KCC001534A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001534A_C01 KCC001534A_c01
atCTAAGTTGTGACAACTCACTCATTTACACAGGCAAAGGGGACACCTGCCAGAACCTCG
CCTGAGACAAGCCTCTGACAGCAGACGGCACTTCTAACGAGTTTCTATCACCTAGGCCGA
AACCGACACAATGGCTGCGCCTCTCGCAGAGCTGGCGCAGCAGCAAACTGCGAAGCTCGT
CTTGCTCGGCGAGATGGGCTCGGGGAAGTCTTCCTTGGTGCTTCGATACGTCAAGGGCCA
GTTCTTCGACTATCAAGCCTCGACCGTGGGTGCTGCGTTTCTCACAAAGACGCTGCCGGA
GCTCAACGTGAAGTTTGAAATATGGGACACGGCCGGTCAGGAGCGCTACCACAGCCTCGC
GCCAATGTACTACAGGGGTGCCGCGGCAGCCATCATCGTGTACGACATCACGAGCCCAGA
CTCGTTCACCCGCGCGAAGTCGTGGGTGCGTGAGCTGCAGCGGCAGGGCAACCCCAACAT
GATTATGGCGCTGGCAGGCAACAAGGCAGACCTGGAGGGCCAGCGCGCGGTGACGGTGGA
GGAGGCGCAGGCGTACGCGGCGGAGAACGGGTTGTTCTACGTGGAGACGTCGGCCAAGAC
GTCCGCCAACGTCAACGAGCTGTTCGAGGAGATTGCCGGAAACTACCCAGCCGGAGCGCG
CCCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001534A_C01 KCC001534A_c01
         (665 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAB57219.1| GTP binding protein [Cichorium intybus x Cichori...   251  5e-66
emb|CAC24477.1| GTP binding protein [Cichorium intybus x Cichori...   250  1e-65
emb|CAC24474.1| GTP binding protein [Cichorium intybus x Cichori...   249  3e-65
emb|CAC24476.1| GTP binding protein [Cichorium intybus x Cichori...   249  3e-65
emb|CAC24475.1| GTP binding protein [Cichorium intybus x Cichori...   249  3e-65

>emb|CAB57219.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
          Length = 200

 Score =  251 bits (642), Expect = 5e-66
 Identities = 125/162 (77%), Positives = 144/162 (88%), Gaps = 2/162 (1%)
 Frame = +2

Query: 170 AKLVLLGEMGSGKSSLVLRYVKGQFFDYQASTVGAAFLTKTLP--ELNVKFEIWDTAGQE 343
           AKLVLLG+MG+GKSSLVLR+VKGQF ++Q ST+GAAF ++TL   +  VKFEIWDTAGQE
Sbjct: 11  AKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLVVNDATVKFEIWDTAGQE 70

Query: 344 RYHSLAPMYYRGAAAAIIVYDITSPDSFTRAKSWVRELQRQGNPNMIMALAGNKADLEGQ 523
           RYHSLAPMYYRGAAAAIIVYDITS DSFTRAK WV+ELQ+QGNPNM+MALAGNKADLE +
Sbjct: 71  RYHSLAPMYYRGAAAAIIVYDITSADSFTRAKKWVQELQKQGNPNMVMALAGNKADLEDK 130

Query: 524 RAVTVEEAQAYAAENGLFYVETSAKTSANVNELFEEIAGNYP 649
           R VTVEEA+ YA ENGLF++ETSAKT+ANVN++F EIA   P
Sbjct: 131 RKVTVEEARVYAEENGLFFMETSAKTAANVNDVFHEIAKRLP 172

>emb|CAC24477.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
          Length = 200

 Score =  250 bits (639), Expect = 1e-65
 Identities = 124/162 (76%), Positives = 143/162 (87%), Gaps = 2/162 (1%)
 Frame = +2

Query: 170 AKLVLLGEMGSGKSSLVLRYVKGQFFDYQASTVGAAFLTKTLP--ELNVKFEIWDTAGQE 343
           AKLVLLG+MG+GKSSLVLR+VKGQF ++Q ST+GAAF ++TL   +  VKFEIWDTAGQE
Sbjct: 11  AKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70

Query: 344 RYHSLAPMYYRGAAAAIIVYDITSPDSFTRAKSWVRELQRQGNPNMIMALAGNKADLEGQ 523
           RYHSLAPMYYRGAAAAIIVYDITS DSFTRAK WV+ELQ+QGNPNM+MALAGNKADLE +
Sbjct: 71  RYHSLAPMYYRGAAAAIIVYDITSADSFTRAKKWVQELQKQGNPNMVMALAGNKADLEDK 130

