Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001539A_C01 KCC001539A_c01
(554 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207620.1| ss-DNA binding protein 12RNP2 precursor [Helico... 64 2e-09
ref|NP_799314.1| RNA-binding protein [Vibrio parahaemolyticus RI... 64 2e-09
pir||S41505 12RNP2 protein - Synechococcus sp. (PCC 6301) gi|961... 63 2e-09
dbj|BAA04177.1| ss-DNA binding protein 12RNP2 precursor [Synecho... 63 3e-09
ref|NP_223484.1| putative [Helicobacter pylori J99] gi|7464827|p... 62 5e-09
>ref|NP_207620.1| ss-DNA binding protein 12RNP2 precursor [Helicobacter pylori 26695]
gi|7465380|pir||C64623 ss-DNA binding protein 12RNP2
precursor - Helicobacter pylori (strain 26695)
gi|2313961|gb|AAD07877.1| ss-DNA binding protein 12RNP2
precursor [Helicobacter pylori 26695]
Length = 82
Score = 63.5 bits (153), Expect = 2e-09
Identities = 29/75 (38%), Positives = 49/75 (64%), Gaps = 1/75 (1%)
Frame = +2
Query: 143 LWVGNLPFKATQEQIQSFFNPYG-ASSVFILRDKETRKNRGMAFVNVDPEKMDAAIREND 319
++VGNL + AT EQ++ F+ +G +V ++ D+ET+K +G FV + E + AI + D
Sbjct: 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLD 63
Query: 320 GKDFMGRALKVAKSN 364
DFMGR ++V ++N
Sbjct: 64 NTDFMGRTIRVTEAN 78
>ref|NP_799314.1| RNA-binding protein [Vibrio parahaemolyticus RIMD 2210633]
gi|28807961|dbj|BAC61198.1| RNA-binding protein [Vibrio
parahaemolyticus]
Length = 151
Score = 63.5 bits (153), Expect = 2e-09
Identities = 38/116 (32%), Positives = 63/116 (53%), Gaps = 4/116 (3%)
Frame = +2
Query: 44 PGSAFALSRTLPTSLFNFSTEAGT--EAEQKPTAR-LWVGNLPFKATQEQIQSFFNPYG- 211
P +F + LF+FS++ + E P+ + L+VGNLP+KA + ++ F YG
Sbjct: 28 PALSFLIGVAATAFLFSFSSQTPSIQPTESDPSTKTLYVGNLPYKANESHVRDLFAEYGQ 87
Query: 212 ASSVFILRDKETRKNRGMAFVNVDPEKMDAAIRENDGKDFMGRALKVAKSNVPDLP 379
+V +++DK T K RG FV + + AI + + +++M R LKV +N P P
Sbjct: 88 VFAVRLMKDKRTGKRRGFGFVVMAAADAEPAIAKLNEREYMERTLKVRIANDPKHP 143
>pir||S41505 12RNP2 protein - Synechococcus sp. (PCC 6301)
gi|961511|dbj|BAA09863.1| 12kDa RNA-binding, 12RNP2
[Synechococcus sp.]
Length = 100
Score = 63.2 bits (152), Expect = 2e-09
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Frame = +2
Query: 143 LWVGNLPFKATQEQIQSFFNPYG-ASSVFILRDKETRKNRGMAFVNVDPE-KMDAAIREN 316
++VGNL F+AT+E ++ F YG S V + D+ET + RG AF+ ++ + DAAI E
Sbjct: 3 IYVGNLSFRATEEDVREVFAEYGPVSRVSLPDDRETGRLRGFAFIEMEEDAHEDAAISEL 62
Query: 317 DGKDFMGRALKVAKSNVPD--LPPKSQAAAPT 406
DG ++ GR L+V+K+ D P A PT
Sbjct: 63 DGAEWFGRQLRVSKARPKDDRRPAARSGATPT 94
>dbj|BAA04177.1| ss-DNA binding protein 12RNP2 precursor [Synechococcus sp. PCC
6301]
Length = 100
Score = 62.8 bits (151), Expect = 3e-09
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Frame = +2
Query: 143 LWVGNLPFKATQEQIQSFFNPYG-ASSVFILRDKETRKNRGMAFVNVDPE-KMDAAIREN 316
++VGNL F+AT+E ++ F YG S V + D+ET + RG AF+ ++ + DAAI E
Sbjct: 3 IYVGNLSFRATEEDVREVFAEYGPVSRVSLPVDRETGRLRGFAFIEMEEDAHEDAAISEL 62
Query: 317 DGKDFMGRALKVAKSNVPD--LPPKSQAAAPT 406
DG ++ GR L+V+K+ D P A PT
Sbjct: 63 DGAEWFGRQLRVSKARPKDDRRPAARSGATPT 94
>ref|NP_223484.1| putative [Helicobacter pylori J99] gi|7464827|pir||F71890
hypothetical protein jhp0766 - Helicobacter pylori
(strain J99) gi|4155331|gb|AAD06345.1| putative
[Helicobacter pylori J99]
Length = 82
Score = 62.0 bits (149), Expect = 5e-09
Identities = 29/75 (38%), Positives = 49/75 (64%), Gaps = 1/75 (1%)
Frame = +2
Query: 143 LWVGNLPFKATQEQIQSFFNPYG-ASSVFILRDKETRKNRGMAFVNVDPEKMDAAIREND 319
++VGNL + AT EQ++ F+ +G +V ++ D+ET+K +G FV + E + AI + D
Sbjct: 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEEGVREAIAKLD 63
Query: 320 GKDFMGRALKVAKSN 364
DFMGR ++V ++N
Sbjct: 64 NTDFMGRTIRVTEAN 78
