KCC001510A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001510A_C01 KCC001510A_c01
CGCCTTGACTGCACTCGCTGTGCCTCCAAATTTTCCTCGTCAGCCCTGTGTGTCTTCAAC
GCCAGCACTGGGGTTCGCCACTGCGCCACTTGCTCTTTTCGCGCGCGCCGCACTCAATCG
TTTCGGGATTGGGCCGGTCTCCGGAACAGATCCGGAGCGCCCCTATAAAATGGGCGCGAC
GCACGCCTGCCCGCACCAGTTCATTGAACACTCCACACTACCTAGCTGCTCAATACCACA
AACTTCAAGCCAAACAGCAACAACAATGACTTTCCAGGCTCTGGGCACACTCGCGATGCT
GGGCAGCGGCGCCATTCTGGCGTCCACGTTGGCGACAGCCGCCCAGGACGCCCGCGACGG
ACGGTTCCTTGGCGGCTCACGCGCAAACAGCGCGCCGGGATCAGTATCAGGAGAAGCTTA
TAGTCAGCTACCGGAACCCCCAGTCATTTGAGCGGAACTTTGTGTCGGCGCTGGCGTCGG
GGCCATAGAGCAACTGCCACGCCTGCCTGAACACAATCTAAGAAACACAGGGTGCTTTTC
ACCACCGAACACGAGAGCGCTAGGGCCTGCGGCACGGCGCAGCATTCAAGGCATCGTTTG
TCTGCGGTTACGCACCAAGCTGAGGAGGCACGTATTGCGCTGCCCTGGGGAGCCTATGTT
GAGTTCTGACTCATGATCGATTGCGGTGTGTACTAGCTATGGCTAGGGTGTTGCATGGTA
AAGCGGAGGGTTGCTAAGTAACAAAGATGGCGGGAGCGTGCCGTATACACCACGCAATCA
CATGCACAAACACGTCTGGGTGTATCGGCTTGGCAACGTTACAATGAAAACAGCACTGCA
AGAGCAGGGATCCTGTTGCAGCATGTTTTGGGTAACACACCTCAATCACTCAATAACGCA
GCGTTGCTCGCGTGCCGGTTAAGATAACGTGCAAATAATCGCTGTAAATAGGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001510A_C01 KCC001510A_c01
         (954 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_650821.2| CG7360-PA [Drosophila melanogaster] gi|7300534|...    38  0.29
gb|AAL49062.1| RE52572p [Drosophila melanogaster]                      38  0.29
gb|AAD37247.1|AF134321_1 chimeric AFGP/trypsinogen-like serine p...    37  0.38
gb|AAH56816.1| Unknown (protein for MGC:63757) [Danio rerio]           37  0.38
gb|AAD31711.1|AF134322_1 chimeric antifreeze glycoprotein-serine...    37  0.49

>ref|NP_650821.2| CG7360-PA [Drosophila melanogaster] gi|7300534|gb|AAF55687.1|
           CG7360-PA [Drosophila melanogaster]
          Length = 546

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 47/153 (30%), Positives = 57/153 (36%), Gaps = 7/153 (4%)
 Frame = +2

Query: 8   TALAVPPNFPRQPCVSSTPALGFATAPLALFAR-AALNRFG---IGPVSGTDPERPYKMG 175
           T  A PP+F      +STP  G A A  +LFA  AA   FG     P  G     P   G
Sbjct: 28  TTTAPPPSFG---AATSTPTFGAAPATTSLFAAPAATPAFGAPAATPAFGAPASTP-GFG 83

Query: 176 ATHACPHQFIEHSTLPSCSIPQTSS---QTATTMTFQALGTLAMLGSGAILASTLATAAQ 346
           AT      F   +  P+  IP  +S     A T  F A       G+ A   +  A AA 
Sbjct: 84  ATSTAAPAFGTAAATPAFGIPAATSAFGAPAATPAFGAAAATPAFGAPAATPAFGAPAAT 143

Query: 347 DARDGRFLGGSRANSAPGSVSGEAYSQLPEPPV 445
            A        + A  AP S    A+   P P V
Sbjct: 144 SAFGAP--AATTAFGAPASTQASAFG-APAPAV 173

>gb|AAL49062.1| RE52572p [Drosophila melanogaster]
          Length = 545

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 47/153 (30%), Positives = 57/153 (36%), Gaps = 7/153 (4%)
 Frame = +2

Query: 8   TALAVPPNFPRQPCVSSTPALGFATAPLALFAR-AALNRFG---IGPVSGTDPERPYKMG 175
           T  A PP+F      +STP  G A A  +LFA  AA   FG     P  G     P   G
Sbjct: 28  TTTAPPPSFG---AATSTPTFGAAPATTSLFAAPAATPAFGAPAATPAFGAPASTP-GFG 83

