KCC001545A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001545A_C01 KCC001545A_c01
cacggcgctgcttagcaacggagccgccgtgacactcatgtaccccatcgcccgcgacct
tgcaaagcaggccggcgtgaGCATCAAGGGGCCGCTCTACGCGCTAATGATCGGCGCCTC
GTCCGACTTCTCCACGCCCATCGGCTACCAGACGAACCTGATGGTCAGCGGTCCCGGCGG
GTACCGCTTCCTGGACTTCACGCGGTTCGGGCTGCCGCTGCAGTTCGTTGCGGCCCTCAT
CACCGTGCCCATCTGTGTCCTGTACTTTGAACCCCGTACTTAGTAGCAGCCGAGGGTCTA
GCGGGCACGCGGTCGCTTGGAGCAGTATTGGCTTGAAGCCCGGGAACCTAGCAGAGAGGC
GCGAACAGAGCAGCAGGGGAACAGCTGCTTGCATGGCGGTGTGGTGCTGTACTGATATTA
TAGGATGGATGTTAACGGTAGAGAGGAGGTTCGGGAGTTGGCGCTAGGCAGGAGGCGAAG
GGAGCACGCGGCCCATGTCGTGCGCGCGAGCGTGGGGGCTCGGCCCTGCTCATCCTTTCG
GTGTGCATCTGTACTGTAGGACTGGAAACAGGCGATGCGTTGCACACGTGTGCGGTGTAC
TGTATGCTGCGGATTCCTTGCGTCCGCTATGTCTAGTGGAATGGCATGTGCACTGATTTC
GCGTTCTGTGTGCTGGAGGATTGCGGTCCGCAAAACGGCGACGCAGCGATCGCGAGGAGG
AGGCTGGCTTCAAGCGTGCCCGCCAATGAAGCCCCCCATCCATGCTTGGCACGTGCTTAA
GTGGGGCAGCTCTAGGGCTGAAGTGCTCTAGGTGGTGACGAAAGTGCACGGGTATTGAAC
GGGATGTTTGCGGGCGAGTGATGGAGATGGGCATGGTCTGACGGnCCTTGGGCCGTAGAC
TCGGGTGTGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001545A_C01 KCC001545A_c01
         (910 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q39593|SAC1_CHLRE Putative sulfur deprivation response regula...   186  4e-46
ref|ZP_00005560.1| COG0471: Di- and tricarboxylate transporters ...    86  1e-15
ref|NP_785011.1| sodium/sulfate symport protein (putative) [Lact...    84  3e-15
ref|NP_440296.1| sulfur deprivation response regulator [Synechoc...    83  6e-15
ref|NP_692581.1| sulfur deprivation response regulator [Oceanoba...    83  6e-15

>sp|Q39593|SAC1_CHLRE Putative sulfur deprivation response regulator
           gi|2129463|pir||S69216 sulfur deprivation response
           regulator sac1 - Chlamydomonas reinhardtii
           gi|1197733|gb|AAB08008.1| sulfur deprivation response
           regulator
          Length = 585

 Score =  186 bits (473), Expect = 4e-46
 Identities = 93/93 (100%), Positives = 93/93 (100%)
 Frame = +2

Query: 2   TALLSNGAAVTLMYPIARDLAKQAGVSIKGPLYALMIGASSDFSTPIGYQTNLMVSGPGG 181
           TALLSNGAAVTLMYPIARDLAKQAGVSIKGPLYALMIGASSDFSTPIGYQTNLMVSGPGG
Sbjct: 493 TALLSNGAAVTLMYPIARDLAKQAGVSIKGPLYALMIGASSDFSTPIGYQTNLMVSGPGG 552

Query: 182 YRFLDFTRFGLPLQFVAALITVPICVLYFEPRT 280
           YRFLDFTRFGLPLQFVAALITVPICVLYFEPRT
Sbjct: 553 YRFLDFTRFGLPLQFVAALITVPICVLYFEPRT 585

>ref|ZP_00005560.1| COG0471: Di- and tricarboxylate transporters [Rhodobacter
           sphaeroides]
          Length = 592

