KCC001476A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001476A_C01 KCC001476A_c01
TCGGCCGGGTGTTGAGTGCCTACGTTCGTTGTGCGAATGCAGCTCCAGCAGAAGGCTCTG
CGTCTGCAGTCGACATTTCCTACCCGGGTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTC
GCTGCTCCCGAGAAGGCTGCTGTTAAGATGAACATCGCCACCGATGTCACCGAGCTGATT
GGCAAGACCCCTATGGTCTACCTGAACAAGGTGGCCACGGGCACGCACGCCAAGATCGCC
GCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAGGATCGGCTACAGCATG
ATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAGACTGTCCTGGTGGAGCCC
ACCTCGGGTAACACCGGCATCGGTCTGGCCTTCATCGCCGCCGCCCGCGGCTACAAGCTC
ATCCTGACCATGCCCGCCTCCATGTCCCTGGAGCGCCGCATCCTGCTGCGTGCCTTCGGC
GCCGAGCTGGTGCTGACTGACCCCGCCAAGGGCATGAAGGGCGCCGTGGCCAAGGCCGAG
GAGATCCTGGCCTCCACGCCGGACGCCTTCATGCTGCAGCAGTTCCAGAACCCCAACAAC
CCCAAGGTGCACTACGAGACCACCGGCCCCGAGATCTGGAGCGCCACCGACGGCAAGGTC
GACATCCTGGTGTCGGGCGTGGGCACCGGCGGCACCATCACCGGCACCGGCCGCTACCTG
CGCGAGAAGAAGTCGGACGTGCAGCTGGTGGCTGTGGAGCCGGCCGAGAGCCCCGTGCTC
AGCGGCGGCAAGCCCGGCCCCCACAAGATCCAGGGCATCGGCGCCGGCTTTGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001476A_C01 KCC001476A_c01
         (833 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T07962 probable cysteine synthase (EC 4.2.99.8) 1A precurso...   485  e-136
dbj|BAB20862.1| plastidic cysteine synthase 1 [Solanum tuberosum]     383  e-105
sp|O81155|CYSL_SOLTU Cysteine synthase, chloroplast precursor (O...   383  e-105
gb|AAL66291.1|AF452451_1 cysteine synthase [Glycine max]              376  e-103
sp|P32260|CYSL_SPIOL Cysteine synthase, chloroplast precursor (O...   372  e-102

>pir||T07962 probable cysteine synthase (EC 4.2.99.8) 1A precursor -
           Chlamydomonas reinhardtii gi|3342569|gb|AAC27794.1|
           putative O-acetylserine(thiol)lyase precursor
           [Chlamydomonas reinhardtii]
          Length = 352

 Score =  485 bits (1249), Expect = e-136
 Identities = 248/249 (99%), Positives = 249/249 (99%)
 Frame = +1

Query: 85  RVSRVALVPKAVAAPEKAAVKMNIATDVTELIGKTPMVYLNKVATGTHAKIAAKLEIMEP 264
           +VSRVALVPKAVAAPEKAAVKMNIATDVTELIGKTPMVYLNKVATGTHAKIAAKLEIMEP
Sbjct: 10  QVSRVALVPKAVAAPEKAAVKMNIATDVTELIGKTPMVYLNKVATGTHAKIAAKLEIMEP 69

Query: 265 CCSVKDRIGYSMISSAEKEGLITPGKTVLVEPTSGNTGIGLAFIAAARGYKLILTMPASM 444
           CCSVKDRIGYSMISSAEKEGLITPGKTVLVEPTSGNTGIGLAFIAAARGYKLILTMPASM
Sbjct: 70  CCSVKDRIGYSMISSAEKEGLITPGKTVLVEPTSGNTGIGLAFIAAARGYKLILTMPASM 129

Query: 445 SLERRILLRAFGAELVLTDPAKGMKGAVAKAEEILASTPDAFMLQQFQNPNNPKVHYETT 624
           SLERRILLRAFGAELVLTDPAKGMKGAVAKAEEILASTPDAFMLQQFQNPNNPKVHYETT
Sbjct: 130 SLERRILLRAFGAELVLTDPAKGMKGAVAKAEEILASTPDAFMLQQFQNPNNPKVHYETT 189

Query: 625 GPEIWSATDGKVDILVSGVGTGGTITGTGRYLREKKSDVQLVAVEPAESPVLSGGKPGPH 804
           GPEIWSATDGKVDILVSGVGTGGTITGTGRYLREKKSDVQLVAVEPAESPVLSGGKPGPH
Sbjct: 190 GPEIWSATDGKVDILVSGVGTGGTITGTGRYLREKKSDVQLVAVEPAESPVLSGGKPGPH 249

Query: 805 KIQGIGAGF 831
           KIQGIGAGF
Sbjct: 250 KIQGIGAGF 258

>dbj|BAB20862.1| plastidic cysteine synthase 1 [Solanum tuberosum]
          Length = 386

