Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001519A_C01 KCC001519A_c01
(494 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_005637.2| TAR RNA binding protein 1; TAR RNA loop binding... 37 0.17
pir||S62356 TRP-185 protein - human gi|1184692|gb|AAC50379.1| TA... 37 0.17
ref|XP_228524.2| similar to bA203I16.1 (KIAA0970 protein) [Rattu... 37 0.17
emb|CAC15922.1| dJ792D7.1 (TAR (HIV) RNA-binding protein 1) [Hom... 37 0.17
pir||T48814 hypothetical protein 15E6.220 [imported] - Neurospor... 36 0.23
>ref|NP_005637.2| TAR RNA binding protein 1; TAR RNA loop binding protein [Homo
sapiens]
Length = 1621
Score = 36.6 bits (83), Expect = 0.17
Identities = 40/150 (26%), Positives = 57/150 (37%), Gaps = 25/150 (16%)
Frame = +3
Query: 12 EGKERAPCPAAAAATSDRVGWRCGTLYLCPGAHRRALWAVWRGGRASQETGRKEEKNAC- 188
+G E P AAA + R+ L C GA RA+W AS +GR EEK
Sbjct: 177 DGDEAGPAEDAAALVAGRL---LPVLVQCGGAALRAVWGGLAAPGASLGSGRVEEKLLVL 233
Query: 189 ----------PGGQRSSGKHVA-------------VSVCANNQRIMSRRGSQQILRDAAK 299
PGG R+ G A V ++R+ ++ +L+ A +
Sbjct: 234 SALAEKLLPEPGGDRARGAREAGPDARRCWRFWRTVQAGLGQADALTRKRARYLLQRAVE 293
Query: 300 VPKSFCAHVARGIQSRAGTLSGPRV-WWAE 386
V A G Q +GP + WW+E
Sbjct: 294 VSAELGADCTCGPQEG----NGPSLFWWSE 319
>pir||S62356 TRP-185 protein - human gi|1184692|gb|AAC50379.1| TAR RNA loop
binding protein gi|1586092|prf||2203267A TRP-185 protein
Length = 1621
Score = 36.6 bits (83), Expect = 0.17
Identities = 40/150 (26%), Positives = 57/150 (37%), Gaps = 25/150 (16%)
Frame = +3
Query: 12 EGKERAPCPAAAAATSDRVGWRCGTLYLCPGAHRRALWAVWRGGRASQETGRKEEKNAC- 188
+G E P AAA + R+ L C GA RA+W AS +GR EEK
Sbjct: 177 DGDEAGPAEDAAALVAGRL---LPVLVQCGGAALRAVWGGLAAPGASLGSGRVEEKLLVL 233
Query: 189 ----------PGGQRSSGKHVA-------------VSVCANNQRIMSRRGSQQILRDAAK 299
PGG R+ G A V ++R+ ++ +L+ A +
Sbjct: 234 SALAEKLLPEPGGDRARGAREAGPDARRCWRFWRTVQAGLGQADALTRKRARYLLQRAVE 293
Query: 300 VPKSFCAHVARGIQSRAGTLSGPRV-WWAE 386
V A G Q +GP + WW+E
Sbjct: 294 VSAELGADCTCGPQEG----NGPSLFWWSE 319
>ref|XP_228524.2| similar to bA203I16.1 (KIAA0970 protein) [Rattus norvegicus]
Length = 712
Score = 36.6 bits (83), Expect = 0.17
Identities = 20/67 (29%), Positives = 33/67 (48%), Gaps = 4/67 (5%)
Frame = +2
Query: 146 SESGDRAEGRKERMPRRPEELRQACG----GECVRK*PENNEPSWLSANIERCCKGSKVF 313
SE G++ + R+++ PR E R+ CG E +R+ P + CC+G +V
Sbjct: 658 SEKGEKCKTREQKRPRYAERRRRVCGPVRAAEMLREQPHH------------CCQGPRVH 705
Query: 314 LRPCGKG 334
CG+G
Sbjct: 706 PDECGRG 712
>emb|CAC15922.1| dJ792D7.1 (TAR (HIV) RNA-binding protein 1) [Homo sapiens]
Length = 1185
Score = 36.6 bits (83), Expect = 0.17
Identities = 40/150 (26%), Positives = 57/150 (37%), Gaps = 25/150 (16%)
Frame = +3
Query: 12 EGKERAPCPAAAAATSDRVGWRCGTLYLCPGAHRRALWAVWRGGRASQETGRKEEKNAC- 188
+G E P AAA + R+ L C GA RA+W AS +GR EEK
Sbjct: 177 DGDEAGPAEDAAALVAGRL---LPVLVQCGGAALRAVWGGLAAPGASLGSGRVEEKLLVL 233
Query: 189 ----------PGGQRSSGKHVA-------------VSVCANNQRIMSRRGSQQILRDAAK 299
PGG R+ G A V ++R+ ++ +L+ A +
Sbjct: 234 SALAEKLLPEPGGDRARGAREAGPDARRCWRFWRTVQAGLGQADALTRKRARYLLQRAVE 293
Query: 300 VPKSFCAHVARGIQSRAGTLSGPRV-WWAE 386
V A G Q +GP + WW+E
Sbjct: 294 VSAELGADCTCGPQEG----NGPSLFWWSE 319
>pir||T48814 hypothetical protein 15E6.220 [imported] - Neurospora crassa
Length = 1952
Score = 36.2 bits (82), Expect = 0.23
Identities = 26/77 (33%), Positives = 37/77 (47%), Gaps = 6/77 (7%)
Frame = -3
Query: 231 HSPPHACLSSSGRRGMRSFLPSALSP------DSLAHLSIPPTALSYAPLGISTMYHTAT 70
++PP + L+ S + M S +P+ S SLA +PP+A Y P +T AT
Sbjct: 1499 YNPPASSLAPSTHKSMPSAVPTTASGAVSSTVSSLAATPLPPSAPRYGPSNNATPTTPAT 1558
Query: 69 QPDRLSPLPPQDKVHAP 19
R +PLP V AP
Sbjct: 1559 AIPR-APLPAASSVSAP 1574
