KCC001469A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001469A_C01 KCC001469A_c01
AGGTATATTACTTTGTACTGAGGCAAGAACCAGGGCCAGAAGGCCCGCGTGTTTGCCTAT
TAGAGTTGCATCCTTCTTCCCTGAAGATTTGCCCTCAGCAACCATGAATCCCATCAATGG
CCTGAAGACTATTCTGCATCGCGTGGGCTTTGCCATGCGGGAGAGCGGCCAGGCGCTGGA
GCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGCTGAACCGGCACGC
CACGGTCCTGCCCATGCGCCACAACGTGCCTAGCCTGGACAAGACCTCTTGGGTGGCGCC
CTCGGGCATGGTCTCGGGCAGCGTGACGCTTGGCGAGAACAGCTCCGTTTGGTATGGGGC
CATCGTTCGCGGCGACTTCCAGCCAGTGGTCGTGGGCTCGAACAGCAACATTCAGGATGC
AGCCTACGTGGGCGCCACCAGCGAGTTCAGCGGGCCAGTGACCATTGGTGACAACGTTTC
GGTTGGACATGGCGCGGTGCTGAAGGGCTGCACGGTCGGGGACAACGTGCTCATCGGCAT
GAACTCGATTATTTCGGAGCACGCTGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001469A_C01 KCC001469A_c01
         (568 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM61583.1| unknown [Arabidopsis thaliana]                         142  4e-33
ref|NP_564091.1| transferase hexapeptide repeat family [Arabidop...   142  4e-33
dbj|BAB39954.1| contains ESTs AU062927(C51629),AU030693(E60120)~...   141  5e-33
ref|NP_569036.1| transferase hexapeptide repeat family [Arabidop...   140  2e-32
ref|NP_175159.1| transferase hexapeptide repeat family [Arabidop...   128  5e-29

>gb|AAM61583.1| unknown [Arabidopsis thaliana]
          Length = 275

 Score =  142 bits (357), Expect = 4e-33
 Identities = 73/143 (51%), Positives = 96/143 (67%), Gaps = 4/143 (2%)
 Frame = +2

Query: 137 HRVGFAMRESGQALERVGCRLQGVYSFEEKLNRHATVLPMRHNVPSLDKTSWVAPSGMVS 316
           + VGF +RE+GQAL+R+GCRLQG   F E+L+RH T++ +    P +DK ++VAPS  V 
Sbjct: 9   YSVGFWIRETGQALDRLGCRLQGKNYFREQLSRHRTLMNVFDKAPIVDKDAFVAPSASVI 68

Query: 317 GSVTLGENSSVWYGAIVRGDFQPVVVGSNSNIQDAAYVG-ATSEFSG---PVTIGDNVSV 484
           G V +G  SS+WYG ++RGD   V VGS +NIQD + V  A S  SG   P  IGDNV++
Sbjct: 69  GDVHIGRGSSIWYGCVLRGDVNTVSVGSGTNIQDNSLVHVAKSNLSGKVHPTIIGDNVTI 128

Query: 485 GHGAVLKGCTVGDNVLIGMNSII 553
           GH AVL GCTV D   IGM + +
Sbjct: 129 GHSAVLHGCTVEDETFIGMGATL 151

>ref|NP_564091.1| transferase hexapeptide repeat family [Arabidopsis thaliana]
           gi|25518562|pir||E86328 hypothetical protein F14P1.8 -
           Arabidopsis thaliana gi|9795586|gb|AAF98404.1|AC024609_5
           Unknown protein [Arabidopsis thaliana]
          Length = 275

 Score =  142 bits (357), Expect = 4e-33
 Identities = 73/143 (51%), Positives = 96/143 (67%), Gaps = 4/143 (2%)
 Frame = +2

Query: 137 HRVGFAMRESGQALERVGCRLQGVYSFEEKLNRHATVLPMRHNVPSLDKTSWVAPSGMVS 316
           + VGF +RE+GQAL+R+GCRLQG   F E+L+RH T++ +    P +DK ++VAPS  V 
Sbjct: 9   YSVGFWIRETGQALDRLGCRLQGKNYFREQLSRHRTLMNVFDKAPIVDKEAFVAPSASVI 68

Query: 317 GSVTLGENSSVWYGAIVRGDFQPVVVGSNSNIQDAAYVG-ATSEFSG---PVTIGDNVSV 484
           G V +G  SS+WYG ++RGD   V VGS +NIQD + V  A S  SG   P  IGDNV++
Sbjct: 69  GDVHIGRGSSIWYGCVLRGDVNTVSVGSGTNIQDNSLVHVAKSNLSGKVHPTIIGDNVTI 128

Query: 485 GHGAVLKGCTVGDNVLIGMNSII 553
           GH AVL GCTV D   IGM + +
Sbjct: 129 GHSAVLHGCTVEDETFIGMGATL 151

>dbj|BAB39954.1| contains ESTs AU062927(C51629),AU030693(E60120)~similar to
           Arabidopsis thaliana chromosome 1, F14P1.8~unknown
           protein [Oryza sativa (japonica cultivar-group)]
           gi|15408822|dbj|BAB64214.1| P0581F09.11 [Oryza sativa
           (japonica cultivar-group)]
          Length = 257

