KCC001461A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001461A_C01 KCC001461A_c01
tcctgctggtggCTGAGGCGCGCAGCTTCCGCTTCCTGGAGATCCTGGTGGGGGCGCTGA
CCGCCCTGATCTCGGCGTGCTTCATCTACGAGCTGGTGAAGGCGCAGCCCGACATGGGCA
AGGTGATGCGCGGCTACCTGCCGTCCAAGGAAATCATCACCAACAAGGACATGCTGTACC
TGGCCACAGGTATCCTCGGTGCCACGGTCATGCCGCACAACCTTTACCTGCACTCGTCCG
TCATCCAGACCCGCGCCTACCCCAGGACCACGGCCGGTCGCACCATAGCCATCAAGTTGG
GCCTGGTGGACTCGACCCTGTCGCTGCTCGTCGCCTTTGTCATCAACTCGTCCATCCTCA
TCGTGGCTGCCGCCGCCTTCCACTACGCCACACCGCCGCTGGAGGACATTGCTGACATCA
CTGACGCCTACGAGCTGCTTGCCTCGAGCCTAGGCTCCAAGGCCGCCTCCATCCTGTTTG
GTGTGGCGCTGCTTGCGGCGGGCCAGAACTCCACCATCACCGGCACGCTGTCGGGGCAGA
TTGTGATGGAGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001461A_C01 KCC001461A_c01
         (553 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM54030.1|AF515631_1 natural resistance associated macrophag...   345  2e-94
ref|NP_478248.1| manganese transport protein [Nostoc sp. PCC 712...   199  2e-50
ref|NP_470799.1| similar to manganese transport proteins NRAMP [...   198  5e-50
ref|NP_464949.1| similar to manganese transport proteins NRAMP [...   198  5e-50
ref|ZP_00109210.1| COG1914: Mn2+ and Fe2+ transporters of the NR...   196  2e-49

>gb|AAM54030.1|AF515631_1 natural resistance associated macrophage protein [Chlamydomonas
           reinhardtii]
          Length = 513

 Score =  345 bits (886), Expect = 2e-94
 Identities = 183/183 (100%), Positives = 183/183 (100%)
 Frame = +3

Query: 3   LLVAEARSFRFLEILVGALTALISACFIYELVKAQPDMGKVMRGYLPSKEIITNKDMLYL 182
           LLVAEARSFRFLEILVGALTALISACFIYELVKAQPDMGKVMRGYLPSKEIITNKDMLYL
Sbjct: 216 LLVAEARSFRFLEILVGALTALISACFIYELVKAQPDMGKVMRGYLPSKEIITNKDMLYL 275

Query: 183 ATGILGATVMPHNLYLHSSVIQTRAYPRTTAGRTIAIKLGLVDSTLSLLVAFVINSSILI 362
           ATGILGATVMPHNLYLHSSVIQTRAYPRTTAGRTIAIKLGLVDSTLSLLVAFVINSSILI
Sbjct: 276 ATGILGATVMPHNLYLHSSVIQTRAYPRTTAGRTIAIKLGLVDSTLSLLVAFVINSSILI 335

Query: 363 VAAAAFHYATPPLEDIADITDAYELLASSLGSKAASILFGVALLAAGQNSTITGTLSGQI 542
           VAAAAFHYATPPLEDIADITDAYELLASSLGSKAASILFGVALLAAGQNSTITGTLSGQI
Sbjct: 336 VAAAAFHYATPPLEDIADITDAYELLASSLGSKAASILFGVALLAAGQNSTITGTLSGQI 395

Query: 543 VME 551
           VME
Sbjct: 396 VME 398

>ref|NP_478248.1| manganese transport protein [Nostoc sp. PCC 7120]
           gi|20455059|sp|Q8ZSB0|MNTH_ANASP Probable manganese
           transport protein mntH gi|25315528|pir||AF2539 manganese
           transport protein all7601 [imported] - Nostoc sp.
           (strain PCC 7120) plasmid pCC7120beta
           gi|17134686|dbj|BAB77244.1| manganese transport protein
           [Nostoc sp. PCC 7120]
          Length = 442