 Score =  383 bits (983), Expect = e-105
 Identities = 188/252 (74%), Positives = 223/252 (87%), Gaps = 3/252 (1%)
 Frame = +1

Query: 85  RVSRVALVPKAVAAPEKAAVK---MNIATDVTELIGKTPMVYLNKVATGTHAKIAAKLEI 255
           +V+  ++V KAV+ P K++ +   +NIA DVT+LIG TPMVYLN +A G  A IAAKLEI
Sbjct: 43  KVAFPSVVCKAVSVPTKSSTEIEGLNIAEDVTQLIGNTPMVYLNTIAKGCVANIAAKLEI 102

Query: 256 MEPCCSVKDRIGYSMISSAEKEGLITPGKTVLVEPTSGNTGIGLAFIAAARGYKLILTMP 435
           MEPCCSVKDRIG+SMI  AE++GLI+PGKTVLVEPTSGNTGIGLAFIAA+RGYKLILTMP
Sbjct: 103 MEPCCSVKDRIGFSMIVDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMP 162

Query: 436 ASMSLERRILLRAFGAELVLTDPAKGMKGAVAKAEEILASTPDAFMLQQFQNPNNPKVHY 615
           ASMSLERR++L+AFGAELVLTDPAKGMKGAV+KAEEIL +TPDA++LQQF NP NPK+HY
Sbjct: 163 ASMSLERRVILKAFGAELVLTDPAKGMKGAVSKAEEILNNTPDAYILQQFDNPANPKIHY 222

Query: 616 ETTGPEIWSATDGKVDILVSGVGTGGTITGTGRYLREKKSDVQLVAVEPAESPVLSGGKP 795
           ETTGPEIW  T GK+DILV+G+GTGGTITGTGR+L+E+  +++++ VEP ES VLSGGKP
Sbjct: 223 ETTGPEIWEDTKGKIDILVAGIGTGGTITGTGRFLKEQNPNIKIIGVEPTESNVLSGGKP 282

Query: 796 GPHKIQGIGAGF 831
           GPHKIQGIGAGF
Sbjct: 283 GPHKIQGIGAGF 294

>sp|O81155|CYSL_SOLTU Cysteine synthase, chloroplast precursor (O-acetylserine
           sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase B)
           (CS-B) (OAS-TL B) gi|7436944|pir||T07002 cysteine
           synthase (EC 4.2.99.8) precursor, chloroplast - potato
           gi|3290022|gb|AAC25636.1| cysteine synthase; CS-B;
           O-acetylserine (thiol) lyase; plastidic isoform [Solanum
           tuberosum]
          Length = 386

 Score =  383 bits (983), Expect = e-105
 Identities = 188/252 (74%), Positives = 223/252 (87%), Gaps = 3/252 (1%)
 Frame = +1

Query: 85  RVSRVALVPKAVAAPEKAAVK---MNIATDVTELIGKTPMVYLNKVATGTHAKIAAKLEI 255
           +V+  ++V KAV+ P K++ +   +NIA DVT+LIG TPMVYLN +A G  A IAAKLEI
Sbjct: 43  KVAFPSVVCKAVSVPTKSSTEIEGLNIAEDVTQLIGNTPMVYLNTIAKGCVANIAAKLEI 102

Query: 256 MEPCCSVKDRIGYSMISSAEKEGLITPGKTVLVEPTSGNTGIGLAFIAAARGYKLILTMP 435
           MEPCCSVKDRIG+SMI  AE++GLI+PGKTVLVEPTSGNTGIGLAFIAA+RGYKLILTMP
Sbjct: 103 MEPCCSVKDRIGFSMIVDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMP 162

Query: 436 ASMSLERRILLRAFGAELVLTDPAKGMKGAVAKAEEILASTPDAFMLQQFQNPNNPKVHY 615
           ASMSLERR++L+AFGAELVLTDPAKGMKGAV+KAEEIL +TPDA++LQQF NP NPK+HY
Sbjct: 163 ASMSLERRVILKAFGAELVLTDPAKGMKGAVSKAEEILNNTPDAYILQQFDNPANPKIHY 222

Query: 616 ETTGPEIWSATDGKVDILVSGVGTGGTITGTGRYLREKKSDVQLVAVEPAESPVLSGGKP 795
           ETTGPEIW  T GK+DILV+G+GTGGTITGTGR+L+E+  +++++ VEP ES VLSGGKP
Sbjct: 223 ETTGPEIWEDTKGKIDILVAGIGTGGTITGTGRFLKEQNPNIKIIGVEPTESNVLSGGKP 282

