Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001452A_C02 KCC001452A_c02
(1228 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_812275.1| lipopolysaccharide core biosynthesis protein Lp... 68 3e-10
ref|NP_108491.1| lipopolysaccharide core biosynthesis protein lp... 67 5e-10
sp|P39907|LPSA_BACNO LPSA PROTEIN gi|458687|gb|AAC43386.1| LpsA 67 8e-10
ref|NP_796570.1| putative lipopolysaccharide A protein [Vibrio p... 65 2e-09
ref|NP_149642.1| 179R [Invertebrate iridescent virus 6] gi|74520... 63 1e-08
>ref|NP_812275.1| lipopolysaccharide core biosynthesis protein LpsA [Bacteroides
thetaiotaomicron VPI-5482] gi|29340678|gb|AAO78469.1|
lipopolysaccharide core biosynthesis protein LpsA
[Bacteroides thetaiotaomicron VPI-5482]
Length = 324
Score = 68.2 bits (165), Expect = 3e-10
Identities = 57/208 (27%), Positives = 90/208 (42%), Gaps = 5/208 (2%)
Frame = +3
Query: 465 PNEPAIATRRSLNPGNEFAVLWPWP---HHAFYARKGLLDNISFHVKSPEVVFRGALSGP 635
P+ P+I R L N +++ H F D +F K V+FRG + G
Sbjct: 116 PDYPSIVKSRPLTDDNVNSIVMKLDKVRHFIFVD-----DKKAFTEKKNMVIFRGKVKG- 169
Query: 636 LSHIPNAHNGLMKTSRLEVVQRWQHEPWANLGITFIPMHKRDDLVNTGFNVSV-VESLSI 812
K SR ++ + H P +LG D NT E +I
Sbjct: 170 ------------KPSRKLFMEMYFHHPMCDLG---------DVSKNTTDPAEWRTEKKTI 208
Query: 813 ASQLKYRYILCIEGADISSSFGWALASMSVPIHPYPYLHRVWFFNG-LRPYVHFLPILPD 989
L Y++I+ +EG D++S+ W ++S S+ + P P WF G L P H++ I PD
Sbjct: 209 NEHLDYKFIMALEGIDVASNLKWVMSSNSIAVMPRPTC-ETWFMEGTLIPNYHYIEIKPD 267
Query: 990 SSDLDRAISWCESHLDDCEKIALAGRAH 1073
SDL+ +++ H+D E + + AH
Sbjct: 268 FSDLEERLNYYIEHVD--ESLEIINHAH 293
>ref|NP_108491.1| lipopolysaccharide core biosynthesis protein lpsA [Mesorhizobium
loti] gi|14027683|dbj|BAB53952.1| lipopolysaccharide core
biosynthesis protein; LpsA [Mesorhizobium loti]
Length = 323
Score = 67.4 bits (163), Expect = 5e-10
Identities = 62/227 (27%), Positives = 96/227 (41%), Gaps = 7/227 (3%)
Frame = +3
Query: 426 RHIFPILLVD-EVG-----PNEPAIATRRSLNPGNEFAVLWPWPHHAFYARKGLLDNISF 587
R+ P LL+D E G P P I R + ++ AV+ + D I F
Sbjct: 88 RYFDPGLLIDVEFGDVRDVPKVPTIVKDRPIRDDDQNAVIMKLDKFRHFQMPA--DTIPF 145
Query: 588 HVKSPEVVFRGALSGPLSHIPNAHNGLMKTSRLEVVQRWQHEPWANLGITFIPMHKRDDL 767
K P VV+RG L+ P+ R +Q + P+ + G HK +
Sbjct: 146 ANKLPLVVWRGDLNNPI--------------RTRFLQAVRDLPFCDAG-----SHKPNAP 186
Query: 768 VNTGFNVSVVESLSIASQLKYRYILCIEGADISSSFGWALASMSVPIHPYPYLHRVWFF- 944
LSI+ +YRYI+ +EG D++++ W L S S+ + P P + WF
Sbjct: 187 AEYA-----KPFLSISQHQRYRYIVSLEGNDVATNLKWILNSKSLCLMP-PPTYETWFAE 240
Query: 945 NGLRPYVHFLPILPDSSDLDRAISWCESHLDDCEKIALAGRAHMETF 1085
L VH++P+ PD +DL + + E H E+I A+ F
Sbjct: 241 QQLEANVHYVPLDPDFADLGEKVRYFERHPAQAERIIAGANAYCRKF 287