 Score =  141 bits (356), Expect = 5e-33
 Identities = 70/149 (46%), Positives = 100/149 (66%), Gaps = 4/149 (2%)
 Frame = +2

Query: 119 GLKTILHRVGFAMRESGQALERVGCRLQGVYSFEEKLNRHATVLPMRHNVPSLDKTSWVA 298
           GL    + VGF +RE+GQAL+R+GCRLQG Y F E+L+RH T++ +    P + + ++VA
Sbjct: 3   GLGKAFYAVGFWIRETGQALDRLGCRLQGNYYFHEQLSRHRTLMNIFDKTPHVHRDAFVA 62

Query: 299 PSGMVSGSVTLGENSSVWYGAIVRGDFQPVVVGSNSNIQDAAYVG-ATSEFSG---PVTI 466
           PS  + G + +G+ +S+WYG ++RGD   V +GS +NIQD + V  A S  SG   P  I
Sbjct: 63  PSASLIGDIQVGQGASIWYGCVLRGDANNVQIGSGTNIQDNSLVHVAKSNLSGKVFPTII 122

Query: 467 GDNVSVGHGAVLKGCTVGDNVLIGMNSII 553
           GDNV+VGH AVL+GCTV D   +GM + +
Sbjct: 123 GDNVTVGHSAVLQGCTVEDEAFVGMGATL 151

>ref|NP_569036.1| transferase hexapeptide repeat family [Arabidopsis thaliana]
           gi|15027855|gb|AAK76458.1| putative
           ferripyochelin-binding protein [Arabidopsis thaliana]
           gi|19310771|gb|AAL85116.1| putative
           ferripyochelin-binding protein [Arabidopsis thaliana]
           gi|21592980|gb|AAM64929.1| ferripyochelin-binding
           protein-like [Arabidopsis thaliana]
          Length = 258

 Score =  140 bits (352), Expect = 2e-32
 Identities = 70/147 (47%), Positives = 100/147 (67%), Gaps = 4/147 (2%)
 Frame = +2

Query: 137 HRVGFAMRESGQALERVGCRLQGVYSFEEKLNRHATVLPMRHNVPSLDKTSWVAPSGMVS 316
           + VGF +RE+GQAL+R+GCRLQG   F E+L+RH T++ +    P++DK ++VAP+  +S
Sbjct: 9   YSVGFWIRETGQALDRLGCRLQGKNHFREQLSRHRTLMNVFDKTPNVDKGAFVAPNASLS 68

Query: 317 GSVTLGENSSVWYGAIVRGDFQPVVVGSNSNIQDAAYVG-ATSEFSG---PVTIGDNVSV 484
           G V +G  SS+WYG ++RGD   + VG+ +NIQD A V  A +  SG   P  IGDNV++
Sbjct: 69  GDVHVGRGSSIWYGCVLRGDANSISVGAGTNIQDNALVHVAKTNLSGKVLPTVIGDNVTI 128

Query: 485 GHGAVLKGCTVGDNVLIGMNSIISEHA 565
           GH AVL GCTV D   IG ++ + + A
Sbjct: 129 GHSAVLHGCTVEDEAYIGTSATVLDGA 155

>ref|NP_175159.1| transferase hexapeptide repeat family [Arabidopsis thaliana]
           gi|25405192|pir||D96513 unknown protein, 6976-8939
           [imported] - Arabidopsis thaliana
           gi|12325399|gb|AAG52641.1|AC079677_5 unknown protein;
           6976-8939 [Arabidopsis thaliana]
           gi|15028353|gb|AAK76653.1| unknown protein [Arabidopsis
           thaliana] gi|21280965|gb|AAM44984.1| unknown protein
           [Arabidopsis thaliana]
          Length = 278

 Score =  128 bits (322), Expect = 5e-29
 Identities = 69/154 (44%), Positives = 97/154 (62%), Gaps = 10/154 (6%)
 Frame = +2

Query: 134 LHRVGFAMRESGQALERVGCRLQGVYSFEEKLNRHATVLPMRHNVPSLDKTSWVAPSGMV 313
           ++ VG  +R +GQAL+RVG  LQG +  EE L+RH T++ +    P +DK  +VAPS  V
Sbjct: 8   IYTVGNWIRGTGQALDRVGSLLQGSHRIEEHLSRHRTLMNVFDKSPLVDKDVFVAPSASV 67

Query: 314 SGSVTLGENSSVWYGAIVRGDFQPVVVGSNSNIQDAAYVG-ATSEFSG---PVTIGDNVS 481
            G V +G+ SS+WYG ++RGD   + VGS +NIQD   V  A +  SG   P  IGDNV+
Sbjct: 68  IGDVQIGKGSSIWYGCVLRGDVNNISVGSGTNIQDNTLVHVAKTNISGKVLPTLIGDNVT 127

Query: 482 VGHGAVLKGCTVGDNVLIGMNS------IISEHA 565
           VGH AV+ GCTV D+  +GM +      ++ +HA
Sbjct: 128 VGHSAVIHGCTVEDDAFVGMGATLLDGVVVEKHA 161



EST assemble image


clone accession position
1 HC090g10_r AV638787 1 517
2 LC076c11_r AV624335 126 686
3 CM052e07_r AV390549 157 684




Chlamydomonas reinhardtii
Kazusa DNA Research Institute