KCC001477A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001477A_C01 KCC001477A_c01
ccattatatgcaTCCGAATCCAAACATAGCACAGCTATCATCCCGGTAACCAAATATTGA
CAGCGTTCCCTGCATCTCCCGCCACGCCTGCATAATAAGCACCCTAGACTTCTCATTTAC
CTGTCACTAAGCAATAAAAGAATGAGCTCGGGCCCACGGAATGAGAACGAGGTGCTTCAA
GAGTTCCAGGCTCGGCGGGAGCGCATCCAAGTGACTTGGACAAAGATCATGGAGCTAGGG
GCTGAAGCAACAGAGCACCAACTGGTGATGGACGCGCTCCAGAAGCTGGATAAGGACCGG
AAGGTGCTTCCGGCTGGTGGGCGACGTGCTGGTGGAGCGGACAGTGGGCGAGACGGTGCC
GGCGGTATTGAAGAACCGCGACAACCTGAAGAGCACGATTGAGTCGTTCCAAAAGCAGCT
GGACATTCAGAAAAAGGAGCTGGCGGAGTTCCAGGAGAAGTACAAGATCCGGGTGCGCTC
GGAGAGCGACGTGGCGGCGGAGGAGGCGGCCGCGGCAAGGGCCAAGGAGGGTGCCAAGGC
GGCCGCGGCGCAGCAGGGCGTGCTGGTCTCCAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001477A_C01 KCC001477A_c01
         (573 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF36151.1|AF151065_1 HSPC231 [Homo sapiens]                        79  4e-14
ref|NP_036526.2| prefoldin 2 [Homo sapiens] gi|12643887|sp|Q9UHV...    79  4e-14
gb|AAD47084.1|AF165883_1 prefoldin subunit 2 [Homo sapiens]            79  4e-14
dbj|BAC56444.1| similar to prefoldin subunit 2 [Bos taurus]            79  4e-14
ref|NP_035200.2| prefoldin 2 [Mus musculus] gi|22261812|sp|O7059...    79  6e-14

>gb|AAF36151.1|AF151065_1 HSPC231 [Homo sapiens]
          Length = 106

 Score = 79.0 bits (193), Expect = 4e-14
 Identities = 43/92 (46%), Positives = 60/92 (64%)
 Frame = +2

Query: 296 TGRCFRLVGDVLVERTVGETVPAVLKNRDNLKSTIESFQKQLDIQKKELAEFQEKYKIRV 475
           T +C+R+VG VLVERTV E +PA+  N++ ++  IE+  +QL  + KEL EF+EK+ IR+
Sbjct: 19  TRKCYRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRL 78

Query: 476 RSESDVAAEEAAAARAKEGAKAAAAQQGVLVS 571
             E     E+ AA    EGA A A+  GVLVS
Sbjct: 79  MGED----EKPAAKENSEGAGAKASSAGVLVS 106

>ref|NP_036526.2| prefoldin 2 [Homo sapiens] gi|12643887|sp|Q9UHV9|PFD2_HUMAN
           Prefoldin subunit 2 (HSPC231)
           gi|6563248|gb|AAF17218.1|AF117237_1 prefoldin subunit 2
           [Homo sapiens] gi|15214670|gb|AAH12464.1| Prefoldin 2
           [Homo sapiens] gi|28461370|gb|AAH47042.1| Prefoldin 2
           [Homo sapiens]
          Length = 154

 Score = 79.0 bits (193), Expect = 4e-14
 Identities = 43/92 (46%), Positives = 60/92 (64%)
 Frame = +2

Query: 296 TGRCFRLVGDVLVERTVGETVPAVLKNRDNLKSTIESFQKQLDIQKKELAEFQEKYKIRV 475
           T +C+R+VG VLVERTV E +PA+  N++ ++  IE+  +QL  + KEL EF+EK+ IR+
Sbjct: 67  TRKCYRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRL 126

Query: 476 RSESDVAAEEAAAARAKEGAKAAAAQQGVLVS 571
             E     E+ AA    EGA A A+  GVLVS
Sbjct: 127 MGED----EKPAAKENSEGAGAKASSAGVLVS 154

>gb|AAD47084.1|AF165883_1 prefoldin subunit 2 [Homo sapiens]
          Length = 155

 Score = 79.0 bits (193), Expect = 4e-14
 Identities = 43/92 (46%), Positives = 60/92 (64%)
 Frame = +2

Query: 296 TGRCFRLVGDVLVERTVGETVPAVLKNRDNLKSTIESFQKQLDIQKKELAEFQEKYKIRV 475
           T +C+R+VG VLVERTV E +PA+  N++ ++  IE+  +QL  + KEL EF+EK+ IR+
Sbjct: 68  TRKCYRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRL 127

Query: 476 RSESDVAAEEAAAARAKEGAKAAAAQQGVLVS 571
             E     E+ AA    EGA A A+  GVLVS
Sbjct: 128 MGED----EKPAAKENSEGAGAKASSAGVLVS 155

>dbj|BAC56444.1| similar to prefoldin subunit 2 [Bos taurus]
          Length = 152

 Score = 79.0 bits (193), Expect = 4e-14
 Identities = 43/92 (46%), Positives = 60/92 (64%)
 Frame = +2

Query: 296 TGRCFRLVGDVLVERTVGETVPAVLKNRDNLKSTIESFQKQLDIQKKELAEFQEKYKIRV 475
           T +C+R+VG VLVERTV E +PA+  N++ ++  IE+  +QL  + KEL EF+EK+ IR+
Sbjct: 65  TRKCYRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRL 124

Query: 476 RSESDVAAEEAAAARAKEGAKAAAAQQGVLVS 571
             E     E+ AA    EGA A A+  GVLVS
Sbjct: 125 MGED----EKPAAKENSEGAGAKASSAGVLVS 152

>ref|NP_035200.2| prefoldin 2 [Mus musculus] gi|22261812|sp|O70591|PFD2_MOUSE
           Prefoldin subunit 2 gi|20070918|gb|AAH26839.1| Prefoldin
           2 [Mus musculus] gi|29612494|gb|AAH49606.1| Similar to
           prefoldin 2 [Mus musculus]
          Length = 154

 Score = 78.6 bits (192), Expect = 6e-14
 Identities = 43/92 (46%), Positives = 60/92 (64%)
 Frame = +2

Query: 296 TGRCFRLVGDVLVERTVGETVPAVLKNRDNLKSTIESFQKQLDIQKKELAEFQEKYKIRV 475
           T +C+R+VG VLVERTV E +PA+  N++ ++  IE+  +QL  + KEL EF+EK+ IR+
Sbjct: 67  TRKCYRMVGGVLVERTVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRL 126

Query: 476 RSESDVAAEEAAAARAKEGAKAAAAQQGVLVS 571
             E     E+ AA    EGA A A+  GVLVS
Sbjct: 127 MGED----EKPAAKENSEGAGAKASSAGVLVS 154



EST assemble image


clone accession position
1 LC052a04_r AV622617 1 504
2 MXL062a04_r BP096625 13 414
3 LC001d08_r AV618922 23 501
4 LC027d03_r AV620826 25 504
5 LC030h06_r AV621077 29 367
6 CM053c02_r AV389916 37 576
7 LC087h11_r AV389916 45 492




Chlamydomonas reinhardtii
Kazusa DNA Research Institute