KCC001502A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001502A_C01 KCC001502A_c01
gtaccattctgaagaccatcagccggcactgtgGGTGTTGTAAGCGGTGTGTTGGGCCGG
AGGCCCATTCAATGCCCCACGGGGCAGGTCTCAATACGGCCACGACTCATCCATCATTCA
CATGCGCCGGAACGAGTGCCGCGTTTCGAGGTGAAGGTTTCATTACAATTGTATCCGTTT
GTCTGCGTAGCGCTCTGTATCCTGGAGCACGCAATGCGGCGCGAGGTTGTCGTATGAGAG
GGCCGGCGCGCAGGCTTGAGAGGCTATTTAATAGGCCGGAGGAGGGGAGGCAAGAGCGCT
GAGTTCTATGTCGGTGATGTGTTTGTGTGGGGCGTCGCGGCACACCTTGCGGTGGGTGCG
GGCGCGCCCCTGTTCGTGACGGGACGTGTGACCGGCGGAGAAGAAGAGAGACGCGTGAAA
GATGCTGTTTGGAGACTTGCGAACAGGATTACGTAAGTGGAGGAGTTACTGTGGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001502A_C01 KCC001502A_c01
         (476 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_598197.1| mucin 10 [Rattus norvegicus] gi|627969|pir||A53...    39  0.040
gb|AAA75589.1| mucin                                                   37  0.090
sp|P13728|SGS3_DROYA Salivary glue protein SGS-3 precursor gi|85...    37  0.090
ref|XP_294567.2| similar to bA113O24.1 (similar to insulin-like ...    37  0.15
dbj|BAB67823.1| KIAA1930 protein [Homo sapiens]                        37  0.15

>ref|NP_598197.1| mucin 10 [Rattus norvegicus] gi|627969|pir||A53715 apomucin
           precursor - rat gi|476097|gb|AAA20966.1| apomucin
          Length = 322

 Score = 38.5 bits (88), Expect = 0.040
 Identities = 29/101 (28%), Positives = 42/101 (40%), Gaps = 3/101 (2%)
 Frame = -1

Query: 428 TASFTRLSSSPPVTRPVTNRGAPAPTARC---AATPHTNTSPT*NSALLPPLLRPIK*PL 258
           T   T  ++  P T+P T+   PAPT +    + TP   T PT +S    P  +P     
Sbjct: 203 TKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDST 262

Query: 257 KPARRPSHTTTSRRIACSRIQSATQTNGYNCNETFTSKRGT 135
            PA      TT +    + I   T TN  N + + T+   T
Sbjct: 263 TPAPTTKIPTTPKPSTSTAI--PTSTNSANSSSSTTTSSTT 301

 Score = 36.2 bits (82), Expect = 0.20
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -1

Query: 431 QTASFTRLSSSP-PVTRPVTNRGAPAPTAR---CAATPHTNTSPT*NSALLPPLLRPIK* 264
           QT   T  S++P P T+P T+   PAPT +    + TP   T PT +S    P  +P   
Sbjct: 123 QTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTNKPTTD 182

Query: 263 PLKPARRPSHTTTS 222
              PA     TT S
Sbjct: 183 STTPAPTNKPTTDS 196

 Score = 35.0 bits (79), Expect = 0.45
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = -1

Query: 407 SSSP-PVTRPVTNRGAPAPTAR---CAATPHTNTSPT*NSALLPPLLRPIK*PLKPARRP 240
           S++P P T+P T+   PAPT +    + TP   T PT +S    P  +P      PA   
Sbjct: 196 STTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTT 255

Query: 239 SHTTTS 222
             TT S
Sbjct: 256 KPTTDS 261

 Score = 34.3 bits (77), Expect = 0.76
 Identities = 21/68 (30%), Positives = 31/68 (44%), Gaps = 3/68 (4%)
 Frame = -1

