KCC001546A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001546A_C01 KCC001546A_c01
aaactattgtgttccaacatacgaccagctgtaactaCTGAAACACCCTAGAGCCCTCCT
GCTGGGACCTCGACCTGAACTGCACAATGACGCCCTTGAACGCTCTCGGAACCAGCGCGA
TGAAGATCTTGGTCGCGGGTATGGAGCTGCCACCAGCGGCTGCGGCATCTGTCGCTGCGA
TGCCTGCAGCTGATGCGGAGGGCGAGCTCGACATGCTCCTGGTTGGGCCGCACGCCAGTG
CTCGCTCTTCTCTGGCACTGCACTTCGCGCTGCACCACTCTGCGGAGTCTGGGCTGCCGG
CGCTGTTCCTGTGTGTCCAGGACGCTGTAGAGCAATCCGTGCCGCTCCTGCCGCACATGT
GCGACACAAGCGACCCTGTCCTCGAGCGTTTGCACATCAAGTACGTGAAGGGCCACCTGG
ACCTGCAGCGCTTCGGCTGCTGCCTGCACATGCTTCAGGCCGCCTACTCGGCCGTGGTGG
TGGAGGACATGAGTGGTGTCATCAAGATCGACGACCGTAACACCCTTATTCGCACTCTTG
CGCTTCTAGTGGACGGAATGCAAGCTTACAGAGCAGCGCGTCAGTTGCGATGCCCGCTCC
TGTCACTGACTCGAGTGACGAGCGGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001546A_C01 KCC001546A_c01
         (627 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvir...    45  7e-04
pir||T13049 eyelid - fruit fly (Drosophila melanogaster) gi|2981...    45  9e-04
ref|NP_338307.1| hypothetical protein [Mycobacterium tuberculosi...    45  9e-04
ref|NP_524392.2| osa CG7467-PB [Drosophila melanogaster] gi|3330...    45  9e-04
ref|NP_732263.1| osa CG7467-PA [Drosophila melanogaster] gi|7300...    45  9e-04

>dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvirus 1]
          Length = 3326

 Score = 45.4 bits (106), Expect = 7e-04
 Identities = 41/135 (30%), Positives = 48/135 (35%), Gaps = 10/135 (7%)
 Frame = -1

Query: 498  HHSCPPPPRPSRRPEACAGSSRSAAGPGGPSRT*CANARGQGRLCRTCAAGAARIAL--- 328
            H   PPPP PS RP    G   +AA P  P        R   R     A    R++L   
Sbjct: 2703 HPPDPPPPDPSPRPNE-LGGGETAAAPSAPDPPPPQTVRAPERPRDDRAPAPGRVSLPRR 2761

Query: 327  -QRPGHTGTAPAAQTPQSGAARSAVPEKSEHWRAAQPGACRARP------PHQLQASQRQ 169
              R G    +   Q P+  AAR AV   +       PG     P      PH   AS   
Sbjct: 2762 ASRQGRPAPSSPLQRPRRRAARPAVGSLTNLADPHPPGPETPTPTSPTANPHATTASATP 2821

Query: 168  MPQPLVAAPYPRPRS 124
             P P+ A    RP S
Sbjct: 2822 APPPVAATGPTRPTS 2836

 Score = 32.3 bits (72), Expect = 5.8
 Identities = 42/154 (27%), Positives = 56/154 (36%), Gaps = 4/154 (2%)
 Frame = -1

Query: 483  PPPRPSRRPEACAGSSRSAAGPGGPSRT*CANARGQGRLCRTCAAGAARIALQRPGHTGT 304
            PPPRP+ RP   A  SR A  P  P ++       + R  R      A  +   P     
Sbjct: 2648 PPPRPAPRPSEPAVQSR-ARRPDAPPQS------ARPRTPRDDPGPPAAPSTLPPSPPPP 2700

Query: 303  APAAQTPQSGAARSAVPEKSEHWRAAQPGACRARPPHQLQASQRQMPQPLVAAPYP---- 136
            AP    P          E      AA P A    PP  ++A +R        AP P    
Sbjct: 2701 APHPPDPPPPDPSPRPNELGGGETAAAPSAPDPPPPQTVRAPERPRDD---RAPAPGRVS 2757

Query: 135  RPRSSSRWFRERSRASLCSSGRGPSRRALGCFSS 34
             PR +SR  R    + L    R  +R A+G  ++
Sbjct: 2758 LPRRASRQGRPAPSSPLQRPRRRAARPAVGSLTN 2791

>pir||T13049 eyelid - fruit fly (Drosophila melanogaster)
            gi|2981221|gb|AAC06254.1| eyelid [Drosophila
            melanogaster]
          Length = 2715

 Score = 45.1 bits (105), Expect = 9e-04
 Identities = 34/128 (26%), Positives = 47/128 (36%), Gaps = 8/128 (6%)
 Frame = -1