Query: 796 GPHKIQGIGAGF 831
           GPHKIQGIGAGF
Sbjct: 283 GPHKIQGIGAGF 294

>gb|AAL66291.1|AF452451_1 cysteine synthase [Glycine max]
          Length = 325

 Score =  376 bits (965), Expect = e-103
 Identities = 181/232 (78%), Positives = 209/232 (90%)
 Frame = +1

Query: 136 AAVKMNIATDVTELIGKTPMVYLNKVATGTHAKIAAKLEIMEPCCSVKDRIGYSMISSAE 315
           A  +  IA DVTELIGKTP+VYLNK+A G  A++AAKLE+MEPC SVKDRIGYSMI+ AE
Sbjct: 2   AVERSGIAKDVTELIGKTPLVYLNKLADGCVARVAAKLELMEPCSSVKDRIGYSMIADAE 61

Query: 316 KEGLITPGKTVLVEPTSGNTGIGLAFIAAARGYKLILTMPASMSLERRILLRAFGAELVL 495
           ++GLITPGK+VL+EPTSGNTGIGLAF+AAARGYKLI+TMPASMSLERRI+L AFGAELVL
Sbjct: 62  EKGLITPGKSVLIEPTSGNTGIGLAFMAAARGYKLIITMPASMSLERRIILLAFGAELVL 121

Query: 496 TDPAKGMKGAVAKAEEILASTPDAFMLQQFQNPNNPKVHYETTGPEIWSATDGKVDILVS 675
           TDPAKGMKGAV KAEEILA TP+A++LQQF+NP NPKVHYETTGPEIW  +DGK+D  VS
Sbjct: 122 TDPAKGMKGAVQKAEEILAKTPNAYILQQFENPANPKVHYETTGPEIWKGSDGKIDAFVS 181

Query: 676 GVGTGGTITGTGRYLREKKSDVQLVAVEPAESPVLSGGKPGPHKIQGIGAGF 831
           G+GTGGTITG G+YL+E+  +++L+ VEP ESPVLSGGKPGPHKIQGIGAGF
Sbjct: 182 GIGTGGTITGAGKYLKEQNPNIKLIGVEPVESPVLSGGKPGPHKIQGIGAGF 233

>sp|P32260|CYSL_SPIOL Cysteine synthase, chloroplast precursor (O-acetylserine
           sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase B)
           (CS-B) (OAS-TL B)
          Length = 383

 Score =  372 bits (956), Expect = e-102
 Identities = 182/250 (72%), Positives = 212/250 (84%), Gaps = 1/250 (0%)
 Frame = +1

Query: 85  RVSRVALVPKAVA-APEKAAVKMNIATDVTELIGKTPMVYLNKVATGTHAKIAAKLEIME 261
           +VS   +  KAV+ +P      +NIA DV++LIGKTPMVYLN V+ G+ A IAAKLE ME
Sbjct: 43  KVSSSPITCKAVSLSPPSTIEGLNIAEDVSQLIGKTPMVYLNNVSKGSVANIAAKLESME 102

Query: 262 PCCSVKDRIGYSMISSAEKEGLITPGKTVLVEPTSGNTGIGLAFIAAARGYKLILTMPAS 441
           PCCSVKDRIGYSMI  AE++G+ITPGKT LVEPTSGNTGIGLAFIAAARGYK+ LTMPAS
Sbjct: 103 PCCSVKDRIGYSMIDDAEQKGVITPGKTTLVEPTSGNTGIGLAFIAAARGYKITLTMPAS 162

Query: 442 MSLERRILLRAFGAELVLTDPAKGMKGAVAKAEEILASTPDAFMLQQFQNPNNPKVHYET 621
           MS+ERR++L+AFGAELVLTDPAKGMKGAV KAEEIL  TPD++MLQQF NP NPK+HYET
Sbjct: 163 MSMERRVILKAFGAELVLTDPAKGMKGAVEKAEEILKKTPDSYMLQQFDNPANPKIHYET 222

Query: 622 TGPEIWSATDGKVDILVSGVGTGGTITGTGRYLREKKSDVQLVAVEPAESPVLSGGKPGP 801
           TGPEIW  T GKVDI V+G+GTGGTI+G GRYL+E+   VQ++ +EP ES +LSGGKPGP
Sbjct: 223 TGPEIWEDTKGKVDIFVAGIGTGGTISGVGRYLKERNPGVQVIGIEPTESNILSGGKPGP 282

Query: 802 HKIQGIGAGF 831
           HKIQG+GAGF
Sbjct: 283 HKIQGLGAGF 292



EST assemble image


clone accession position
1 MX025a11_r BP087096 1 470
2 CM056h06_r AV390281 76 553
3 MX222e08_r BP090343 84 274
4 LC058h10_r AV623100 89 560
5 CM053a08_r AV389945 101 659
6 LC084h10_r AV624949 104 629
7 LC068a06_r AV623739 412 938




Chlamydomonas reinhardtii
Kazusa DNA Research Institute