KCC001516A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001516A_C01 KCC001516A_c01
GCACGAGGGCATACTTACCTTGTAAAGCCACTTGTGCGCGACGTAGCAGCTGCACAGACA
GCGAAATGTCGACTCCCGCGACCACATCCGCAGCGCCAGCCGCACCTGCTATTGCCCCTG
CAGCTAGCTCTCCTTTTATGAATGGCAATGTTATTGATGGAAAGGCAGTTGCGGCTAAGA
TCAGGGAGGAGACGGCTGCTAAGGTCGCGGAGCTTAAAGCCAAGTATGGCAAGGTTCCGG
GCCTGGCCGTGGTGATTGTGGGCGAGCGCAAGGACAGCCAGACGTACGTGCGCATGAAGA
AGAAGGCGTGTGAGGAGGTGGGCATTGCGTCCTTCGGCGCAGACCTGCCCGACACCGCCA
CACAGGACGAGGTGCTGGCTGTGGTGGCCGGCTTCAACGCGCACCCGGACGTGCACGGCA
TCCTGGTGCAGCTGCCGCTGCCCAAGCACATTGACGAGCAGGCTGTCCTGGGCGCCATCA
GCGTTGAGAAGGACGTGGACGGCTTCCACCCGCTCAACATGGGGCGGCTGGCCATGAATG
GGCGCGAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001516A_C01 KCC001516A_c01
         (549 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM62762.1| 5,10-methylenetetrahydrofolate dehydrogenase:5,10...   181  8e-45
ref|NP_187837.1| tetrahydrofolate dehydrogenase/cyclohydrolase, ...   181  8e-45
ref|NP_191971.1| tetrahydrofolate dehydrogenase/cyclohydrolase, ...   179  2e-44
pir||T50664 methylenetetrahydrofolate dehydrogenase (NADP) (EC 1...   179  3e-44
gb|AAG48834.1|AC084218_4 similar to Pisum sativum methylenetetra...   170  1e-41

>gb|AAM62762.1| 5,10-methylenetetrahydrofolate
           dehydrogenase:5,10-methenyltetrahydrofolate
           cyclohydrolase, putative [Arabidopsis thaliana]
          Length = 299

 Score =  181 bits (458), Expect = 8e-45
 Identities = 89/142 (62%), Positives = 110/142 (76%)
 Frame = +3

Query: 123 ASSPFMNGNVIDGKAVAAKIREETAAKVAELKAKYGKVPGLAVVIVGERKDSQTYVRMKK 302
           ASS      +IDGKA+A  IR E A +V  L  K+GKVPGLAVVIVG RKDSQTYV  K+
Sbjct: 2   ASSSDHTAKIIDGKAIAHTIRSEIAEEVRGLSEKHGKVPGLAVVIVGSRKDSQTYVNTKR 61

Query: 303 KACEEVGIASFGADLPDTATQDEVLAVVAGFNAHPDVHGILVQLPLPKHIDEQAVLGAIS 482
           KAC EVGI SF   LP+  ++ ++++ V   N++PDVHGILVQLPLPKHI+E+ +LGAIS
Sbjct: 62  KACAEVGIKSFDVGLPEEVSEADLISKVHELNSNPDVHGILVQLPLPKHINEENILGAIS 121

Query: 483 VEKDVDGFHPLNMGRLAMNGRE 548
           ++KDVDGFHPLN+G+LAM GRE
Sbjct: 122 IDKDVDGFHPLNIGKLAMKGRE 143

>ref|NP_187837.1| tetrahydrofolate dehydrogenase/cyclohydrolase, putative
           [Arabidopsis thaliana]
           gi|12322041|gb|AAG51064.1|AC069472_4
           5,10-methylenetetrahydrofolate
           dehydrogenase:5,10-methenyltetrahydrofolate
           cyclohydrolase, putative; 44272-46007 [Arabidopsis
           thaliana] gi|15795150|dbj|BAB03138.1|
           5,10-methylenetetrahydrofolate
           dehydrogenase/5,10-methenyltetrahydrofolate
           cyclohydrolase [Arabidopsis thaliana]
           gi|28416655|gb|AAO42858.1| At3g12290 [Arabidopsis
           thaliana]
          Length = 299

 Score =  181 bits (458), Expect = 8e-45
 Identities = 89/142 (62%), Positives = 110/142 (76%)
 Frame = +3

Query: 123 ASSPFMNGNVIDGKAVAAKIREETAAKVAELKAKYGKVPGLAVVIVGERKDSQTYVRMKK 302
           ASS      +IDGKA+A  IR E A +V  L  K+GKVPGLAVVIVG RKDSQTYV  K+
Sbjct: 2   ASSSDHTAKIIDGKAIAHTIRSEIAEEVRGLSEKHGKVPGLAVVIVGSRKDSQTYVNTKR 61

Query: 303 KACEEVGIASFGADLPDTATQDEVLAVVAGFNAHPDVHGILVQLPLPKHIDEQAVLGAIS 482
           KAC EVGI SF   LP+  ++ ++++ V   N++PDVHGILVQLPLPKHI+E+ +LGAIS
Sbjct: 62  KACAEVGIKSFDVGLPEEVSEADLISKVHELNSNPDVHGILVQLPLPKHINEEHILGAIS 121

