KCC001541A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001541A_C01 KCC001541A_c01
CAGAACACGTATGCCATGCTGTCCACCTTCAACGAGGTGGACATGAGCGCGGCCATCGAG
TTGCGCTCCACCTACAAGGAGACGTTCCTGGAGAAGCACAACGTCAAGTGGGTCATGAGC
GTGTCGTCAAGGCGGCGGCACACGCGCTGCAGGAGGTGCCGTCGGTCAACGCCGTGATTG
AGGGCGATGAGATCATCTTCCGCGACTTTTACGACATCTCCATCGCCGTGGCCACGCCCA
AGGGCCTGGTGGTGCCGGTGCTACGCCGCGCGGACGAGCTCAGCTTCGCCGACGTTGAGA
AGAACATCAACGCGCTGGGCAAGAAGGCGCGCGACGGCACCATCGGCATCGACGACATGG
CCGGCGGCACCTTCACCATCTCCAACGGCGGCGTGTACGGCAGCCTGCTGTCCACGCCCA
TCATCAACCCGCCGCAGTCGGCCATCCTGGGCATGCACGCCATCGTGGACCGGCCAGTGG
TGGTCAAGGGCAAGATTGAGATCCGGCCCATGATGAACATCGCGCTCACGTACGACCATC
GCCTGATCGACGGCCGCGAGGCGGTCACCTTCCTGCGCCGCATCAAGGACGTGGTGGAGG
ACCCGCGCCGCCTGCTGCTGGACATCTAAGAAGACCCGTAGGAACACCCGTGAATCTGTG
ATGGCACACACACGCACACACATCCCGCAGCAGCGGGTGGAGCTTGAGGTGCGGCCTGTG
TGTGCCTACCCGCGGAGCTGCCTTGTGGCGCCGCGGAGCTGCCCTGTGGCGTACGGGTAG
TGGCGGTCAGGACGTTGGGCGTGGTTGCCTGCCGGCGCTCACGCGTCGTGCCGAGTGCCG
AGGCCTGCGGGTGCTGGGTAGTGGTGGGCGGGGGATGTATCAGGTCTGTTGGCGTGAGGC
GTAGGCGCTGCGTTGTTGGAGGAAGAATGGTCATGGGGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001541A_C01 KCC001541A_c01
         (940 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD40552.1| OSJNBa0072K14.5 [Oryza sativa (japonica cultivar...   258  1e-76
ref|NP_200318.1| 2-oxoglutarate dehydrogenase E2 subunit [Arabid...   254  2e-76
emb|CAA11553.1| 2-oxoglutarate dehydrogenase E2 subunit [Arabido...   254  2e-76
pir||T04814 dihydrolipoamide S-succinyltransferase homolog F10M2...   253  2e-75
ref|NP_567761.1| dihydrolipoamide succinyltransferase -related [...   253  2e-75

>emb|CAD40552.1| OSJNBa0072K14.5 [Oryza sativa (japonica cultivar-group)]
          Length = 440

 Score =  258 bits (658), Expect(2) = 1e-76
 Identities = 130/167 (77%), Positives = 145/167 (85%)
 Frame = +3

Query: 126 VKAAAHALQEVPSVNAVIEGDEIIFRDFYDISIAVATPKGLVVPVLRRADELSFADVEKN 305
           VKAA  ALQ  P VNAVI+GD+II+RD+ DIS+AV T KGLVVPV+R AD ++FAD+EK 
Sbjct: 274 VKAAVTALQNQPIVNAVIDGDDIIYRDYVDISVAVGTSKGLVVPVIRDADNMNFADIEKG 333

Query: 306 INALGKKARDGTIGIDDMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHAIVDRPVVV 485
           INAL KKA +G + ID+MAGGTFTISNGGVYGSL+STPIINPPQSAILGMH+IV RPVVV
Sbjct: 334 INALAKKATEGALSIDEMAGGTFTISNGGVYGSLISTPIINPPQSAILGMHSIVQRPVVV 393

Query: 486 KGKIEIRPMMNIALTYDHRLIDGREAVTFLRRIKDVVEDPRRLLLDI 626
            G I  RPMM +ALTYDHRLIDGREAV FLRRIKDVVEDPRRLLLDI
Sbjct: 394 DGNILARPMMYLALTYDHRLIDGREAVYFLRRIKDVVEDPRRLLLDI 440

