KCC001487A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001487A_C01 KCC001487A_c01
cgcactgcaaagcaggaatgcttggttggctatgcctcagactgcaagaggctgggcact
tgttgctgtgacgaggcacaCTCGGCATAGGGACGCTTGCCTTGCCATTTGCTACGCTGA
CAGGCGAAGCCAGACTCCACGACTTGTGAGTGTGTGTGTGTGCGAGGTGAAGTAGCGAGT
ATGCAAACGTGCAAAAAGTTTTGTTTCTGTGTGCCAAAGGGAAGGGAGATGGGAACATTG
CACGAGGTTACGTGCGGGACGGCAAGCAAGAGTGCGAGTGTTTGTCAGTGAGTGTGTGCG
AGTGTGCAACACACATCGTGGTGTGCGCAGTGCGTTGTGTTTTTGGTTGCGAAGCTAGTG
CATGCATGGGCCTTGTCGCGGCATCTCCGCAGAGTGCGCGCCCTGAGATTACTGGATTCT
TTTCCCGAAGATGAGCGTCCCGAGGAGCAGGAGCGGAGTGGACGCCTTCACGAGTTGAGC
GGAAGGTGAGAGACGGGTGATCGCGGGTGTTCAAGCAGGCAGTGAGCTGGAGGCTGCAGT
GAGCTGAGCTGAAGAGTGACAGTCAGGCATGACGACTGAACGGGTAGAGGCAATAAGCAA
CAGGTGGAGGCGAGGGTGCACAGGAGGCTTCGTCTGCCTGTGCCGTGGCCATGGCAGGCA
CCAAACGGAGTAAACGTCGTTAGTCATTTGCCCAGTAGGGGCTTGCGGGGGAGGGCAAGA
GGTGATTGGGTAACCCCACGCAGGGTATTGGCGCTGCAAGTCGGTTTAGGCAGTGTGCCT
CGCTTCGTTGCACTGCACGTTTGACACAAGATAATAAAGGTTTTTTGATGTCCAGATTGT
ACAGGTGAGAATTGCGTAGACACATCCTGGGAGACCTGTTGTGTTTGCATCAAGACCATT
GGAGCACGCTGTGTACGGCAGTGTGTGCGTGTGGATTTGGTATGGCAATTTCTGCGTGCA
GGTTTGATGACTTGTTTCCAGGGTTTGAGGTGGCGGGGCTAGCGCGACCGCCATGGACAA
CGGCCTGGTGCCTGTGATCCTAAATTTAGTTATAACGTATTCAAATGGTTGCCCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001487A_C01 KCC001487A_c01
         (1075 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC10205.1| hypothetical protein [Oryza sativa (japonica cul...    39  0.20
pir||A30350 dorsal protein - fruit fly (Drosophila melanogaster)...    37  0.59
ref|NP_724052.1| dorsal CG6667-PA [Drosophila melanogaster] gi|2...    37  0.59
ref|XP_313561.1| ENSANGP00000013331 [Anopheles gambiae] gi|21296...    36  1.0
dbj|BAC86735.1| unnamed protein product [Homo sapiens]                 36  1.0

>dbj|BAC10205.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 175

 Score = 38.5 bits (88), Expect = 0.20
 Identities = 32/104 (30%), Positives = 45/104 (42%), Gaps = 11/104 (10%)
 Frame = -1

Query: 289 TDKHSHSCLPSRT*PRAMFPSPFPLAHRNKTFCTFAY--------SLLHLAHTHTHKSWS 134
           ++ H  + L SR  PR + P   P A  +   C  AY        S+LH   T  H + S
Sbjct: 4   SNTHPRATLTSRCQPRKLTPHRPPAAPSHINSCRAAYRRRRPHATSMLHSPATSLHPALS 63

Query: 133 LASPVSVANGKASVPMPSVPRHSNKC---PASCSLRHSQPSIPA 11
              P+      A +P+PSVP   ++     A C   H+QP  PA
Sbjct: 64  -THPLPATG--AGLPLPSVPSTRSRPWAPTARCHPHHTQPPSPA 104

>pir||A30350 dorsal protein - fruit fly (Drosophila melanogaster)
           gi|157283|gb|AAA28479.1| dorsal protein
          Length = 678

 Score = 37.0 bits (84), Expect = 0.59
 Identities = 37/156 (23%), Positives = 64/156 (40%), Gaps = 12/156 (7%)
 Frame = -1