Query: 416 TRLSSSPPVTRPVTNRGAPAPTAR---CAATPHTNTSPT*NSALLPPLLRPIK*PLKPAR 246
           T++++    T+P T+   PAPT +    + TP   T PT +S    P  +P      PA 
Sbjct: 116 TKVTTPAQTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAP 175

Query: 245 RPSHTTTS 222
               TT S
Sbjct: 176 TNKPTTDS 183

 Score = 32.7 bits (73), Expect = 2.2
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = -1

Query: 428 TASFTRLSSSPPVTRPVTNRGAPAPTARC---AATPHTNTSPT*NSALLPPLLRPIK*PL 258
           T   T  ++  P T+P T+   PAPT +    + TP     PT +S    P  +P     
Sbjct: 151 TKPTTDSTTPAPTTKPTTDSTTPAPTNKPTTDSTTPAPTNKPTTDSTTPAPTTKPTTDST 210

Query: 257 KPARRPSHTTTS 222
            PA     TT S
Sbjct: 211 TPAPTTKPTTDS 222

 Score = 32.7 bits (73), Expect = 2.2
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = -1

Query: 428 TASFTRLSSSPPVTRPVTNRGAPAPTAR---CAATPHTNTSPT*NSALLPPLLRPIK*PL 258
           T   T  ++  P T+P T+   PAPT +    + TP     PT +S    P  +P     
Sbjct: 138 TKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTNKPTTDSTTPAPTNKPTTDST 197

Query: 257 KPARRPSHTTTS 222
            PA     TT S
Sbjct: 198 TPAPTTKPTTDS 209

>gb|AAA75589.1| mucin
          Length = 309

 Score = 37.4 bits (85), Expect = 0.090
 Identities = 29/88 (32%), Positives = 39/88 (43%), Gaps = 4/88 (4%)
 Frame = -1

Query: 431 QTASFTRLSSSP-PVTRPVTNRGAPAPTAR---CAATPHTNTSPT*NSALLPPLLRPIK* 264
           QT   T  S++P P T+P T+   PAPT +    + TP   T PT +S    P  +P   
Sbjct: 123 QTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTD 182

Query: 263 PLKPARRPSHTTTSRRIACSRIQSATQT 180
              PA     TT S   A +   +A  T
Sbjct: 183 STTPAPTNKPTTDSTTPAPTTKPTADST 210

 Score = 36.2 bits (82), Expect = 0.20
 Identities = 28/95 (29%), Positives = 41/95 (42%), Gaps = 4/95 (4%)
 Frame = -1

Query: 407 SSSP-PVTRPVTNRGAPAPTARC---AATPHTNTSPT*NSALLPPLLRPIK*PLKPARRP 240
           S++P P T+P  +   PAPT +    + TP   T PT +S    P  +P      PA   
Sbjct: 196 STTPAPTTKPTADSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTT 255

Query: 239 SHTTTSRRIACSRIQSATQTNGYNCNETFTSKRGT 135
              TT +    + I   T TN  N + + T+   T
Sbjct: 256 KIPTTPKPSTSTAI--PTSTNSANSSSSTTTSSTT 288

 Score = 34.7 bits (78), Expect = 0.58
 Identities = 21/68 (30%), Positives = 31/68 (44%), Gaps = 3/68 (4%)
 Frame = -1

Query: 416 TRLSSSPPVTRPVTNRGAPAPTAR---CAATPHTNTSPT*NSALLPPLLRPIK*PLKPAR 246
           T++++    T+P T+   PAPT +    + TP   T PT +S    P  +P      PA 
Sbjct: 116 TKVTTPAQTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAP 175

Query: 245 RPSHTTTS 222
               TT S
Sbjct: 176 TTKPTTDS 183

 Score = 33.5 bits (75), Expect = 1.3
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = -1

Query: 428 TASFTRLSSSPPVTRPVTNRGAPAPTAR---CAATPHTNTSPT*NSALLPPLLRPIK*PL 258
           T   T  ++  P T+P T+   PAPT +    + TP     PT +S    P  +P     
Sbjct: 151 TKPTTDSTTPAPTTKPTTDSTTPAPTTKPTTDSTTPAPTNKPTTDSTTPAPTTKPTADST 210