>sp|P39907|LPSA_BACNO LPSA PROTEIN gi|458687|gb|AAC43386.1| LpsA
Length = 318
Score = 66.6 bits (161), Expect = 8e-10
Identities = 57/220 (25%), Positives = 93/220 (41%), Gaps = 9/220 (4%)
Frame = +3
Query: 465 PNEPAIATRRSLNPGNEFAVLWPWP---HHAFYARKGLLDNISFHVKSPEVVFRGALSGP 635
P P R + NE AVL H Y D + F K ++V+RGA
Sbjct: 113 PELPQFVKSRPITKNNENAVLLKLDSVRHFYLYP-----DRLPFRAKKSQLVWRGA---- 163
Query: 636 LSHIPNAHNGLMKTSRLEVVQRWQHEPWANLGITFI-----PMHKRDDLVNTGFNVSVVE 800
AH + R+ ++ + P ++G P H+ E
Sbjct: 164 ------AH----QNHRIRFLEHFHQHPLCDVGCIHARSAAKPYHR--------------E 199
Query: 801 SLSIASQLKYRYILCIEGADISSSFGWALASMSVPIHPYPYLHRVWFFNG-LRPYVHFLP 977
+S+ QL+YRYIL +EG D++++ W +AS S+ + P P + W G L+ VH++
Sbjct: 200 FMSVKRQLQYRYILSLEGNDVATNLKWIMASNSLCLMPAP-RYETWMMEGRLQAGVHYVQ 258
Query: 978 ILPDSSDLDRAISWCESHLDDCEKIALAGRAHMETFLRAD 1097
+ D +DL+ I + E + + E I + M F R +
Sbjct: 259 LRDDFADLEEQILFFERYPEAAEAIIKNAQQWMSQFARPE 298
>ref|NP_796570.1| putative lipopolysaccharide A protein [Vibrio parahaemolyticus RIMD
2210633] gi|28805173|dbj|BAC58454.1| putative
lipopolysaccharide A protein [Vibrio parahaemolyticus]
Length = 311
Score = 65.1 bits (157), Expect = 2e-09
Identities = 54/204 (26%), Positives = 94/204 (45%), Gaps = 1/204 (0%)
Frame = +3
Query: 465 PNEPAIATRRSLNPGNEFAVLWPWPHHAFYARKGLLDNISFHVKSPEVVFRGALSGPLSH 644
PN P+ R ++ N+ +V+ + K + D +S+H K V +RG P
Sbjct: 107 PNVPSFIKSRPIHGDNQNSVVLKLNQIRHF--KFVDDEMSYHDKKDMVAWRGVGFQP--- 161
Query: 645 IPNAHNGLMKTSRLEVVQRWQHEPWANLGITFIPMHKRDDLVNTGFNVSVVESLSIASQL 824
R +V+Q + P N+G T + GF +SI QL
Sbjct: 162 -----------HRCKVIQAFYDHPRCNIGQT---RPQEGQPWEKGF-------MSIEEQL 200
Query: 825 KYRYILCIEGADISSSFGWALASMSVPIHPYPYLHRVWFFNG-LRPYVHFLPILPDSSDL 1001
+Y+++LCIEG D++++ WA++S S+ I P + WF G L +H++ + D SDL
Sbjct: 201 QYKFLLCIEGNDVATNLKWAMSSNSLVIMSKP-KYETWFMEGKLEAGIHYVEVQDDYSDL 259
Query: 1002 DRAISWCESHLDDCEKIALAGRAH 1073
+ + + ++ E +A+ AH
Sbjct: 260 PEKMDYYLA--NEQEALAIIENAH 281
>ref|NP_149642.1| 179R [Invertebrate iridescent virus 6] gi|7452087|pir||T03180
tyrosine protein kinase homolog - Chilo iridescent virus
gi|2738451|gb|AAB94478.1| 179R [Chilo iridescent virus]
Length = 1186
Score = 62.8 bits (151), Expect = 1e-08
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Frame = +3
Query: 795 VESLSIASQLKYRYILCIEG------ADISSSFGWALASMSVPIHPYPYLHRVWFFNGLR 956
V L+ Q KY+YI+ I+G + S G + + I + ++WF + L+
Sbjct: 402 VSPLTPEEQSKYKYIINIDGHVSAFRLSLEMSMGCCILLVKSKIPNETFGWKMWFSHLLK 461
Query: 957 PYVHFLPILPDSSDLDRAISWCESHLDDCEKIALAGRAHMETFLRADFISAVKSNVMKMW 1136
PY+H++P+ D SDL I WC + + C++I+ +T+L + I N+M
Sbjct: 462 PYIHYVPVKSDLSDLIEKIQWCRDNDEKCKEISQEALKFYQTYLSRESILDYMQNLMVKL 521
Query: 1137 DLTQP 1151
L+ P
Sbjct: 522 KLSFP 526
