KCC001489A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001489A_C01 KCC001489A_c01
cccggctgcaggggtgggcaCGAGGGCAGTTAGTCCATGCGAATCGTCTGGCCTTGTGCG
GGGCTTTCTACGTGACACAAGGATTTAGGCCCTGAGTGCCCGATAGCTTTGCCCCAAAGC
GGTGGACCATGTCGCTATTCAAGTCTAGCCTGCCTGGCGGGCTTCCTATTCCCCTATCGG
CACCCCAAGGGCCAAGGGGCTTGTTGAGGGCACGCTTTATGGACTGGGCTCCCTGTTTCG
CGGCGTGGGCGCCGCGCTGGATGAGCTGGGCTCTATGGTTCAGGGCCCTCAGGGTAGTGT
CAAGGACCACGTCCAGCCTAACCTGGCGTTTGCACCAGTGCACCGCAAGCCGGATGTGCC
CGTTAACGCGGGCCAGGTGGTGCCCGCTCCACCCGCTGCTGCTCGCACGCTGAAAATCAA
GGAGGTGGTTGTGCCCAACAAGCACAGCACCGCGTTCGTGGCTGCCAACGCCAATGTGCT
CGGGAACGTTAAGCTGGGGGCGGGCTCATCGGTGTGGTATGGCGCCGTGCTGCGCGGTGA
CGTGAACGGCATTGAGGTGGGCGCCAACAGCAACATCCAGGACAACGCCATCGTGCACGT
GTCCAAGTACAGCATGGACGGCACGGCACGGCCCACCGTCATCGGCAACAATGTGACCAT
TGGCCACGCCGCCACGGTGCACGCCTGCACCATTGAGGACAACTGCCTGGTGGGCATGGG
CGCCACCGTGCTCGACGGAGCGACGGTCAAGAGCGGCTCCATCGTGGCTGCCGGCGCCGT
GGTGCCGnCCAACACCACCATCCCCTCGGGCCAGGTGTGGGCCGCTCGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001489A_C01 KCC001489A_c01
         (830 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK28403.1|AF249876_1 transcription factor APFI [Arabidopsis ...   176  5e-43
ref|NP_175159.1| transferase hexapeptide repeat family [Arabidop...   176  5e-43
dbj|BAC16488.1| putative transcription factor APFI [Oryza sativa...   173  4e-42
ref|NP_569036.1| transferase hexapeptide repeat family [Arabidop...   171  1e-41
gb|AAM61583.1| unknown [Arabidopsis thaliana]                         169  5e-41

>gb|AAK28403.1|AF249876_1 transcription factor APFI [Arabidopsis thaliana]
          Length = 278

 Score =  176 bits (445), Expect = 5e-43
 Identities = 89/208 (42%), Positives = 128/208 (60%)
 Frame = +2

Query: 197 GLVEGTLYGLGSLFRGVGAALDELGSMVQGPQGSVKDHVQPNLAFAPVHRKPDVPVNAGQ 376
           G +   +Y +G+  RG G ALD +GS++QG    +++H+  +     V  K         
Sbjct: 2   GTLGRAIYTVGNWIRGTGQALDRVGSLLQGSH-RIEEHLSRHRTLMNVFDKS-------- 52

Query: 377 VVPAPPAAARTLKIKEVVVPNKHSTAFVAANANVLGNVKLGAGSSVWYGAVLRGDVNGIE 556
                              P      FVA +A+V+G+V++G GSS+WYG VLRGDVN I 
Sbjct: 53  -------------------PLVDKDVFVAPSASVIGDVQIGKGSSIWYGCVLRGDVNNIS 93

Query: 557 VGANSNIQDNAIVHVSKYSMDGTARPTVIGNNVTIGHAATVHACTIEDNCLVGMGATVLD 736
           VG+ +NIQDN +VHV+K ++ G   PT+IG+NVT+GH+A +H CT+ED+  VGMGAT+LD
Sbjct: 94  VGSGTNIQDNTLVHVAKTTISGKVLPTLIGDNVTVGHSAVIHGCTVEDDAFVGMGATLLD 153

Query: 737 GATVKSGSIVAAGAVVPXNTTIPSGQVW 820
           G  V+  ++VAAG++V  NT IPSG+VW
Sbjct: 154 GVVVEKHAMVAAGSLVKQNTRIPSGEVW 181

