KCC001515A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001515A_C01 KCC001515A_c01
cggcacccgacgcatgtacggtagttttccattaggcccttgactgacagacagtactga
aggtataggttgttatgtatGATATTCTGTAGCTAACAGAGAGGTAGCGAGTTCCAGCGG
GCGGGATGTTGCAGACGGTACTGACGCCAAAAGTGTTGTGCGGTGCTGTGGTGGGGCTTG
GATGGATCCACGTGGTCACAAGCGATGCGGGATCGCACGGATTGCAAAGCAAGCAGGTCG
TAGGCTATTAGTGTTGCCTAGGCTGCTAGCTTTTGCGGCCACCTATTCTTCGGGATTACT
GCAGCCGCTGTATTGAAGGTAGACAGCGTTATCAACGGATGGTGGTGAACTGATGGAGCG
GCCGACCGTGAGCCTCTCAGATAGGCTGTAGGTGGGTTCGGCGCGCGTACTGCGGATGCG
CACAGGGTCAGGTGCACCTGTGTGACAGTGACATAAGGCCGAATGAGGATGGACGCGAGG
GGGAAGGCCTGCGTTTCGGCAGATGTGGAGTAATGAGTTGAGGCCGGTGCCAAAAGGGAA
ATGATTATTGGGGAACACGGGTGTTCATTGTCCCGGGTTCCGGTGACAGTGGCCTTTTAA
ACAAACCCTCCGGGGCGCTTCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001515A_C01 KCC001515A_c01
         (622 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_219053.1| similar to olfactory receptor MOR31-8 [Rattus n...    35  0.67
gb|AAP71125.1| olfactory receptor GA_x6K02T2PBJ9-7191524-7192471...    35  0.88
ref|XP_145833.1| similar to olfactory receptor MOR31-8 [Mus musc...    35  0.88
ref|NP_667259.1| olfactory receptor MOR31-8 [Mus musculus] gi|18...    35  0.88
prf||1407140A acetolactate synthase SuRA                               33  2.6

>ref|XP_219053.1| similar to olfactory receptor MOR31-8 [Rattus norvegicus]
          Length = 327

 Score = 35.4 bits (80), Expect = 0.67
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
 Frame = -1

Query: 241 TTCLLCNPCDPASLVTTWIHPSPTTAP---------HNTFGVSTVCNIPPAGTRYLSVSY 89
           T  +LCN C P ++   W+ P   T P         H +F + +   +  A  RY+++ +
Sbjct: 74  TDLILCNTCVPKTVSIFWLGPQHITFPGCLTQMFFLHFSFAMDSAILLAMAFDRYVAICF 133

Query: 88  RISYITTYTFSTV 50
            + Y T  T   V
Sbjct: 134 PLRYTTILTHQIV 146

>gb|AAP71125.1| olfactory receptor GA_x6K02T2PBJ9-7191524-7192471 [Mus musculus]
          Length = 315

 Score = 35.0 bits (79), Expect = 0.88
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
 Frame = -1

Query: 241 TTCLLCNPCDPASLVTTWIHPSPTTAP---------HNTFGVSTVCNIPPAGTRYLSVSY 89
           T  +LCN C P +    W+ P   T P         H +F + +   +  A  RY+++ +
Sbjct: 71  TDLILCNTCVPKTFSIFWLGPQHITFPGCLTQMFFLHFSFAMDSAILLSMAFDRYVAICF 130

Query: 88  RISYITTYTFSTV 50
            + Y T  T   V
Sbjct: 131 PLRYTTILTHQIV 143

>ref|XP_145833.1| similar to olfactory receptor MOR31-8 [Mus musculus]
          Length = 318

 Score = 35.0 bits (79), Expect = 0.88
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
 Frame = -1

Query: 241 TTCLLCNPCDPASLVTTWIHPSPTTAP---------HNTFGVSTVCNIPPAGTRYLSVSY 89
           T  +LCN C P +    W+ P   T P         H +F + +   +  A  RY+++ +
Sbjct: 74  TDLILCNTCVPKTFSIFWLGPQHITFPGCLTQMFFLHFSFAMDSAILLSMAFDRYVAICF 133

Query: 88  RISYITTYTFSTV 50
            + Y T  T   V
Sbjct: 134 PLRYTTILTHQIV 146

>ref|NP_667259.1| olfactory receptor MOR31-8 [Mus musculus]
           gi|18479378|gb|AAL60703.1| olfactory receptor MOR31-8
           [Mus musculus]
          Length = 318

 Score = 35.0 bits (79), Expect = 0.88
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
 Frame = -1

Query: 241 TTCLLCNPCDPASLVTTWIHPSPTTAP---------HNTFGVSTVCNIPPAGTRYLSVSY 89
           T  +LCN C P +    W+ P   T P         H +F + +   +  A  RY+++ +
Sbjct: 74  TDLILCNTCVPKTFSIFWLGPQHITFPGCLTQMFFLHFSFAMDSAILLSMAFDRYVAICF 133

Query: 88  RISYITTYTFSTV 50
            + Y T  T   V
Sbjct: 134 PLRYTTILTHQIV 146

>prf||1407140A acetolactate synthase SuRA
          Length = 667

 Score = 33.5 bits (75), Expect = 2.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 619 SAPEGLFKRPLSPEPGTMNTRVPQ*SFPFWHRPQLITP 506
           S     F + LSP   T +T +P+ +FPF H P   TP
Sbjct: 7   SPSSSAFSKTLSPSSSTSSTLLPRSTFPFPHHPHKTTP 44



EST assemble image


clone accession position
1 CM058c02_r AV390373 1 622
2 MX021h04_r BP086977 34 580




Chlamydomonas reinhardtii
Kazusa DNA Research Institute