KCC001520A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001520A_C01 KCC001520A_c01
cagctcggcaggtttgtgacacagggcaaccgcatcccgtttCCGGTAATCACTGCTGCA
TGAAGCAATATGGTGAACGGAACGCCAAAGGCGCATGCATATCCTCTGTTGTTTGGCGAG
CTTGCTCATACTCGCCTACAGTGGGTACTTGAAGGAGATTTCAGCTTGGTTGTGATTGGA
CAAGACTGCCCGGTTTCTTGCGTGTCCTAGGATTGCCTTCAATTTTGAGTGTTAATGCCG
CTTGATCCTGGATATTTTTCGCTCTCCAATGGCTTGCTTTGAGTTTGAATGTGTCTGTGA
TCTGTGATGTGTGACATGAACCTGGCGCGCGCAGGAAGGGGCAGGGCACGAGAGGCGCAG
ACACGCTTTTTGCGCAGGTGCCTTTGCGAGAACAACTGATCTATGGGCTATGCTTACGGG
CAGGCGTGTGATCCGGTATTCAGTGGGGCCACCGGCGTTCTTGCCGGGCCTGTGCATATG
CATATGCTGTGTTTTGGCTCTCCTACTCAGTCCTCCACCTTGCCTACTACGCGTGTTGCA
CTGGGGGCTTGTGTTTGATGCTAGGAGGACGACAGCAGCAGCAGCAGCAGCAGCAGCCAG
AGCACGTGTTTGCCATCTGTGTGCGGCACTGGCGGATTGTACCCGACAGCACCGTACGCG
ATGGGTTTGGGCGTCGCTGCGTGAnACGAAGCGGGCTCGCTTGCTCTGTGTTGTGTGCTG
Tntgctgtgtgctgggtgcgtgcc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001520A_C01 KCC001520A_c01
         (744 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_730714.2| Cysteine string protein CG6395-PC [Drosophila m...    40  0.029
ref|NP_524213.1| Cysteine string protein CG6395-PA [Drosophila m...    40  0.029
sp|Q03751|CSP_DROME Cysteine string protein gi|157129|gb|AAA2843...    40  0.029
ref|NP_730713.1| Cysteine string protein CG6395-PB [Drosophila m...    40  0.029
emb|CAD39046.1| hypothetical protein [Homo sapiens]                    38  0.15

>ref|NP_730714.2| Cysteine string protein CG6395-PC [Drosophila melanogaster]
           gi|3047004|gb|AAD09430.1| cysteine string protein 2
           [Drosophila melanogaster] gi|28380625|gb|AAN12195.2|
           CG6395-PC [Drosophila melanogaster]
          Length = 228

 Score = 40.4 bits (93), Expect = 0.029
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 604 CSGCCCCCCCCRPPSIKHKPPVQHA 530
           C  CCCCCCCC     K KPPV  +
Sbjct: 121 CCCCCCCCCCCNFCCGKFKPPVNES 145

>ref|NP_524213.1| Cysteine string protein CG6395-PA [Drosophila melanogaster]
           gi|157127|gb|AAA28431.1| csp29 gi|3047005|gb|AAD09431.1|
           cysteine string protein 3 [Drosophila melanogaster]
           gi|7296533|gb|AAF51817.1| CG6395-PA [Drosophila
           melanogaster]
          Length = 223

 Score = 40.4 bits (93), Expect = 0.029
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 604 CSGCCCCCCCCRPPSIKHKPPVQHA 530
           C  CCCCCCCC     K KPPV  +
Sbjct: 121 CCCCCCCCCCCNFCCGKFKPPVNES 145

>sp|Q03751|CSP_DROME Cysteine string protein gi|157129|gb|AAA28432.1| csp32
          Length = 249

 Score = 40.4 bits (93), Expect = 0.029
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 604 CSGCCCCCCCCRPPSIKHKPPVQHA 530
           C  CCCCCCCC     K KPPV  +
Sbjct: 121 CCCCCCCCCCCNFCCGKFKPPVNES 145

>ref|NP_730713.1| Cysteine string protein CG6395-PB [Drosophila melanogaster]
           gi|3047002|gb|AAD09428.1| cysteine string protein 1
           [Drosophila melanogaster] gi|7296532|gb|AAF51816.1|
           CG6395-PB [Drosophila melanogaster]
          Length = 249

 Score = 40.4 bits (93), Expect = 0.029
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 604 CSGCCCCCCCCRPPSIKHKPPVQHA 530
           C  CCCCCCCC     K KPPV  +
Sbjct: 121 CCCCCCCCCCCNFCCGKFKPPVNES 145

>emb|CAD39046.1| hypothetical protein [Homo sapiens]
          Length = 980

 Score = 38.1 bits (87), Expect = 0.15
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = -3

Query: 703 QASPLRXTQRRPNPSRTVLSGTIRQCRTQMANTCSGCC-CCCCCCRPPSIKHKPPVQHA 530
           + +P+R    RP P            +   A  C+G C CCCCCC PP     P    A
Sbjct: 37  EVAPVRVRAARPEP------------QPGGAGRCAGSCWCCCCCCCPPFAARAPAAARA 83



EST assemble image


clone accession position
1 HC096c04_r AV639199 1 393
2 HC055d05_r AV636118 43 389
3 CM058f12_r AV390410 147 792




Chlamydomonas reinhardtii
Kazusa DNA Research Institute