++ +R G+D   + 
Sbjct: 18   RSGSASTTPTAISLTKRSWKPPPSMAKGPVRATVSIEKETPEANRPETFLR-GVDEAQSS 76

Query: 368  DSMRARFEKVIRNAQDSICNAISEIDG-KPFHQDAWTRPGGGGGISRVLQDGNVWEKAGV 544
             S+RARFEK+IR AQD++C+A+   DG   F +D W+RPGGGGGISRVLQDG VWEKAGV
Sbjct: 77   TSVRARFEKMIREAQDTVCSALEAADGGAQFKEDVWSRPGGGGGISRVLQDGAVWEKAGV 136

Query: 545  NVSVVYGTMPPEAYRAATGNAEKLKNKGDGGRVPFFAAGISSVMHPRNPHCPTMHFNYRY 724
            NVSVVYG MPP+AYRAA G     K     G VPFFAAGISSV+HP+NP  PT+HFNYRY
Sbjct: 137  NVSVVYGVMPPDAYRAAKGVPTDQKP----GPVPFFAAGISSVLHPKNPFAPTLHFNYRY 192

Query: 725  FETE---EWNGIPGQWWFGGGTDITPSYVVPEDMKHFHGTYKAVCDRHDPAYYEKFRTWC 895
            FET+   +  G P QWWFGGGTD+TP+Y+  ED+KHFH   K  CD+ +P +Y +F+ WC
Sbjct: 193  FETDAPKDAPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSIQKQACDKFEPTFYPRFKKWC 252

Query: 896  DEYFLIKHRGERRGLGGIFFDDLNDRNPEDILKFSTDAVNNVVEAYCPIIKKHMNDPYTP 1075
            D+YF IKHRGERRGLGGIFFDDLND + E +L F+T+  N+V+ AY PII+K  + P+  
Sbjct: 253  DDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFATECANSVIPAYLPIIEKRKDLPFND 312

Query: 1076 EEKEWQQIRRGRYVEFNLVYDRGTTFGLKTGGRIESILMSMPQTASWLYDHQPKAGSPEG 1255
             +K WQQ+RRGRYVEFNLVYDRGTTFGLKTGGRIESIL+S+P TA W YDH+P+ GS E 
Sbjct: 313  HQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEW 372

Query: 1256 ELLDA 1270
            +LLDA
Sbjct: 373  KLLDA 377

>pir||S39523 coproporphyrinogen oxidase (EC 1.3.3.3) precursor - soybean
          Length = 385

 Score =  433 bits (1113), Expect = e-120
 Identities = 215/365 (58%), Positives = 267/365 (72%), Gaps = 21/365 (5%)
 Frame = +2

Query: 239  RAFSSAQTSKRVSVTK-------------VRAT-AIEAENYVKQAPQSLVRPGID---TE 367
            R+ S++ T   +S+TK             +RAT +IE E      P++ +R G+D   + 
Sbjct: 18   RSGSASTTPTAISLTKRSWKPPPSMAKGPLRATVSIEKETPEANRPETFLR-GVDEAQSS 76

Query: 368  DSMRARFEKVIRNAQDSICNAISEIDG-KPFHQDAWTRPGGGGGISRVLQDGNVWEKAGV 544
             S+RARFEK+IR AQD++C+A+   DG   F +D W+RPGGGGGISRVLQDG VWEKAGV
Sbjct: 77   TSVRARFEKMIREAQDTVCSALEAADGGAQFKEDVWSRPGGGGGISRVLQDGAVWEKAGV 136

Query: 545  NVSVVYGTMPPEAYRAATGNAEKLKNKGDGGRVPFFAAGISSVMHPRNPHCPTMHFNYRY 724
            NVSVVYG MPP+AYRAA G     K     G VPFFAAGISSV+HP+NP  PT+HFNYRY
Sbjct: 137  NVSVVYGVMPPDAYRAAKGVPTDQKP----GPVPFFAAGISSVLHPKNPFAPTLHFNYRY 192