>ref|NP_175159.1| transferase hexapeptide repeat family [Arabidopsis thaliana]
           gi|25405192|pir||D96513 unknown protein, 6976-8939
           [imported] - Arabidopsis thaliana
           gi|12325399|gb|AAG52641.1|AC079677_5 unknown protein;
           6976-8939 [Arabidopsis thaliana]
           gi|15028353|gb|AAK76653.1| unknown protein [Arabidopsis
           thaliana] gi|21280965|gb|AAM44984.1| unknown protein
           [Arabidopsis thaliana]
          Length = 278

 Score =  176 bits (445), Expect = 5e-43
 Identities = 89/208 (42%), Positives = 128/208 (60%)
 Frame = +2

Query: 197 GLVEGTLYGLGSLFRGVGAALDELGSMVQGPQGSVKDHVQPNLAFAPVHRKPDVPVNAGQ 376
           G +   +Y +G+  RG G ALD +GS++QG    +++H+  +     V  K         
Sbjct: 2   GTLGRAIYTVGNWIRGTGQALDRVGSLLQGSH-RIEEHLSRHRTLMNVFDKS-------- 52

Query: 377 VVPAPPAAARTLKIKEVVVPNKHSTAFVAANANVLGNVKLGAGSSVWYGAVLRGDVNGIE 556
                              P      FVA +A+V+G+V++G GSS+WYG VLRGDVN I 
Sbjct: 53  -------------------PLVDKDVFVAPSASVIGDVQIGKGSSIWYGCVLRGDVNNIS 93

Query: 557 VGANSNIQDNAIVHVSKYSMDGTARPTVIGNNVTIGHAATVHACTIEDNCLVGMGATVLD 736
           VG+ +NIQDN +VHV+K ++ G   PT+IG+NVT+GH+A +H CT+ED+  VGMGAT+LD
Sbjct: 94  VGSGTNIQDNTLVHVAKTNISGKVLPTLIGDNVTVGHSAVIHGCTVEDDAFVGMGATLLD 153

Query: 737 GATVKSGSIVAAGAVVPXNTTIPSGQVW 820
           G  V+  ++VAAG++V  NT IPSG+VW
Sbjct: 154 GVVVEKHAMVAAGSLVKQNTRIPSGEVW 181

>dbj|BAC16488.1| putative transcription factor APFI [Oryza sativa (japonica
           cultivar-group)]
          Length = 273

 Score =  173 bits (438), Expect = 4e-42
 Identities = 93/208 (44%), Positives = 124/208 (58%)
 Frame = +2

Query: 197 GLVEGTLYGLGSLFRGVGAALDELGSMVQGPQGSVKDHVQPNLAFAPVHRKPDVPVNAGQ 376
           G +   +Y  G   RG G A+D LGS +QG  G   D   P       HR          
Sbjct: 2   GTLGRAIYTAGKWIRGTGQAMDRLGSTIQG--GLRVDEQLPR------HR---------- 43

Query: 377 VVPAPPAAARTLKIKEVVVPNKHSTAFVAANANVLGNVKLGAGSSVWYGAVLRGDVNGIE 556
                      +  KE   P  H   FVA +A V+G++++G GSS+WYG++LRGDVN I 
Sbjct: 44  -------TIMNIFEKE---PRIHKDVFVAPSAAVIGDIEIGHGSSIWYGSILRGDVNSIH 93

Query: 557 VGANSNIQDNAIVHVSKYSMDGTARPTVIGNNVTIGHAATVHACTIEDNCLVGMGATVLD 736
           +G  +NIQDN++VHVSK ++ G   PT+IGN+VTIGH+A +HAC +ED   VGMGAT+LD
Sbjct: 94  IGVGTNIQDNSLVHVSKANISGKVLPTIIGNSVTIGHSAVLHACIVEDEAFVGMGATLLD 153

Query: 737 GATVKSGSIVAAGAVVPXNTTIPSGQVW 820
           G  V+  S+V AG++V  NT IPSG+VW
Sbjct: 154 GVVVEKHSMVGAGSLVKQNTRIPSGEVW 181

>ref|NP_569036.1| transferase hexapeptide repeat family [Arabidopsis thaliana]
           gi|15027855|gb|AAK76458.1| putative
           ferripyochelin-binding protein [Arabidopsis thaliana]
           gi|19310771|gb|AAL85116.1| putative
           ferripyochelin-binding protein [Arabidopsis thaliana]
           gi|21592980|gb|AAM64929.1| ferripyochelin-binding
           protein-like [Arabidopsis thaliana]
          Length = 258

 Score =  171 bits (434), Expect = 1e-41
 Identities = 95/208 (45%), Positives = 122/208 (57%)
 Frame = +2