 Score =  199 bits (506), Expect = 2e-50
 Identities = 102/183 (55%), Positives = 137/183 (74%)
 Frame = +3

Query: 3   LLVAEARSFRFLEILVGALTALISACFIYELVKAQPDMGKVMRGYLPSKEIITNKDMLYL 182
           LL  + + FR+ E LV  L A +  CF  E++ ++PDMG ++ GYLP KEI+ N +MLY+
Sbjct: 153 LLFLQHKGFRYTEALVIMLVATVGICFTAEILFSRPDMGGILLGYLPKKEILQNPEMLYI 212

Query: 183 ATGILGATVMPHNLYLHSSVIQTRAYPRTTAGRTIAIKLGLVDSTLSLLVAFVINSSILI 362
           A GILGATVMPHNLYLHSS++QTR +  TT  R  AIK G +DST +L +A  INS+ILI
Sbjct: 213 AIGILGATVMPHNLYLHSSIVQTRDWQPTTEKRWEAIKFGTIDSTFALSLALFINSAILI 272

Query: 363 VAAAAFHYATPPLEDIADITDAYELLASSLGSKAASILFGVALLAAGQNSTITGTLSGQI 542
           V+AA FH++    +++A+I DAY+LL+  LG  AAS +FG+ALLA+GQ+ST+T TL+GQI
Sbjct: 273 VSAATFHFSGN--QNVAEIQDAYKLLSPLLGVSAASAIFGIALLASGQSSTLTATLAGQI 330

Query: 543 VME 551
           VME
Sbjct: 331 VME 333

>ref|NP_470799.1| similar to manganese transport proteins NRAMP [Listeria innocua]
           gi|20455064|sp|Q92BT1|MNTH_LISIN Probable manganese
           transport protein mntH gi|25315516|pir||AF1615 manganese
           transport protein NRAMP homolog lin1463 [imported] -
           Listeria innocua (strain Clip11262)
           gi|16413936|emb|CAC96694.1| lin1463 [Listeria innocua]
          Length = 448

 Score =  198 bits (503), Expect = 5e-50
 Identities = 101/183 (55%), Positives = 134/183 (73%)
 Frame = +3

Query: 3   LLVAEARSFRFLEILVGALTALISACFIYELVKAQPDMGKVMRGYLPSKEIITNKDMLYL 182
           +L  + + FR++E++V  L   I  CF  E+V + PDM  + +G++P  EI+TN  MLY+
Sbjct: 165 VLFLQHKGFRYIEVIVITLMVTILVCFGAEMVMSHPDMQAIAKGFIPQSEIVTNPAMLYI 224

Query: 183 ATGILGATVMPHNLYLHSSVIQTRAYPRTTAGRTIAIKLGLVDSTLSLLVAFVINSSILI 362
           A GILGATVMPHNLYLHSS++QTR Y RT  G+  AI+   +DST SL +A +IN+SILI
Sbjct: 225 ALGILGATVMPHNLYLHSSIVQTRQYARTKEGKREAIRFSFIDSTFSLTIALLINASILI 284

Query: 363 VAAAAFHYATPPLEDIADITDAYELLASSLGSKAASILFGVALLAAGQNSTITGTLSGQI 542
           +AAAAF+  T    ++A I DAY+LL  +LGS  AS +F VALLA+GQNST+TGTL+GQI
Sbjct: 285 LAAAAFY--TTGQHNVAGIEDAYKLLNPTLGSSIASTVFAVALLASGQNSTLTGTLAGQI 342

