Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001509A_C01 KCC001509A_c01
(1063 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN77901.2| putative nucleic acid binding protein [Chlamydomo... 256 6e-67
pir||S46234 Gbp1p protein - Chlamydomonas reinhardtii gi|520519|... 100 4e-20
ref|XP_331180.1| hypothetical protein [Neurospora crassa] gi|289... 78 3e-13
gb|AAM93968.1| Gbp1 [Griffithsia japonica] 75 3e-12
ref|NP_009916.1| G-strand Binding Proteinbinds single-stranded t... 71 4e-11
>gb|AAN77901.2| putative nucleic acid binding protein [Chlamydomonas reinhardtii]
Length = 247
Score = 256 bits (653), Expect = 6e-67
Identities = 120/121 (99%), Positives = 120/121 (99%)
Frame = +3
Query: 3 GRGRGRGGRGGAMPAMQVVMPGVAYPGMPMGGVGMEPTGEPSGLQVVVHNLPWSCQWQQL 182
GRGRGRGGRGGAMPAMQ VMPGVAYPGMPMGGVGMEPTGEPSGLQVVVHNLPWSCQWQQL
Sbjct: 127 GRGRGRGGRGGAMPAMQGVMPGVAYPGMPMGGVGMEPTGEPSGLQVVVHNLPWSCQWQQL 186
Query: 183 KDHFKEWRVERADVVYDAWGRSRGFGTVRFTTKEDAATACDKLNNSQIDGRTISVRLDRF 362
KDHFKEWRVERADVVYDAWGRSRGFGTVRFTTKEDAATACDKLNNSQIDGRTISVRLDRF
Sbjct: 187 KDHFKEWRVERADVVYDAWGRSRGFGTVRFTTKEDAATACDKLNNSQIDGRTISVRLDRF 246
Query: 363 A 365
A
Sbjct: 247 A 247
>pir||S46234 Gbp1p protein - Chlamydomonas reinhardtii gi|520519|gb|AAA21869.1|
Gbp1p
Length = 221
Score = 100 bits (249), Expect = 4e-20
Identities = 56/121 (46%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Frame = +3
Query: 3 GRGRGRGGRGGAMPAMQVVMPGVAYPGMPMGGVGMEPTGEPSGLQVVVHNLPWSCQWQQL 182
GRG GRGGRG P E TGE SGLQVVV +PW+ W++L
Sbjct: 121 GRGAGRGGRGAGAP---------------------EATGESSGLQVVVQGIPWAYTWREL 159
Query: 183 KDHFKE-WRVERADVVYDAWGRSRGFGTVRFTTKEDAATACDKLNNSQIDGRTISVRLDR 359
KD F E V+RADVV GRSRG+GTV+FTTKE A A + + S+++GR ++V +DR
Sbjct: 160 KDMFAEVGGVDRADVVTGYDGRSRGYGTVKFTTKEAAEAAVARYHESELEGRRLAVFIDR 219
Query: 360 F 362
+
Sbjct: 220 Y 220
Score = 61.6 bits (148), Expect = 2e-08
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +3
Query: 129 GLQVVVHNLPWSCQWQQLKDHFKEW-RVERADVVYDAWGRSRGFGTVRFTTKEDAATACD 305
G + V NL W WQ LKD F+E V +V+ D GRS+G+G V F + E+A A
Sbjct: 10 GKRCFVGNLAWKTSWQDLKDKFRECGNVVYTNVMRDDDGRSKGWGIVEFESPEEALHAIQ 69
Query: 306 KLNNSQIDGRTISVRLDR 359
LN +++ GR I VR DR
Sbjct: 70 TLNGAELGGRRILVREDR 87
>ref|XP_331180.1| hypothetical protein [Neurospora crassa] gi|28920971|gb|EAA30296.1|
hypothetical protein [Neurospora crassa]
Length = 641
Score = 77.8 bits (190), Expect = 3e-13
Identities = 53/126 (42%), Positives = 63/126 (49%), Gaps = 5/126 (3%)
Frame = +3
Query: 3 GRGRGRGGRGGAM-PAMQVVMPGVAYPGMPMGGVGMEPTGEPSGLQVVVHNLPWSCQWQQ 179
G G RGG GG M P +PG A PG G G P G Q+ V NLP++ WQ
Sbjct: 338 GGGANRGGFGGGMGPNGYGAVPGHAGPG----GFGGGPMAGGGGRQIYVSNLPYNVGWQD 393
Query: 180 LKDHFKEWR----VERADVVYDAWGRSRGFGTVRFTTKEDAATACDKLNNSQIDGRTISV 347
LKD F++ V RADV GR +G G V F T +DA A + N GR + V
Sbjct: 394 LKDLFRQAARNGGVIRADVHIGPDGRPKGSGIVVFETPDDARNAIQQFNGYDWQGRMLEV 453
Query: 348 RLDRFA 365
R DRFA
Sbjct: 454 REDRFA 459