Query: 725  FETE---EWNGIPGQWWFGGGTDITPSYVVPEDMKHFHGTYKAVCDRHDPAYYEKFRTWC 895
            FET+   +  G P QWWFGGGTD+TP+Y+  ED+KHFH   K  CD+ +P +Y +F+ WC
Sbjct: 193  FETDAPKDAPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSIQKQACDKFEPTFYPRFKKWC 252

Query: 896  DEYFLIKHRGERRGLGGIFFDDLNDRNPEDILKFSTDAVNNVVEAYCPIIKKHMNDPYTP 1075
            D+YF IKHRGERRGLGGIFFDDLND + E +L F+T+  N+V+ AY PII+K  + P+  
Sbjct: 253  DDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFATECANSVIPAYLPIIEKRKDLPFND 312

Query: 1076 EEKEWQQIRRGRYVEFNLVYDRGTTFGLKTGGRIESILMSMPQTASWLYDHQPKAGSPEG 1255
             +K WQQ+RRGRYVEFNLVYDRGTTFGLKTGGRIESIL+S+P TA W YDH+P+ GS E 
Sbjct: 313  HQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEW 372

Query: 1256 ELLDA 1270
            +LLDA
Sbjct: 373  KLLDA 377

>sp|Q9LR75|HEM6_ARATH Coproporphyrinogen III oxidase, chloroplast precursor
            (Coproporphyrinogenase) (Coprogen oxidase)
            gi|25284538|pir||C86166 protein F21B7.10 [imported] -
            Arabidopsis thaliana gi|9280667|gb|AAF86536.1|AC002560_29
            F21B7.10 [Arabidopsis thaliana]
            gi|14624992|dbj|BAB61876.1| coproporphyrinogen III
            oxidase [Arabidopsis thaliana]
            gi|17221413|emb|CAD12661.1| coproporphyrinogen III
            oxidase [Arabidopsis thaliana]
          Length = 386

 Score =  429 bits (1104), Expect = e-119
 Identities = 206/335 (61%), Positives = 254/335 (75%), Gaps = 9/335 (2%)
 Frame = +2

Query: 293  ATAIEAENYVKQAPQSLVRPGID-----TEDSMRARFEKVIRNAQDSICNAISEIDGKP- 454
            + +IE E    + P + +R   D     +  S+RARFE +IR AQDS+C+AI  I+G P 
Sbjct: 48   SVSIEKEVPETERPFTFLRDSDDVTPSSSSSSVRARFETMIRAAQDSVCDAIEAIEGGPK 107

Query: 455  FHQDAWTRPGGGGGISRVLQDGNVWEKAGVNVSVVYGTMPPEAYRAATGNAEKLKNKGDG 634
            F +D W+RPGGGGGISRVLQDGNV+EKAGVNVSVVYG MPPEAYRAA G+A   K     
Sbjct: 108  FKEDVWSRPGGGGGISRVLQDGNVFEKAGVNVSVVYGVMPPEAYRAAKGSASDQKP---- 163

Query: 635  GRVPFFAAGISSVMHPRNPHCPTMHFNYRYFETEEWNGIPG---QWWFGGGTDITPSYVV 805
            G VPFFAAG+SSV+HP+NP  PT+HFNYRYFET+    +PG   QWWFGGGTD TP+Y+ 
Sbjct: 164  GPVPFFAAGVSSVLHPKNPFAPTLHFNYRYFETDAPKDVPGAPRQWWFGGGTDFTPAYIF 223

Query: 806  PEDMKHFHGTYKAVCDRHDPAYYEKFRTWCDEYFLIKHRGERRGLGGIFFDDLNDRNPED 985
             ED+KHFH   K  CD+ DP++Y +F+ WCD+YF IKHR ERRGLGGIFFDDLND + E 
Sbjct: 224  EEDVKHFHSIQKQACDKFDPSFYPRFKKWCDDYFYIKHRDERRGLGGIFFDDLNDYDQEM 283

