KCC001532A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001532A_C01 KCC001532A_c01
GCACGAGGATACAACAACGACTGACATTAACCAGATAGCGAAAACACTCCCTCAAACCCA
CTTCCCACGCCTGTTGCTTAAATACCCGCCAAGATGTCCAACGTCGATCGTGTCGCATAT
ATGGATAACATTCGGACGAATCAGATAACAGAGCAGATTGTTCGGGAGAAGAACATGCAG
CGTAAGTACTTCCAGGAGCAGGAGGCAGCGGGCCGAATCGTGCCCAAAGCCCCCACGCCG
GCGGAGCCGGCCAAGTCCCTCCTAGAAACCGTGGGCCTCCCAAGCCACGTCCAAACAATA
CGCCAAGACCCTGAGCAGTCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAAC
CCGGGCTACATCGTGCGTGACGGGCCCAAGACGGCGTCAGTCATGAAGAAAGACTACGTG
TGGGACGAGGAGGAGATCGCGCTGATGAAGGAGCAGGGCATGCTAGACAAGAAATTCAAC
CGGCGGCGGGATGAGTTCGTAGACTACTGCGAGGCCAGCGCGCGCATG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001532A_C01 KCC001532A_c01
         (528 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_314668.1| ENSANGP00000020145 [Anopheles gambiae] gi|21298...    44  0.001
gb|AAH44265.1| Similar to splicing factor, arginine/serine-rich ...    39  0.041
ref|NP_823727.1| putative translation initiation factor IF-2 [St...    38  0.070
ref|NP_229480.1| hypothetical protein [Thermotoga maritima] gi|7...    38  0.092
sp|Q92125|ANX7_XENLA Annexin A7 (Annexin VII) (Synexin) gi|21340...    38  0.092

>ref|XP_314668.1| ENSANGP00000020145 [Anopheles gambiae] gi|21298004|gb|EAA10149.1|
           ENSANGP00000020145 [Anopheles gambiae str. PEST]
          Length = 201

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 35/115 (30%), Positives = 45/115 (38%), Gaps = 5/115 (4%)
 Frame = +3

Query: 162 SGEEHAA*VLPGA-----GGSGPNRAQSPHAGGAGQVPPRNRGPPKPRPNNTPRP*AVTE 326
           +G   A    PGA     GG GP +     AGG G   P  +GPPK +P+++  P A   
Sbjct: 16  TGATGAGAAAPGAPGGAGGGGGPGKGPGGTAGGGGGKGPGGKGPPKGKPSDSDAPGA--- 72

Query: 327 P*HQQAHVDGEPGLHRA*RAQDGVSHEERLRVGRGGDRADEGAGHARQEIQPAAG 491
                   +GEPG      A+D  S          GD+A        Q  QP  G
Sbjct: 73  ----SGKAEGEPG-----SAKDDAS--------ANGDKAKPDKADTEQPSQPKPG 110

>gb|AAH44265.1| Similar to splicing factor, arginine/serine-rich 6 [Xenopus laevis]
          Length = 660

 Score = 38.9 bits (89), Expect = 0.041
 Identities = 40/121 (33%), Positives = 55/121 (45%)
 Frame = +2

Query: 137 RIR*QSRLFGRRTCSVSTSRSRRQRAESCPKPPRRRSRPSPS*KPWASQATSKQYAKTLS 316
           R R +SR   +R  S S S+ +R+R+ S  K  R RSR     K   S++ SK   +   
Sbjct: 513 RERSRSRSKSKRERSGSRSKGKRERSGSRSKGKRERSRSRSKGKRERSRSRSKGKRERSR 572

Query: 317 SH*ALASASTCGRRTRATSCVTGPRRRQS*RKTTCGTRRRSR**RSRAC*TRNSTGGGMS 496
           SH       + G+R R+ S   G R     R  T   R RS   RSR+   R +  GG+ 
Sbjct: 573 SH-------SKGKRDRSRSRSKGKRDNSEGRSNT--KRARSTRSRSRSRSPRENGKGGVR 623

Query: 497 S 499
           S
Sbjct: 624 S 624

 Score = 36.6 bits (83), Expect = 0.20
 Identities = 34/100 (34%), Positives = 45/100 (45%)
 Frame = +2

Query: 143 R*QSRLFGRRTCSVSTSRSRRQRAESCPKPPRRRSRPSPS*KPWASQATSKQYAKTLSSH 322
           R  SR   +R  S S S+S+R+R+ S  K  R RSR     K   S + SK   +   S 
Sbjct: 482 RSDSRSKSKRERSSSRSKSKRERSSSRSKSKRERSRSRSKSKRERSGSRSKGKRERSGSR 541