Query: 486  PPPPRPSRRPEACAGSSRSAAGP-------GGPSRT*CANARGQGRLCRTCAAGAARIAL 328
            P  P P       AG + S + P       GG   +      GQG      + GA  +  
Sbjct: 1191 PQTPHPGAAAAVAAGDNISVSNPFEDPIAAGGGPGSGTGPGPGQGPGPGAASGGAGAVGA 1250

Query: 327  QRPGHTGTAPAAQTPQSGAARSAVPEKSEHWRAAQPGACRARPPHQLQASQRQMPQPLV- 151
               G     P   +P + A ++A   + +H +   PG     PP Q Q  Q Q P P V 
Sbjct: 1251 VGGGPQPHPPPPHSPHTAAQQAAGQHQQQHPQHQHPGLPGPPPPQQQQGQQGQQPPPSVG 1310

Query: 150  AAPYPRPR 127
              P P P+
Sbjct: 1311 GGPPPAPQ 1318

>ref|NP_338307.1| hypothetical protein [Mycobacterium tuberculosis CDC1551]
           gi|13883628|gb|AAK48121.1| hypothetical protein
           [Mycobacterium tuberculosis CDC1551]
          Length = 305

 Score = 45.1 bits (105), Expect = 9e-04
 Identities = 42/122 (34%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
 Frame = -1

Query: 492 SCPPPPRPSRRPEACAGSSRSAAGPGGPSRT*CANARGQGRLCRTCAAGAARIALQRPG- 316
           S PP P+P  RP A  G  R  AGP  PS    A      R        A+R+A   P  
Sbjct: 169 STPPSPQPDTRP-ARQGWLRRLAGPRHPSALAAAPGVADAR------GAASRLAPVPPTG 221

Query: 315 -HTGTAPAAQTPQSGAARSAVPEKSEHW------RAAQPGACRARPPHQ---LQASQRQM 166
            H  T P   TP         P  S+HW      R  QPGA + +P HQ     AS++Q 
Sbjct: 222 RHRATTPWPATP---------PPHSQHWPIGDPVRPQQPGAGQCQPDHQQPSAHASRQQK 272

Query: 165 PQ 160
            Q
Sbjct: 273 AQ 274

>ref|NP_524392.2| osa CG7467-PB [Drosophila melanogaster]
            gi|33301341|sp|Q8IN94|OSA_DROME Trithorax group protein
            OSA (Eyelid protein) gi|23171573|gb|AAN13750.1| CG7467-PB
            [Drosophila melanogaster]
          Length = 2716

 Score = 45.1 bits (105), Expect = 9e-04
 Identities = 34/128 (26%), Positives = 47/128 (36%), Gaps = 8/128 (6%)
 Frame = -1

Query: 486  PPPPRPSRRPEACAGSSRSAAGP-------GGPSRT*CANARGQGRLCRTCAAGAARIAL 328
            P  P P       AG + S + P       GG   +      GQG      + GA  +  
Sbjct: 1192 PQTPHPGAAAAVAAGDNISVSNPFEDPIAAGGGPGSGTGPGPGQGPGPGAASGGAGAVGA 1251

Query: 327  QRPGHTGTAPAAQTPQSGAARSAVPEKSEHWRAAQPGACRARPPHQLQASQRQMPQPLV- 151
               G     P   +P + A ++A   + +H +   PG     PP Q Q  Q Q P P V 
Sbjct: 1252 VGGGPQPHPPPPHSPHTAAQQAAGQHQQQHPQHQHPGLPGPPPPQQQQGQQGQQPPPSVG 1311

Query: 150  AAPYPRPR 127
              P P P+
Sbjct: 1312 GGPPPAPQ 1319

>ref|NP_732263.1| osa CG7467-PA [Drosophila melanogaster] gi|7300295|gb|AAF55457.1|
            CG7467-PA [Drosophila melanogaster]
          Length = 2703

 Score = 45.1 bits (105), Expect = 9e-04
 Identities = 34/128 (26%), Positives = 47/128 (36%), Gaps = 8/128 (6%)
 Frame = -1

Query: 486  PPPPRPSRRPEACAGSSRSAAGP-------GGPSRT*CANARGQGRLCRTCAAGAARIAL 328
            P  P P       AG + S + P       GG   +      GQG      + GA  +  
Sbjct: 1179 PQTPHPGAAAAVAAGDNISVSNPFEDPIAAGGGPGSGTGPGPGQGPGPGAASGGAGAVGA 1238

Query: 327  QRPGHTGTAPAAQTPQSGAARSAVPEKSEHWRAAQPGACRARPPHQLQASQRQMPQPLV- 151
               G     P   +P + A ++A   + +H +   PG     PP Q Q  Q Q P P V 
Sbjct: 1239 VGGGPQPHPPPPHSPHTAAQQAAGQHQQQHPQHQHPGLPGPPPPQQQQGQQGQQPPPSVG 1298

Query: 150  AAPYPRPR 127
              P P P+
Sbjct: 1299 GGPPPAPQ 1306



EST assemble image


clone accession position
1 LC014a07_r AV619849 1 534
2 CM061e05_r AV390586 38 627




Chlamydomonas reinhardtii
Kazusa DNA Research Institute