Query: 483 VEKDVDGFHPLNMGRLAMNGRE 548
           ++KDVDGFHPLN+G+LAM GRE
Sbjct: 122 IDKDVDGFHPLNIGKLAMKGRE 143

>ref|NP_191971.1| tetrahydrofolate dehydrogenase/cyclohydrolase, putative
           [Arabidopsis thaliana] gi|7488134|pir||T01226 probable
           methylenetetrahydrofolate dehydrogenase (NADP) (EC
           1.5.1.5) F6N23.26 - Arabidopsis thaliana
           gi|3047116|gb|AAC13627.1| F6N23.26 gene product
           [Arabidopsis thaliana] gi|7267401|emb|CAB80871.1|
           putative tetrahydrofolate synthase [Arabidopsis
           thaliana] gi|16649149|gb|AAL24426.1| Unknown protein
           [Arabidopsis thaliana] gi|23197716|gb|AAN15385.1|
           Unknown protein [Arabidopsis thaliana]
          Length = 360

 Score =  179 bits (454), Expect = 2e-44
 Identities = 86/133 (64%), Positives = 106/133 (79%)
 Frame = +3

Query: 150 VIDGKAVAAKIREETAAKVAELKAKYGKVPGLAVVIVGERKDSQTYVRMKKKACEEVGIA 329
           VIDGKAVA KIR+E   +V+ +K   G +PGLAV++VG+RKDS TYVR KKKAC+ VGI 
Sbjct: 71  VIDGKAVAKKIRDEITIEVSRMKESIGVIPGLAVILVGDRKDSATYVRNKKKACDSVGIK 130

Query: 330 SFGADLPDTATQDEVLAVVAGFNAHPDVHGILVQLPLPKHIDEQAVLGAISVEKDVDGFH 509
           SF   L + ++++EVL  V+GFN  P VHGILVQLPLP H+DEQ +L A+S+EKDVDGFH
Sbjct: 131 SFEVRLAEDSSEEEVLKSVSGFNDDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFH 190

Query: 510 PLNMGRLAMNGRE 548
           PLN+GRLAM GRE
Sbjct: 191 PLNIGRLAMRGRE 203

>pir||T50664 methylenetetrahydrofolate dehydrogenase (NADP) (EC 1.5.1.5) /
           methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)
           [imported] - garden pea gi|4103987|gb|AAD01907.1|
           5,10-methylenetetrahydrofolate
           dehydrogenase-5,10-methenyltetrahydrofolate
           cyclohydrolase [Pisum sativum]
           gi|6002383|emb|CAB56756.1|
           5,10-methylenetetrahydrofolate dehydrogenase:
           5,10-methenyltetrahydrofolate cyclohydrolase [Pisum
           sativum]
          Length = 294

 Score =  179 bits (453), Expect = 3e-44
 Identities = 89/133 (66%), Positives = 106/133 (78%)
 Frame = +3

Query: 150 VIDGKAVAAKIREETAAKVAELKAKYGKVPGLAVVIVGERKDSQTYVRMKKKACEEVGIA 329
           VIDGKAVA  IR E A +V  L  KYGKVPGLAVVIVG RKDSQ+YV MK+KAC E+GI 
Sbjct: 4   VIDGKAVAQTIRSEIADEVRLLSQKYGKVPGLAVVIVGNRKDSQSYVGMKRKACAELGIK 63

Query: 330 SFGADLPDTATQDEVLAVVAGFNAHPDVHGILVQLPLPKHIDEQAVLGAISVEKDVDGFH 509
           SF  DLP+ A++ E++  V   NA+PDVHGILVQLPLPKH++E+ VL  IS+ KDVDGFH
Sbjct: 64  SFDIDLPEDASEAEIIKNVHELNANPDVHGILVQLPLPKHVNEEKVLTEISISKDVDGFH 123

Query: 510 PLNMGRLAMNGRE 548
           PLN+G+LAM GR+
Sbjct: 124 PLNIGKLAMKGRD 136

>gb|AAG48834.1|AC084218_4 similar to Pisum sativum methylenetetrahydrofolate dehydrogenase
           (NADP+) (EC 1.5.1.5)  (AF030516) [Oryza sativa]
          Length = 291

 Score =  170 bits (430), Expect = 1e-41
 Identities = 86/133 (64%), Positives = 103/133 (76%)
 Frame = +3

Query: 150 VIDGKAVAAKIREETAAKVAELKAKYGKVPGLAVVIVGERKDSQTYVRMKKKACEEVGIA 329
           +IDGKAVAA IR E AA VA L + +  VPGLAVVIVG RKDSQTYV+MK+KAC EVGI 
Sbjct: 4   IIDGKAVAADIRREVAADVAALSSAHNLVPGLAVVIVGSRKDSQTYVQMKRKACAEVGIR 63

Query: 330 SFGADLPDTATQDEVLAVVAGFNAHPDVHGILVQLPLPKHIDEQAVLGAISVEKDVDGFH 509
           S   DL +  ++  ++A V   NA P VHGILVQLPLPKHI+E+ +L  IS+EKDVDGFH
Sbjct: 64  SVDVDLAEDISEAALVAEVHRLNADPAVHGILVQLPLPKHINEEKILNEISLEKDVDGFH 123

Query: 510 PLNMGRLAMNGRE 548
           PLN+G+LAM GR+
Sbjct: 124 PLNIGKLAMKGRD 136



EST assemble image


clone accession position
1 CM058c04_r AV390345 1 584
2 CM068a07_r AV391047 1 549




Chlamydomonas reinhardtii
Kazusa DNA Research Institute