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
 Frame = +2

Query: 2   TALLSNGAAVTLMYPIARDLAKQAGVSIKGPLYALMIGASSDFSTPIGYQTNLMVSGPGG 181
           T LLSN A   ++ P+A +LA++ GV  +  L A+M+GAS  F+TPIGYQ NL+V GPGG
Sbjct: 502 TELLSNNAVAVVVTPVAIELAQRLGVDPRPILVAVMMGASFGFATPIGYQCNLLVYGPGG 561

Query: 182 YRFLDFTRFGLPLQF---VAALITVPI 253
           Y F DF R G+PL     VAA I +P+
Sbjct: 562 YTFGDFLRIGVPLNVLMGVAAAIVIPL 588

>ref|NP_785011.1| sodium/sulfate symport protein (putative) [Lactobacillus plantarum
           WCFS1] gi|28270954|emb|CAD63858.1| sodium/sulfate
           symport protein (putative) [Lactobacillus plantarum
           WCFS1]
          Length = 591

 Score = 84.0 bits (206), Expect = 3e-15
 Identities = 38/89 (42%), Positives = 59/89 (65%)
 Frame = +2

Query: 2   TALLSNGAAVTLMYPIARDLAKQAGVSIKGPLYALMIGASSDFSTPIGYQTNLMVSGPGG 181
           TA+LSN AA++LM+P+    AK   + +   +  + I A++DFSTPIGYQTNL+V GPG 
Sbjct: 500 TAILSNAAALSLMFPVVVSAAKLENLPVMMLVMLITIAATADFSTPIGYQTNLIVYGPGH 559

Query: 182 YRFLDFTRFGLPLQFVAALITVPICVLYF 268
           Y+F D+ + G+PL  +  ++ V +   Y+
Sbjct: 560 YKFTDYFKVGIPLNLICMVVCVFVSYYYY 588

>ref|NP_440296.1| sulfur deprivation response regulator [Synechocystis sp. PCC 6803]
           gi|2499531|sp|P72958|Y640_SYNY3 Hypothetical protein
           sll0640 gi|7470869|pir||S74936 sulfur deprivation
           response regulator sac1 - Synechocystis sp. (strain PCC
           6803) gi|1652051|dbj|BAA16976.1| sulfur deprivation
           response regulator [Synechocystis sp. PCC 6803]
          Length = 612

 Score = 83.2 bits (204), Expect = 6e-15
 Identities = 41/89 (46%), Positives = 55/89 (61%)
 Frame = +2

Query: 2   TALLSNGAAVTLMYPIARDLAKQAGVSIKGPLYALMIGASSDFSTPIGYQTNLMVSGPGG 181
           T +LSN A V LM PIA  +A+  G++    ++ +   AS+ F +PIGYQTN MV GPGG
Sbjct: 518 TEILSNNATVVLMLPIAFQVAQSLGLNPLAFMFVVTFAASNSFMSPIGYQTNTMVYGPGG 577

Query: 182 YRFLDFTRFGLPLQFVAALITVPICVLYF 268
           YRF DF R G PL  +  L T  + +L +
Sbjct: 578 YRFTDFARIGAPLTVILTLATPLLVMLIY 606

>ref|NP_692581.1| sulfur deprivation response regulator [Oceanobacillus iheyensis
           HTE831] gi|22777343|dbj|BAC13616.1| sulfur deprivation
           response regulator [Oceanobacillus iheyensis HTE831]
          Length = 588

 Score = 83.2 bits (204), Expect = 6e-15
 Identities = 36/84 (42%), Positives = 55/84 (64%)
 Frame = +2

Query: 2   TALLSNGAAVTLMYPIARDLAKQAGVSIKGPLYALMIGASSDFSTPIGYQTNLMVSGPGG 181
           T +++N AA  LM+P+  ++A+   V   G    + I AS+ F TPIGYQTN++V GPGG
Sbjct: 499 TEIITNSAAAVLMFPVGMEMARNLHVEPMGFAVIIAIAASASFITPIGYQTNMIVYGPGG 558

Query: 182 YRFLDFTRFGLPLQFVAALITVPI 253
           Y+F+D+ + G PL  +  ++TV I
Sbjct: 559 YKFIDYVKIGTPLSLIVMVLTVSI 582



EST assemble image


clone accession position
1 HC054f08_r AV636058 1 418
2 CM061b12_r AV390626 107 681
3 CM098b12_r AV392883 341 808
4 LC042e07_r AV621912 385 910




Chlamydomonas reinhardtii
Kazusa DNA Research Institute