Query: 543 VME 551
           VME
Sbjct: 343 VME 345

>ref|NP_464949.1| similar to manganese transport proteins NRAMP [Listeria
           monocytogenes EGD-e] gi|20455055|sp|Q8Y773|MNTH_LISMO
           Probable manganese transport protein mntH
           gi|25315518|pir||AH1252 manganese transport proteins
           NRAMP homolog lmo1424 [imported] - Listeria
           monocytogenes (strain EGD-e) gi|16410853|emb|CAC99502.1|
           lmo1424 [Listeria monocytogenes]
          Length = 448

 Score =  198 bits (503), Expect = 5e-50
 Identities = 101/183 (55%), Positives = 134/183 (73%)
 Frame = +3

Query: 3   LLVAEARSFRFLEILVGALTALISACFIYELVKAQPDMGKVMRGYLPSKEIITNKDMLYL 182
           +L  + + FR++E++V  L   I  CF  E+V + PDM  + +G++P  EI+TN  MLY+
Sbjct: 165 VLFLQHKGFRYIEVIVITLMVTILVCFGAEMVMSHPDMQAIAKGFIPQSEIVTNPAMLYI 224

Query: 183 ATGILGATVMPHNLYLHSSVIQTRAYPRTTAGRTIAIKLGLVDSTLSLLVAFVINSSILI 362
           A GILGATVMPHNLYLHSS++QTR Y RT  G+  AI+   +DST SL +A +IN+SILI
Sbjct: 225 ALGILGATVMPHNLYLHSSIVQTRQYARTKEGKKEAIRFSFIDSTFSLTIALLINASILI 284

Query: 363 VAAAAFHYATPPLEDIADITDAYELLASSLGSKAASILFGVALLAAGQNSTITGTLSGQI 542
           +AAAAF+  T    ++A I DAY+LL  +LGS  AS +F VALLA+GQNST+TGTL+GQI
Sbjct: 285 LAAAAFY--TTGQHNVAGIEDAYKLLNPTLGSSIASTVFAVALLASGQNSTLTGTLAGQI 342

Query: 543 VME 551
           VME
Sbjct: 343 VME 345

>ref|ZP_00109210.1| COG1914: Mn2+ and Fe2+ transporters of the NRAMP family [Nostoc
           punctiforme]
          Length = 435

 Score =  196 bits (498), Expect = 2e-49
 Identities = 100/183 (54%), Positives = 135/183 (73%)
 Frame = +3

Query: 3   LLVAEARSFRFLEILVGALTALISACFIYELVKAQPDMGKVMRGYLPSKEIITNKDMLYL 182
           LL  + + FR+ E LV  L   +  CF  E++ ++PDMG ++ GYLP KEI+ N +MLY+
Sbjct: 153 LLFLQHKGFRYTEALVIMLVGTVGICFTAEILFSRPDMGGILLGYLPKKEILQNPEMLYI 212

Query: 183 ATGILGATVMPHNLYLHSSVIQTRAYPRTTAGRTIAIKLGLVDSTLSLLVAFVINSSILI 362
           A GILGATVMPHNLYLHSS++QTR++   T  R  AIK G +DST +L +A  INS+ILI
Sbjct: 213 AIGILGATVMPHNLYLHSSIVQTRSWQPNTEKRWEAIKFGTIDSTFALSLALFINSAILI 272

Query: 363 VAAAAFHYATPPLEDIADITDAYELLASSLGSKAASILFGVALLAAGQNSTITGTLSGQI 542
           V+AA FH++    + +A+I DAY+LL+  LG  AAS +FG+ALLA+GQ+ST+T TL+GQI
Sbjct: 273 VSAATFHFSGN--QHVAEIQDAYKLLSPLLGVSAASAIFGIALLASGQSSTLTATLAGQI 330

Query: 543 VME 551
           VME
Sbjct: 331 VME 333



EST assemble image


clone accession position
1 CM051d09_r AV389837 1 468
2 MX242b12_r BP091649 13 553
3 LC094f10_r AV625564 174 527




Chlamydomonas reinhardtii
Kazusa DNA Research Institute