KCC001464A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001464A_C01 KCC001464A_c01
ctgacttgtccgtaatactttggctgtaagcgaataacagtacggtgtcacatgcgtagc
atgccaccactttacatgcgCTTCGGCCGTCAAGGGTGTGTGACTTCAGTTTGTTTCTGA
CGGGTGGTAAAGACGGCTTGTGCCCTGATGTGTTGATGTTTGGTGACGCTGCCATTGATG
TTTTGGACAGGCTGGCTTTACTTAGATGCAAGGGGTTCCGTCAGAACCCCGATACCTCCT
GACCAAGGAAAAGCCACGCAGTAGCCATGTTTATTCGCCCTGCCGGATCGGGGCACAGTA
CAGGTTGTTGAGGCACGTTGCCATGGGACGGTAGCCTTCATCGCATCAGGTGCACATCGA
CGCACTGCGCCACATATTGCTGATGCATATCATAGCAGAGTAACCATTTGAATGCGTTTG
AAACTGCTGGGCACCATTAGCATTGCAATCCTCTCTTGGCCGCACCGTGATGTTTGGAAA
TTGTGCACACGAGCCGCCACGGACCTTTCGTTGGCGTGCAAAATCTGTGCGCAAAGGGAC
ATGAGGCGGGGCCGGCGAAGGGCGTGGGATGAGTAACAGGTGCCGAGACCGGGAACGGCA
ACACGTAATAGCAACGGAATGAGATTGCAAAGTTATTGTCGCCCTATCAGAAACGGAGCT
GAGGGCGGTGAGCTGTATAGGTTGAATTTACGCGGTGCCATGCCGAAGGATAGACGGATC
CGTGAGTATCGAAATGGGTGTGGGTACGAGCACACACGGTGTTTAAGAAGCGCGCGACGC
AGCAGCAGCAAAACCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001464A_C01 KCC001464A_c01
         (796 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_595083.1| fructose-1,6-bisphosphatase [Schizosaccharomyce...    35  1.8
sp|P09202|F16P_SCHPO Fructose-1,6-bisphosphatase (D-fructose-1,6...    35  1.8
ref|NP_277083.1| putative minor capsid protein L2 [Human papillo...    34  2.4
ref|ZP_00130854.1| COG0295: Cytidine deaminase [Desulfovibrio de...    33  4.0
emb|CAE03697.1| OSJNBb0026E15.15 [Oryza sativa (japonica cultiva...    32  9.0

>ref|NP_595083.1| fructose-1,6-bisphosphatase [Schizosaccharomyces pombe]
           gi|7801321|emb|CAB91189.1| fbp1 [Schizosaccharomyces
           pombe]
          Length = 344

 Score = 34.7 bits (78), Expect = 1.8
 Identities = 20/43 (46%), Positives = 25/43 (57%)
 Frame = +2

Query: 626 CKVIVALSETELRAVSCIG*IYAVPCRRIDGSVSIEMGVGTST 754
           CK+IV+  E +L  V   G  YAV C  IDGS +I+ GV   T
Sbjct: 105 CKLIVSEEEEDLIVVDSNG-SYAVTCDPIDGSSNIDAGVSVGT 146

>sp|P09202|F16P_SCHPO Fructose-1,6-bisphosphatase (D-fructose-1,6-bisphosphate
           1-phosphohydrolase) (FBPase) gi|82800|pir||B28653
           fructose-bisphosphatase (EC 3.1.3.11) - fission yeast
           (Schizosaccharomyces pombe) gi|173386|gb|AAA35304.1|
           fructose-1,6-bisphosphatase gi|4049503|emb|CAA22524.1|
           SPBC660.04c [Schizosaccharomyces pombe]
          Length = 347

 Score = 34.7 bits (78), Expect = 1.8
 Identities = 20/43 (46%), Positives = 25/43 (57%)
 Frame = +2

Query: 626 CKVIVALSETELRAVSCIG*IYAVPCRRIDGSVSIEMGVGTST 754
           CK+IV+  E +L  V   G  YAV C  IDGS +I+ GV   T
Sbjct: 108 CKLIVSEEEEDLIVVDSNG-SYAVTCDPIDGSSNIDAGVSVGT 149

>ref|NP_277083.1| putative minor capsid protein L2 [Human papillomavirus type 86]
           gi|15741133|gb|AAL06740.1|AF349909_6 putative minor
           capsid protein L2 [Human papillomavirus type 86]
          Length = 478

 Score = 34.3 bits (77), Expect = 2.4
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
 Frame = -2

Query: 732 SILTDPSILR-HGTA*IQPIQLTALSSVS---DRATITLQSHSVAITCCRSRSRHLLLIP 565
           SIL +PS+   H T  +    ++A S VS   D  T+ L S +           H +  P
Sbjct: 368 SILQEPSVPSLHSTTPVSSATVSATSMVSSTYDNVTVPLSSATEVPLYTGPDIDHAIA-P 426

Query: 564 RPSPAPPHVPLRTDFARQRKVRGGSCAQFPNITVRPRE 451
            P+P PP VP  T +A    ++G      PN    PR+
Sbjct: 427 SPTPLPPVVPSTTPYAIY--IQGSDYYLLPNYIFFPRK 462

>ref|ZP_00130854.1| COG0295: Cytidine deaminase [Desulfovibrio desulfuricans G20]
          Length = 589

 Score = 33.5 bits (75), Expect = 4.0
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
 Frame = -1

Query: 790 CCCCVARFLNTVCARTHTHFDTHGSV----YPSAWHRV---------NSTYTAHRPQLRF 650
           CCC  A     +C  T   + T   +     P+   R          ++ ++  R  +R 
Sbjct: 45  CCCSTAASTPRICCFTSLAYATTPPLNQRELPATAVRTAPASPPVQDSAVHSVMRRSVRV 104

Query: 649 **GDNNFAISFRCYYVLPFPVSAPVTHPTPFAGPASCPFAHRFCTPTKGPWRLVCTIS 476
              D   A+SFRC   +P P +A V +   +AG   C   HR   P +  +R VC +S
Sbjct: 105 LPSDT--AMSFRCSENIPAPCNAAVAYGR-YAGNGCCSGCHR--RPGRVAYRAVCNVS 157

>emb|CAE03697.1| OSJNBb0026E15.15 [Oryza sativa (japonica cultivar-group)]
          Length = 281

 Score = 32.3 bits (72), Expect = 9.0
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -3

Query: 743 PHPFRYSRIRLSFGMAPRKFNLYSSPPSAPFLIGRQ*LCNLIPLLLRVAVPGLGTCYSS 567
           PH  R  R+    G+   + ++Y   P++  L+G +  CN  PL+  V  P + T +SS
Sbjct: 39  PHLRRLMRVLSVSGIFAVEEDVYKLTPASRILVGDKASCNFSPLVHLVVSPAMLTTFSS 97



EST assemble image


clone accession position
1 HC046d12_r AV635448 1 442
2 HC023h06_r AV633678 244 674
3 CM052a07_r AV390542 246 796
4 HC046e01_r AV635449 273 785




Chlamydomonas reinhardtii
Kazusa DNA Research Institute