Query: 986  ILKFSTDAVNNVVEAYCPIIKKHMNDPYTPEEKEWQQIRRGRYVEFNLVYDRGTTFGLKT 1165
            +L F+T+  N+VV AY PI++K  +  +T + K WQQ+RRGRYVEFNLVYDRGTTFGLKT
Sbjct: 284  LLSFATECANSVVPAYIPIVEKRKDMEFTEQHKAWQQLRRGRYVEFNLVYDRGTTFGLKT 343

Query: 1166 GGRIESILMSMPQTASWLYDHQPKAGSPEGELLDA 1270
            GGRIESIL+S+P +A W YDH+P+ G+ E +LLDA
Sbjct: 344  GGRIESILVSLPLSARWEYDHKPEEGTEEWKLLDA 378

>gb|AAO72663.1| coproporphyrinogen III oxidase [Oryza sativa (japonica
            cultivar-group)]
          Length = 324

 Score =  419 bits (1078), Expect = e-116
 Identities = 198/308 (64%), Positives = 237/308 (76%), Gaps = 8/308 (2%)
 Frame = +2

Query: 371  SMRARFEKVIRNAQDSICNAISEIDGKP--FHQDAWTRPGGGGGISRVLQDGNVWEKAGV 544
            S+R RFE +IR  Q  +C A+ E DG    F +D W+RPGGGGGISRVLQDG V+EKAGV
Sbjct: 7    SVRERFEAMIRRVQGEVCAALEEADGSGARFVEDVWSRPGGGGGISRVLQDGRVFEKAGV 66

Query: 545  NVSVVYGTMPPEAYRAATGNAEKLKNKGDG---GRVPFFAAGISSVMHPRNPHCPTMHFN 715
            NVSVVYG MPP+AYRAA G A K     DG   G VPFFAAGISSV+HP+NP  PT+HFN
Sbjct: 67   NVSVVYGVMPPDAYRAAKGEAGKNGAAADGPKAGPVPFFAAGISSVLHPKNPFAPTLHFN 126

Query: 716  YRYFETE---EWNGIPGQWWFGGGTDITPSYVVPEDMKHFHGTYKAVCDRHDPAYYEKFR 886
            YRYFET+   +  G P QWWFGGGTD+TPSY++ ED+KHFH   K  CD+ DP++Y +F+
Sbjct: 127  YRYFETDAPKDAPGAPRQWWFGGGTDLTPSYIIEEDVKHFHSVQKQACDKFDPSFYPRFK 186

Query: 887  TWCDEYFLIKHRGERRGLGGIFFDDLNDRNPEDILKFSTDAVNNVVEAYCPIIKKHMNDP 1066
             WCD+YF IKHR ERRGLGGIFFDDLND + E +L F+T+  ++VV AY PII++  + P
Sbjct: 187  KWCDDYFYIKHRNERRGLGGIFFDDLNDYDQEMLLNFATECADSVVPAYIPIIERRKDTP 246

Query: 1067 YTPEEKEWQQIRRGRYVEFNLVYDRGTTFGLKTGGRIESILMSMPQTASWLYDHQPKAGS 1246
            +T E K WQQ+RRGRYVEFNLVYDRGTTFGLKTGGRIESIL+S+P TA W Y H P+ G+
Sbjct: 247  FTEEHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWQYYHTPEEGT 306

Query: 1247 PEGELLDA 1270
             E +LLDA
Sbjct: 307  EERKLLDA 314



EST assemble image


clone accession position
1 LCL099h10_r AV631791 1 447
2 MXL072f11_r BP097262 36 272
3 MXL009g11_r BP093538 38 345
4 MX244c01_r BP091782 38 536
5 CM085d08_r AV392387 391 877
6 CM061h01_r AV390641 724 1315
7 MXL012d10_r BP093712 848 1140
8 HC085h02_r AV638395 857 1273




Chlamydomonas reinhardtii
Kazusa DNA Research Institute