Query: 257 KPARRPSHTTTS 222
            PA     TT S
Sbjct: 211 TPAPTTKPTTDS 222

 Score = 31.2 bits (69), Expect = 6.5
 Identities = 14/38 (36%), Positives = 20/38 (51%)
 Frame = -1

Query: 428 TASFTRLSSSPPVTRPVTNRGAPAPTARCAATPHTNTS 315
           T   T  ++  P T+P T+   PAPT +   TP  +TS
Sbjct: 229 TKPTTDSTTPAPTTKPTTDSTTPAPTTKIPTTPKPSTS 266

>sp|P13728|SGS3_DROYA Salivary glue protein SGS-3 precursor gi|85255|pir||S01360 salivary
           glue protein sgs-3 precursor - fruit fly  (Drosophila
           yakuba)
          Length = 263

 Score = 37.4 bits (85), Expect = 0.090
 Identities = 30/102 (29%), Positives = 44/102 (42%), Gaps = 3/102 (2%)
 Frame = -1

Query: 431 QTASFTRLSSSPPVTRPVTNRGAPAPTARCAATPHTNTSPT*N---SALLPPLLRPIK*P 261
           +T + TR +++ P T   T      PT R   T HT T+ T     +       RP    
Sbjct: 84  RTTTTTRQTTTRPTTTTTTTTTTRRPTTRSTTTRHTTTTTTTTRRPTTTTTTTRRPTT-T 142

Query: 260 LKPARRPSHTTTSRRIACSRIQSATQTNGYNCNETFTSKRGT 135
               RRP+ TTT+ R+  +R  +   T      ++ TSKR T
Sbjct: 143 TTTTRRPTTTTTTTRLPTTRSTTTRHT-----TKSTTSKRPT 179

>ref|XP_294567.2| similar to bA113O24.1 (similar to insulin-like growth factor
           binding protein) [Homo sapiens]
           gi|17384405|emb|CAD13245.1| bA113O24.1 (similar to
           insulin-like growth factor binding protein) [Homo
           sapiens]
          Length = 278

 Score = 36.6 bits (83), Expect = 0.15
 Identities = 27/80 (33%), Positives = 34/80 (41%), Gaps = 2/80 (2%)
 Frame = +3

Query: 30  CGCCKRCVGPEAHSMPHGAGLNTATTHPSFTCAGTSAAFRGEGFITIVSVCLRSALYPGA 209
           CGCC RC+G E  S    AG       P   CA  +A    EG  T + VC +     G+
Sbjct: 63  CGCCARCLGAEGASCGGRAG---GRCGPGLVCASQAAGAAPEG--TGLCVCAQRGTVCGS 117

Query: 210 --RNAARGCRMRGPARRLER 263
             R+    C +R  AR   R
Sbjct: 118 DGRSYPSVCALRLRARHTPR 137

>dbj|BAB67823.1| KIAA1930 protein [Homo sapiens]
          Length = 664

 Score = 36.6 bits (83), Expect = 0.15
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
 Frame = -1

Query: 461 STYVILFASLQTASFTRLSSSPPVTRPVTNRGAPAPTARCAATPHTNTSPT*NSALLPP- 285
           ST      +L      + ++SP  T P       +PT    +  HT TSPT  +++ PP 
Sbjct: 26  STLTTTGPTLNIIGPVQTTTSPTHTMPSPTHTTASPTHTSTSPTHTPTSPTHKTSMSPPT 85

Query: 284 ----------LLRPIK*PLKPARRPSHTTTS 222
                     L++    P  P   P+H TTS
Sbjct: 86  TTSPTPSGMGLVQTATSPTHPTTSPTHPTTS 116



EST assemble image


clone accession position
1 HC003f11_r AV632083 1 476
2 CM056b02_r AV390271 31 477




Chlamydomonas reinhardtii
Kazusa DNA Research Institute