Query: 524 RAVTVEEAQAYAAENGLFYVETSAKTSANVNELFEEIAGNYP 649
           R VT EEA+ YA ENGLF++ETSAKT+ANVN++F EIA   P
Sbjct: 131 RKVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAKRLP 172

>emb|CAC24474.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
          Length = 196

 Score =  249 bits (636), Expect = 3e-65
 Identities = 123/162 (75%), Positives = 142/162 (86%), Gaps = 2/162 (1%)
 Frame = +2

Query: 170 AKLVLLGEMGSGKSSLVLRYVKGQFFDYQASTVGAAFLTKTLP--ELNVKFEIWDTAGQE 343
           AK VLLG+MG+GKSSLVLR+VKGQF ++Q ST+GAAF ++TL   +  VKFEIWDTAGQE
Sbjct: 7   AKFVLLGDMGAGKSSLVLRFVKGQFLEFQVSTIGAAFFSQTLAVNDATVKFEIWDTAGQE 66

Query: 344 RYHSLAPMYYRGAAAAIIVYDITSPDSFTRAKSWVRELQRQGNPNMIMALAGNKADLEGQ 523
           RYHSLAPMYYRGAAAAIIVYDITS DSFTRAK WV+ELQ+QGNPNM+MALAGNKADLE +
Sbjct: 67  RYHSLAPMYYRGAAAAIIVYDITSADSFTRAKKWVQELQKQGNPNMVMALAGNKADLEDK 126

Query: 524 RAVTVEEAQAYAAENGLFYVETSAKTSANVNELFEEIAGNYP 649
           R VT EEA+ YA ENGLF++ETSAKT+ANVN++F EIA   P
Sbjct: 127 RKVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAKRLP 168

>emb|CAC24476.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
          Length = 200

 Score =  249 bits (635), Expect = 3e-65
 Identities = 123/162 (75%), Positives = 142/162 (86%), Gaps = 2/162 (1%)
 Frame = +2

Query: 170 AKLVLLGEMGSGKSSLVLRYVKGQFFDYQASTVGAAFLTKTLP--ELNVKFEIWDTAGQE 343
           AK VLLG+MG+GKSSLVLR+VKGQF ++Q ST+GAAF ++TL   +  VKFEIWDTAGQE
Sbjct: 11  AKFVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70

Query: 344 RYHSLAPMYYRGAAAAIIVYDITSPDSFTRAKSWVRELQRQGNPNMIMALAGNKADLEGQ 523
           RYHSLAPMYYRGAAAAIIVYDITS DSFTRAK WV+ELQ+QGNPNM+MALAGNKADLE +
Sbjct: 71  RYHSLAPMYYRGAAAAIIVYDITSADSFTRAKKWVQELQKQGNPNMVMALAGNKADLEDK 130

Query: 524 RAVTVEEAQAYAAENGLFYVETSAKTSANVNELFEEIAGNYP 649
           R VT EEA+ YA ENGLF++ETSAKT+ANVN++F EIA   P
Sbjct: 131 RKVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAKRLP 172

>emb|CAC24475.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
          Length = 196

 Score =  249 bits (635), Expect = 3e-65
 Identities = 123/162 (75%), Positives = 142/162 (86%), Gaps = 2/162 (1%)
 Frame = +2

Query: 170 AKLVLLGEMGSGKSSLVLRYVKGQFFDYQASTVGAAFLTKTLP--ELNVKFEIWDTAGQE 343
           AK VLLG+MG+GKSSLVLR+VKGQF ++Q ST+GAAF ++TL   +  VKFEIWDTAGQE
Sbjct: 7   AKFVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 66

Query: 344 RYHSLAPMYYRGAAAAIIVYDITSPDSFTRAKSWVRELQRQGNPNMIMALAGNKADLEGQ 523
           RYHSLAPMYYRGAAAAIIVYDITS DSFTRAK WV+ELQ+QGNPNM+MALAGNKADLE +
Sbjct: 67  RYHSLAPMYYRGAAAAIIVYDITSADSFTRAKKWVQELQKQGNPNMVMALAGNKADLEDK 126

Query: 524 RAVTVEEAQAYAAENGLFYVETSAKTSANVNELFEEIAGNYP 649
           R VT EEA+ YA ENGLF++ETSAKT+ANVN++F EIA   P
Sbjct: 127 REVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAKRLP 168



EST assemble image


clone accession position
1 LC085h10_r AV625025 1 214
2 LC085h10_r AV625025 1 214
3 LC075e04_r AV624280 1 492
4 HC034a05_r AV634486 1 489
5 LC076g06_r AV624367 32 470
6 LC099a12_r AV625866 39 506
7 LC099b05_r AV625870 126 255
8 LC062f04_r AV623359 130 630
9 CM060a06_r AV390796 133 705




Chlamydomonas reinhardtii
Kazusa DNA Research Institute