 Score = 52.0 bits (123), Expect(2) = 1e-76
 Identities = 23/36 (63%), Positives = 30/36 (82%)
 Frame = +1

Query: 1   QNTYAMLSTFNEVDMSAAIELRSTYKETFLEKHNVK 108
           QNT+AML+TFNEVDM+  ++LRS YK+ F+ KH VK
Sbjct: 231 QNTFAMLTTFNEVDMTNLMKLRSDYKDEFVTKHGVK 266

>ref|NP_200318.1| 2-oxoglutarate dehydrogenase E2 subunit [Arabidopsis thaliana]
           gi|9758104|dbj|BAB08576.1| 2-oxoglutarate dehydrogenase
           E2 subunit [Arabidopsis thaliana]
           gi|14596219|gb|AAK68837.1| 2-oxoglutarate dehydrogenase
           E2 subunit [Arabidopsis thaliana]
           gi|22136096|gb|AAM91126.1| 2-oxoglutarate dehydrogenase
           E2 subunit [Arabidopsis thaliana]
          Length = 464

 Score =  254 bits (649), Expect(2) = 2e-76
 Identities = 126/167 (75%), Positives = 146/167 (86%)
 Frame = +3

Query: 126 VKAAAHALQEVPSVNAVIEGDEIIFRDFYDISIAVATPKGLVVPVLRRADELSFADVEKN 305
           +KAA  ALQ  P VNAVI+GD+II+RD+ DISIAV T KGLVVPV+R AD+++FAD+EK 
Sbjct: 298 IKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRDADKMNFADIEKT 357

Query: 306 INALGKKARDGTIGIDDMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHAIVDRPVVV 485
           IN L KKA +GTI ID+MAGG+FT+SNGGVYGSL+STPIINPPQSAILGMH+IV RP+VV
Sbjct: 358 INGLAKKATEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVQRPMVV 417

Query: 486 KGKIEIRPMMNIALTYDHRLIDGREAVTFLRRIKDVVEDPRRLLLDI 626
            G +  RPMM +ALTYDHRLIDGREAV FLRRIKDVVEDP+RLLLDI
Sbjct: 418 GGSVVPRPMMYVALTYDHRLIDGREAVYFLRRIKDVVEDPQRLLLDI 464

 Score = 54.7 bits (130), Expect(2) = 2e-76
 Identities = 24/36 (66%), Positives = 31/36 (85%)
 Frame = +1

Query: 1   QNTYAMLSTFNEVDMSAAIELRSTYKETFLEKHNVK 108
           QNT+A+L+TFNEVDM+  ++LRS YK+ FLEKH VK
Sbjct: 255 QNTFALLTTFNEVDMTNLMKLRSQYKDAFLEKHGVK 290

>emb|CAA11553.1| 2-oxoglutarate dehydrogenase E2 subunit [Arabidopsis thaliana]
          Length = 462

 Score =  254 bits (649), Expect(2) = 2e-76
 Identities = 126/167 (75%), Positives = 146/167 (86%)
 Frame = +3

Query: 126 VKAAAHALQEVPSVNAVIEGDEIIFRDFYDISIAVATPKGLVVPVLRRADELSFADVEKN 305
           +KAA  ALQ  P VNAVI+GD+II+RD+ DISIAV T KGLVVPV+R AD+++FAD+EK 
Sbjct: 296 IKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRDADKMNFADIEKT 355

Query: 306 INALGKKARDGTIGIDDMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHAIVDRPVVV 485
           IN L KKA +GTI ID+MAGG+FT+SNGGVYGSL+STPIINPPQSAILGMH+IV RP+VV
Sbjct: 356 INGLAKKATEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVQRPMVV 415

Query: 486 KGKIEIRPMMNIALTYDHRLIDGREAVTFLRRIKDVVEDPRRLLLDI 626
            G +  RPMM +ALTYDHRLIDGREAV FLRRIKDVVEDP+RLLLDI
Sbjct: 416 GGSVVPRPMMYVALTYDHRLIDGREAVYFLRRIKDVVEDPQRLLLDI 462