Score = 59.3 bits (142), Expect = 1e-07
Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Frame = +3
Query: 3 GRGRGRGGRGGAMPAMQVVMPGVAYPGMPMGGVGMEPTGEP--------SGLQ----VVV 146
G G G GGRGG A PG P +P +P SG + + V
Sbjct: 495 GFGGGFGGRGGFGGA----------PGGPPSFDANQPAAQPNPFTDFATSGTERSEIIYV 544
Query: 147 HNLPWSCQWQQLKDHFKE-WRVERADVVYDAWGRSRGFGTVRFTTKEDAATACDKLNNSQ 323
NLPWS + L + F +VE+A++ Y+ GRSRG G VRF + A TA K Q
Sbjct: 545 RNLPWSTSNEDLVELFSTIGKVEQAEIQYEPSGRSRGSGVVRFDNADTADTAIQKFQGYQ 604
Query: 324 IDGRTISVRLDRF 362
GR + + ++
Sbjct: 605 YGGRPLGLSFVKY 617
Score = 44.7 bits (104), Expect = 0.003
Identities = 33/111 (29%), Positives = 46/111 (40%), Gaps = 24/111 (21%)
Frame = +3
Query: 81 GMPMGGVGMEPTGEP-----------------------SGLQVVVHNLPWSCQWQQLKDH 191
G P GG G+ TG P +V V NL + +W LKD
Sbjct: 215 GAPAGGQGIGYTGPPHRTFEDRAAHREQVMNNIRETSQQDRRVYVGNLSYDVKWHHLKDF 274
Query: 192 FKE-WRVERADVVYDAWGRSRGFGTVRFTTKEDAATACDKLNNSQIDGRTI 341
++ V ADV+ G S+G G V + T+E A A L+N + GR +
Sbjct: 275 MRQAGEVLYADVLLLPNGMSKGCGIVEYATREQAQNAVATLSNQNLMGRLV 325
>gb|AAM93968.1| Gbp1 [Griffithsia japonica]
Length = 156
Score = 74.7 bits (182), Expect = 3e-12
Identities = 42/95 (44%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +3
Query: 78 PGMPMGGVGMEPTGEPSGLQVVVHNLPWSCQWQQLKDHFKE-WRVERADVVYDAWGRSRG 254
P G + G G +V V NL W +WQ LKDH +E V A+V +A GRS G
Sbjct: 7 PPPQSNGAAPQTGGHSGGKRVYVGNLSWDTRWQGLKDHMREAGDVVHAEVFTEASGRSAG 66
Query: 255 FGTVRFTTKEDAATACDKLNNSQIDGRTISVRLDR 359
G V F E A TA LN++ +DGRTI VR DR
Sbjct: 67 CGIVEFENSEGAETAISTLNDTMLDGRTIFVRADR 101
Score = 33.9 bits (76), Expect(2) = 1.1
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +3
Query: 117 GEPS--GLQVVVHNLPWSCQWQQLKDHFKEW 203
G PS G ++VV NLP+ +WQ LKD F+++
Sbjct: 120 GRPSDRGRKIVVWNLPYHIRWQDLKDLFRDY 150
Score = 21.2 bits (43), Expect(2) = 1.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 50 AGRDAGCGVPGHAHGRGGHGA 112
+GR AGCG+ + G A
Sbjct: 61 SGRSAGCGIVEFENSEGAETA 81
>ref|NP_009916.1| G-strand Binding Proteinbinds single-stranded telomeric repeat
sequences in vitro; similar to Gbp1p, a single-stranded
telomeric DNA-binding protein from Chlamydomonas
reinhardtii; Gbp2p [Saccharomyces cerevisiae]
gi|140346|sp|P25555|GBP2_YEAST Single-strand telomeric
DNA-binding protein GBP2 (G-strand binding protein 2)
(RAP1 localization factor 6) gi|83139|pir||S19338
hypothetical protein YCL011c - yeast (Saccharomyces
cerevisiae) gi|1907133|emb|CAA42348.1| potential
telomere-associated protein [Saccharomyces cerevisiae]
Length = 427
Score = 70.9 bits (172), Expect = 4e-11
Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +3
Query: 126 SGLQVVVHNLPWSCQWQQLKDHFKEW-RVERADVVYDAWGRSRGFGTVRFTTKEDAATAC 302
+G +V + NLP+S WQ LKD FKE V RADV D G SRGFG+V + T+++ A
Sbjct: 217 NGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAI 276
Query: 303 DKLNNSQIDGRTISVRLDRF 362
D N +++GR + VR RF
Sbjct: 277 DTFNGMEVEGRVLEVREGRF 296