Query: 490 LTFRSTREGVHSAPAPRD--------AHLREKNPVISGRALCGDAATRPMHALASQPKTQ 335
           +  R   +GV S   P +        AHLR K     G          PMH L  Q + Q
Sbjct: 306 IQLRRPSDGVTSEALPFEYVPMDSDPAHLRRKRQKTGGD---------PMHLLLQQQQKQ 356

Query: 334 RTAHTTMCVAHSHTLTDKHSHSCLPSRT*PRAMFPSPFPLAHRNKTFCTFAYSLLHLAHT 155
           +  +       ++ +   ++ +  P +T PR   P PF L++R     T +   L  +  
Sbjct: 357 QLQNDHQDGRQTN-MNCWNTQNIPPIKTEPRDTSPQPFGLSYRAPPELTPSPQPLSPSSN 415

Query: 154 HTHKS----WSLASPVSVANGKASVPMPSVPRHSNK 59
           + H S    +++AS V+  NG+  +  P+ P+   +
Sbjct: 416 YNHNSTPSPYNMASAVTPTNGQQQLMSPNHPQQQQQ 451

>ref|NP_724052.1| dorsal CG6667-PA [Drosophila melanogaster]
           gi|24584824|ref|NP_724053.1| dorsal CG6667-PB
           [Drosophila melanogaster] gi|7298385|gb|AAF53610.1|
           CG6667-PB [Drosophila melanogaster]
           gi|7298386|gb|AAF53611.1| CG6667-PA [Drosophila
           melanogaster]
          Length = 677

 Score = 37.0 bits (84), Expect = 0.59
 Identities = 37/156 (23%), Positives = 64/156 (40%), Gaps = 12/156 (7%)
 Frame = -1

Query: 490 LTFRSTREGVHSAPAPRD--------AHLREKNPVISGRALCGDAATRPMHALASQPKTQ 335
           +  R   +GV S   P +        AHLR K     G          PMH L  Q + Q
Sbjct: 306 IQLRRPSDGVTSEALPFEYVPMDSDPAHLRRKRQKTGGD---------PMHLLLQQQQKQ 356

Query: 334 RTAHTTMCVAHSHTLTDKHSHSCLPSRT*PRAMFPSPFPLAHRNKTFCTFAYSLLHLAHT 155
           +  +       ++ +   ++ +  P +T PR   P PF L++R     T +   L  +  
Sbjct: 357 QLQNDHQDGRQTN-MNCWNTQNIPPIKTEPRDTSPQPFGLSYRAPPELTPSPQPLSPSSN 415

Query: 154 HTHKS----WSLASPVSVANGKASVPMPSVPRHSNK 59
           + H S    +++AS V+  NG+  +  P+ P+   +
Sbjct: 416 YNHNSTPSPYNMASAVTPTNGQQQLMSPNHPQQQQQ 451

>ref|XP_313561.1| ENSANGP00000013331 [Anopheles gambiae] gi|21296916|gb|EAA09061.1|
           ENSANGP00000013331 [Anopheles gambiae str. PEST]
          Length = 309

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = -1

Query: 637 ADEASCAPSPPPVAYCLYPFSRHA*LSLFSSAHCSLQLTACLNTRDHPSLTFRSTREGVH 458
           ADE  C P+P P   C  P  R A +S+  S+  +  +  C   +++   T  S+   V 
Sbjct: 56  ADEDDCHPTPAPPPVCADPICRAAAISI--SSRMNWDVEPCREFKNYSCSTMESSLRAVK 113

Query: 457 SAPAPRDAHLRE 422
           SA    DA +++
Sbjct: 114 SAQELADAQMQQ 125

>dbj|BAC86735.1| unnamed protein product [Homo sapiens]
          Length = 175

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 22/63 (34%), Positives = 29/63 (45%), Gaps = 3/63 (4%)
 Frame = -1

Query: 325 HTTMCVAHSHTLTDKHSHSCLPSRT*PRAMFPSPFPLAHRNKTFCTFAYSLLHL---AHT 155
           HT +C  H+HTLT  H H+C   RT  +    +     H     CT  +  +H     HT
Sbjct: 78  HTHICT-HAHTLTYTHIHTCTYKRTYIQGHIHTHM---HTYTCTCTHTHKHIHAHIHIHT 133

Query: 154 HTH 146
           HTH
Sbjct: 134 HTH 136



EST assemble image


clone accession position
1 MX242h10_r BP091703 1 490
2 CM054d09_r AV389995 132 458
3 CM097b03_r AV393215 192 714
4 LC082e11_r AV624777 376 929
5 HC018b09_r AV633217 616 1075
6 MX236a07_r BP091252 617 1034




Chlamydomonas reinhardtii
Kazusa DNA Research Institute