Query: 323 *ALASASTCGRRTRATSCVTGPRRRQS*RKTTCGTRRRSR 442
                  + G+R R+ S   G R R   R  + G R RSR
Sbjct: 542 -------SKGKRERSRSRSKGKRERS--RSRSKGKRERSR 572

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
 Frame = +2

Query: 134 GRIR*QSRLFGRRTCSVSTSRSRRQRAESCPKPPRRRSRP-SPS*KPWASQATSKQYAKT 310
           G+ R +    G R+ S S SR R +     P   R RSR  SP+ K  +    S+ ++ T
Sbjct: 183 GKTRNRRSYSGSRSRSRSRSRRRSRSRSRHPSHSRSRSRSGSPAKKSRSPAKKSRSHSPT 242

Query: 311 LSSH*ALASASTCGRRTRA-----TSCVTGPRRRQS*RKTTCGTRRRSR 442
            SSH      S    R+R+     +S    P   +S R T+ G + RSR
Sbjct: 243 KSSHSQSPGKSQSRSRSRSRSKEQSSKPKSPHSSRS-RSTSRGKQERSR 290

>ref|NP_823727.1| putative translation initiation factor IF-2 [Streptomyces
           avermitilis MA-4680] gi|29606199|dbj|BAC70262.1|
           putative translation initiation factor IF-2
           [Streptomyces avermitilis MA-4680]
          Length = 1046

 Score = 38.1 bits (87), Expect = 0.070
 Identities = 31/97 (31%), Positives = 35/97 (35%)
 Frame = +3

Query: 192 PGAGGSGPNRAQSPHAGGAGQVPPRNRGPPKPRPNNTPRP*AVTEP*HQQAHVDGEPGLH 371
           PGA  +GP    +P   G      R   P  PRP   PRP     P        G  G  
Sbjct: 205 PGARPAGPRPGNNPFTSGGSTGMAR---PQAPRPGGAPRPGGAGAP--GGPRPQGAGGQD 259

Query: 372 RA*RAQDGVSHEERLRVGRGGDRADEGAGHARQEIQP 482
           RA R Q G     R + G GG R   G     Q  +P
Sbjct: 260 RAPRPQGGPGGAPRPQGGPGGARPTPGGMPRPQAPRP 296

>ref|NP_229480.1| hypothetical protein [Thermotoga maritima] gi|7462624|pir||F72226
           hypothetical protein - Thermotoga maritima (strain MSB8)
           gi|4982255|gb|AAD36747.1|AE001808_22 hypothetical
           protein [Thermotoga maritima]
          Length = 67

 Score = 37.7 bits (86), Expect = 0.092
 Identities = 19/33 (57%), Positives = 21/33 (63%)
 Frame = -3

Query: 310 GLGVLFGRGLGGPRFLGGTWPAPPAWGLWARFG 212
           GLG + GRGLG  RF GG+W  P  WG W  FG
Sbjct: 11  GLGPMTGRGLGWCRF-GGSWARP--WGWWRGFG 40

>sp|Q92125|ANX7_XENLA Annexin A7 (Annexin VII) (Synexin) gi|2134038|pir||S70644 annexin
           VII - African clawed frog gi|790544|gb|AAB18145.1|
           annexin VII [Xenopus laevis]
          Length = 512

 Score = 37.7 bits (86), Expect = 0.092
 Identities = 34/107 (31%), Positives = 45/107 (41%), Gaps = 9/107 (8%)
 Frame = +3

Query: 192 PGAGGSGPNRAQSPHAGGAGQVPPRNRGP-PKPRPNNTPRP*AVTEP*HQQAHVDGEPGL 368
           PG GG     +QS  AGG GQ+P +  G  P   P+  P   A  +P    A +    G 
Sbjct: 143 PGYGGFSQPSSQSYGAGGPGQMPGQMPGQMPGQAPSGYPSGPAPAQPTPYAAAMTATQGT 202

Query: 369 HRA*RAQDGVSHEERLRVGRGGDRADE--------GAGHARQEIQPA 485
            +A    D +S  E+LR    G   DE         +   RQ+IQ A
Sbjct: 203 IKAAPNFDALSDAEKLRKAMKGFGTDEKPIDVVANRSNDQRQKIQAA 249



EST assemble image


clone accession position
1 CM059h06_r AV390711 1 495
2 CM072a08_r AV391501 1 475
3 MX067a07_r BP088709 5 358
4 MX031d07_r BP087310 15 441
5 HC032e09_r AV634371 15 495
6 MX259b07_r BP092787 16 528




Chlamydomonas reinhardtii
Kazusa DNA Research Institute