Query: 197 GLVEGTLYGLGSLFRGVGAALDELGSMVQGPQGSVKDHVQPNLAFAPVHRKPDVPVNAGQ 376
           G +    Y +G   R  G ALD LG  +QG     K+H +  L+                
Sbjct: 2   GTMGKAFYSVGFWIRETGQALDRLGCRLQG-----KNHFREQLS---------------- 40

Query: 377 VVPAPPAAARTLKIKEVVVPNKHSTAFVAANANVLGNVKLGAGSSVWYGAVLRGDVNGIE 556
                    RTL       PN    AFVA NA++ G+V +G GSS+WYG VLRGD N I 
Sbjct: 41  -------RHRTLMNVFDKTPNVDKGAFVAPNASLSGDVHVGRGSSIWYGCVLRGDANSIS 93

Query: 557 VGANSNIQDNAIVHVSKYSMDGTARPTVIGNNVTIGHAATVHACTIEDNCLVGMGATVLD 736
           VGA +NIQDNA+VHV+K ++ G   PTVIG+NVTIGH+A +H CT+ED   +G  ATVLD
Sbjct: 94  VGAGTNIQDNALVHVAKTNLSGKVLPTVIGDNVTIGHSAVLHGCTVEDEAYIGTSATVLD 153

Query: 737 GATVKSGSIVAAGAVVPXNTTIPSGQVW 820
           GA V+  ++VA+GA+V  NT IPSG+VW
Sbjct: 154 GAHVEKHAMVASGALVRQNTRIPSGEVW 181

>gb|AAM61583.1| unknown [Arabidopsis thaliana]
          Length = 275

 Score =  169 bits (428), Expect = 5e-41
 Identities = 91/208 (43%), Positives = 123/208 (58%)
 Frame = +2

Query: 197 GLVEGTLYGLGSLFRGVGAALDELGSMVQGPQGSVKDHVQPNLAFAPVHRKPDVPVNAGQ 376
           G +    Y +G   R  G ALD LG  +QG     K++ +  L+                
Sbjct: 2   GTLGRAFYSVGFWIRETGQALDRLGCRLQG-----KNYFREQLS---------------- 40

Query: 377 VVPAPPAAARTLKIKEVVVPNKHSTAFVAANANVLGNVKLGAGSSVWYGAVLRGDVNGIE 556
                    RTL       P     AFVA +A+V+G+V +G GSS+WYG VLRGDVN + 
Sbjct: 41  -------RHRTLMNVFDKAPIVDKDAFVAPSASVIGDVHIGRGSSIWYGCVLRGDVNTVS 93

Query: 557 VGANSNIQDNAIVHVSKYSMDGTARPTVIGNNVTIGHAATVHACTIEDNCLVGMGATVLD 736
           VG+ +NIQDN++VHV+K ++ G   PT+IG+NVTIGH+A +H CT+ED   +GMGAT+LD
Sbjct: 94  VGSGTNIQDNSLVHVAKSNLSGKVHPTIIGDNVTIGHSAVLHGCTVEDETFIGMGATLLD 153

Query: 737 GATVKSGSIVAAGAVVPXNTTIPSGQVW 820
           G  V+   +VAAGA+V  NT IPSG+VW
Sbjct: 154 GVVVEKHGMVAAGALVRQNTRIPSGEVW 181



EST assemble image


clone accession position
1 LC092e09_r AV625436 1 386
2 CM055b04_r AV390256 14 583
3 LC040d03_r AV621741 20 550
4 LC092h06_r AV625457 21 365
5 LCL036h09_r AV628114 25 547
6 LC077c06_r AV624400 26 472
7 LC092e12_r AV625439 26 508
8 HC024h05_r AV633757 29 509
9 HC025f10_r AV633819 29 528
10 HC090b05_r AV638736 29 461
11 HC096g05_r AV639240 33 534
12 MX056h05_r BP088302 34 505
13 LC072b08_r AV624043 38 559
14 CM098a08_r AV392913 38 479
15 MX046d06_r BP087907 39 225
16 LC031a05_r AV621085 40 625
17 LC001g07_r AV618949 40 556
18 HC080a04_r AV637963 41 478
19 MX066b01_r BP088663 43 310
20 HC071d02_r AV637301 45 577
21 LC092f09_r AV625444 49 522
22 LC057f09_r AV623004 72 610
23 MX021b06_r BP086947 92 497
24 HC042h09_r AV635180 93 626
25 CM057e08_r AV390428 284 849




Chlamydomonas reinhardtii
Kazusa DNA Research Institute