 Score = 54.7 bits (130), Expect(2) = 2e-76
 Identities = 24/36 (66%), Positives = 31/36 (85%)
 Frame = +1

Query: 1   QNTYAMLSTFNEVDMSAAIELRSTYKETFLEKHNVK 108
           QNT+A+L+TFNEVDM+  ++LRS YK+ FLEKH VK
Sbjct: 253 QNTFALLTTFNEVDMTNLMKLRSQYKDAFLEKHGVK 288

>pir||T04814 dihydrolipoamide S-succinyltransferase homolog F10M23.250 -
           Arabidopsis thaliana gi|4455214|emb|CAB36537.1| putative
           dihydrolipoamide succinyltransferase [Arabidopsis
           thaliana] gi|7269544|emb|CAB79546.1| putative
           dihydrolipoamide succinyltransferase [Arabidopsis
           thaliana]
          Length = 511

 Score =  253 bits (646), Expect(2) = 2e-75
 Identities = 124/167 (74%), Positives = 147/167 (87%)
 Frame = +3

Query: 126 VKAAAHALQEVPSVNAVIEGDEIIFRDFYDISIAVATPKGLVVPVLRRADELSFADVEKN 305
           +KAA  ALQ  P VNAVI+GD+II+RD+ DISIAV T KGLVVPV+R AD+++FA++EK 
Sbjct: 345 IKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKT 404

Query: 306 INALGKKARDGTIGIDDMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHAIVDRPVVV 485
           IN+L KKA +GTI ID+MAGG+FT+SNGGVYGSL+STPIINPPQSAILGMH+IV RP+VV
Sbjct: 405 INSLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVV 464

Query: 486 KGKIEIRPMMNIALTYDHRLIDGREAVTFLRRIKDVVEDPRRLLLDI 626
            G +  RPMM +ALTYDHRLIDGREAV FLRR+KDVVEDP+RLLLDI
Sbjct: 465 GGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 511

 Score = 52.8 bits (125), Expect(2) = 2e-75
 Identities = 23/36 (63%), Positives = 30/36 (82%)
 Frame = +1

Query: 1   QNTYAMLSTFNEVDMSAAIELRSTYKETFLEKHNVK 108
           QNT+A+L+TFNEVDM+  ++LRS YK+ F EKH VK
Sbjct: 302 QNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVK 337

>ref|NP_567761.1| dihydrolipoamide succinyltransferase -related [Arabidopsis
           thaliana]
          Length = 464

 Score =  253 bits (646), Expect(2) = 2e-75
 Identities = 124/167 (74%), Positives = 147/167 (87%)
 Frame = +3

Query: 126 VKAAAHALQEVPSVNAVIEGDEIIFRDFYDISIAVATPKGLVVPVLRRADELSFADVEKN 305
           +KAA  ALQ  P VNAVI+GD+II+RD+ DISIAV T KGLVVPV+R AD+++FA++EK 
Sbjct: 298 IKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKT 357

Query: 306 INALGKKARDGTIGIDDMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHAIVDRPVVV 485
           IN+L KKA +GTI ID+MAGG+FT+SNGGVYGSL+STPIINPPQSAILGMH+IV RP+VV
Sbjct: 358 INSLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVV 417

Query: 486 KGKIEIRPMMNIALTYDHRLIDGREAVTFLRRIKDVVEDPRRLLLDI 626
            G +  RPMM +ALTYDHRLIDGREAV FLRR+KDVVEDP+RLLLDI
Sbjct: 418 GGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 464

 Score = 52.8 bits (125), Expect(2) = 2e-75
 Identities = 23/36 (63%), Positives = 30/36 (82%)
 Frame = +1

Query: 1   QNTYAMLSTFNEVDMSAAIELRSTYKETFLEKHNVK 108
           QNT+A+L+TFNEVDM+  ++LRS YK+ F EKH VK
Sbjct: 255 QNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVK 290



EST assemble image


clone accession position
1 HC057a04_r AV636246 1 446
2 CM060g01_r AV390736 322 910
3 CM093c11_r AV392998 419 959
4 LC078a03_r AV624454 549 1029




Chlamydomonas reinhardtii
Kazusa DNA Research Institute