Query: 176 ATHACPHQFIEHSTLPSCSIPQTSS---QTATTMTFQALGTLAMLGSGAILASTLATAAQ 346
           AT      F   +  P+  IP  +S     A T  F A       G+ A   +  A AA 
Sbjct: 84  ATSTAAPAFGTAAATPAFGIPAATSAFGAPAATPAFGAAAATPAFGAPAATPAFGAPAAT 143

Query: 347 DARDGRFLGGSRANSAPGSVSGEAYSQLPEPPV 445
            A        + A  AP S    A+   P P V
Sbjct: 144 SAFGAP--AATTAFGAPASTQASAFG-APAPAV 173

>gb|AAD37247.1|AF134321_1 chimeric AFGP/trypsinogen-like serine protease precursor
           [Dissostichus mawsoni]
          Length = 675

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 34/112 (30%), Positives = 44/112 (38%), Gaps = 1/112 (0%)
 Frame = +2

Query: 44  PCVSSTPALGFA-TAPLALFARAALNRFGIGPVSGTDPERPYKMGATHACPHQFIEHSTL 220
           P   +TPAL FA TA  A  A  A         +           AT A        +T 
Sbjct: 342 PATPATPALFFAATAATAATAATAATAAKPATAATAATAATAATAATAATAATAATAATA 401

Query: 221 PSCSIPQTSSQTATTMTFQALGTLAMLGSGAILASTLATAAQDARDGRFLGG 376
            + +   T++  AT  T     T A   + A  A+T ATAA    DGR +GG
Sbjct: 402 ATAATAATAATAATAATAATAATAATAATAAT-AATAATAAVPREDGRIIGG 452

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 32/117 (27%), Positives = 42/117 (35%)
 Frame = +2

Query: 2   ALTALAVPPNFPRQPCVSSTPALGFATAPLALFARAALNRFGIGPVSGTDPERPYKMGAT 181
           A  A    P  P  P   +TPA     A  ALF  AA       P +   P   +   A 
Sbjct: 299 ATPATPATPATPATPATPATPATPATPATPALFF-AATAATAATPATPATPALFFAATAA 357

Query: 182 HACPHQFIEHSTLPSCSIPQTSSQTATTMTFQALGTLAMLGSGAILASTLATAAQDA 352
            A        +  P+ +    ++ TA T    A    A   + A  A+T ATAA  A
Sbjct: 358 TAATAATAATAAKPATAATAATAATAATAATAATAATAATAATAATAATAATAATAA 414

>gb|AAH56816.1| Unknown (protein for MGC:63757) [Danio rerio]
          Length = 496

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +2

Query: 77  ATAPLALFARAALNRFGIGPVSGTDPERPYKMGATHACPHQFIEHSTLPSCSIPQ 241
           A   L LF  + L RF   P +G +P   YK+GATH CP  +        C++P+
Sbjct: 449 ARMELFLFFSSLLQRFTFSPPAGVEPSLDYKLGATH-CPQPY------QLCAVPR 496

>gb|AAD31711.1|AF134322_1 chimeric antifreeze glycoprotein-serine protease [Dissostichus
           mawsoni]
          Length = 344

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 31/111 (27%), Positives = 42/111 (36%)
 Frame = +2

Query: 44  PCVSSTPALGFATAPLALFARAALNRFGIGPVSGTDPERPYKMGATHACPHQFIEHSTLP 223
           P  ++TPAL FA         A          + T         AT A        +T  
Sbjct: 13  PATAATPALIFAATAATPATAATAATAATAATAATPATAALFFAATAATAATAATAATAA 72

Query: 224 SCSIPQTSSQTATTMTFQALGTLAMLGSGAILASTLATAAQDARDGRFLGG 376
           + +   T++  AT   F A    A   + A  A+T ATAA    DGR +GG
Sbjct: 73  TAATAATAATPATAALFFA--ATAATAATAATAATAATAAVPREDGRIIGG 121



EST assemble image


clone accession position
1 LC027f02_r AV620844 1 606
2 LC078b06_r AV624467 40 533
3 CM057b11_r AV390459 79 704
4 LC088f07_r AV625160 87 547
5 LC047g08_r AV622297 87 592
6 HC029f12_r AV634135 284 717
7 HC070a02_r AV637191 284 822
8 HC068h02_r AV637109 284 710
9 HC008c09_r AV632443 289 801
10 CM076d10_r AV391691 299 893
11 HC071e01_r AV637310 307 782
12 HC069d07_r AV637148 314 768
13 HC073c07_r AV637449 317 763
14 HC055c01_r AV636105 612 1032




Chlamydomonas reinhardtii
Kazusa DNA Research Institute