KCC001447A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001447A_C02 KCC001447A_c02
TATCAATACAACAACAAACCTTCACTTGATTAGTGCTCGCTGCAGCTTCCAGAAACCTAG
TCTTCCCCAGTTCCGTCTTCGCACACCCGCCAAAATGAACATGAACTCTCAAGACTGGGA
CACCGTTGTGCTTCGCAAGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGT
CAATGCGGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATTTAACGCTGGAAA
GAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGA
GACTGGAGGACTTCCATCACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGG
CGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGGCTATCAACGAGAAGCCGC
AGGTGATCCAGGAGTACGAGCAGGGCAAGGCCATCCCCAACCCCCAGGTGCTCTCGAAGC
TGTCCCGTGCGCTCGGCGTGGTGCTGAAGAAGTAAGGAGACAGGCGCTGCTTGGCTTTTG
TTTGCGGAGGAGCTATAGGGTGACGCAGGGCCAGGGCCAGGACCCCGCCCCGTGTGTCAG
CGGCAGCACACGCGGACCGATTAGTGCTGCGGCGCAGCGGTCTTGCCCACGGCGGGGCGG
CGTGTGACCGGGCGGGTCGTGAGTGCGGAAGTGCGAGTGCGGAGTCAGCTGGCGCTCAGC
TGGAGCGCCGGGGTCGGTAATT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001447A_C02 KCC001447A_c02
         (742 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T10078 hypothetical protein - castor bean gi|1632831|emb|CA...    92  3e-33
gb|AAF81108.1|AF232062_1 multiprotein bridging factor 1 [Solanum...    92  3e-33
dbj|BAB88859.1| putative multiprotein bridging factor 1 [Nicotia...    92  5e-32
ref|NP_565981.1| expressed protein [Arabidopsis thaliana] gi|253...    96  6e-32
ref|NP_191427.1| transcriptional coactivator - like protein [Ara...    91  1e-31

>pir||T10078 hypothetical protein - castor bean gi|1632831|emb|CAA89698.1| orf
           [Ricinus communis]
          Length = 142

 Score = 92.4 bits (228), Expect(2) = 3e-33
 Identities = 45/68 (66%), Positives = 54/68 (79%)
 Frame = +3

Query: 306 EDFHHERVSSNLKQQIVQARTAKKMTQAQLAQAINEKPQVIQEYEQGKAIPNPQVLSKLS 485
           E+  H+RV + LK+ I+QAR  KK TQAQLAQ INEKPQ+IQEYE GKAIPN Q++ KL 
Sbjct: 72  ENLTHDRVPTELKKAIMQARMEKKFTQAQLAQMINEKPQIIQEYESGKAIPNQQIIGKLE 131

Query: 486 RALGVVLK 509
           RALGV L+
Sbjct: 132 RALGVKLR 139

 Score = 72.4 bits (176), Expect(2) = 3e-33
 Identities = 39/69 (56%), Positives = 47/69 (67%)
 Frame = +2

Query: 107 SQDWDTVVLRKKQPTGAALKDEAAVNAARRQGAAVETSQKFNAGKNKPGAAQTVSGKPAA 286
           SQDW+ VV+RKK PT AA KDE  VNAARR GA +ET +K NAG NK  AA + +     
Sbjct: 8   SQDWEPVVIRKKAPTAAAKKDEKVVNAARRAGAEIETLKKSNAGTNK--AASSSTSLNTR 65

Query: 287 KLEQETGGL 313
           KL++ET  L
Sbjct: 66  KLDEETENL 74

>gb|AAF81108.1|AF232062_1 multiprotein bridging factor 1 [Solanum tuberosum]
          Length = 139

 Score = 92.0 bits (227), Expect(2) = 3e-33
 Identities = 44/68 (64%), Positives = 55/68 (80%)
 Frame = +3

Query: 306 EDFHHERVSSNLKQQIVQARTAKKMTQAQLAQAINEKPQVIQEYEQGKAIPNPQVLSKLS 485
           E+  HE+V + LK+ I+QAR  KK+TQ+QLAQ INEKPQ+IQEYE GKAIPN Q++SKL 
Sbjct: 69  ENLSHEKVPTELKKAIMQARQDKKLTQSQLAQLINEKPQIIQEYESGKAIPNQQIISKLE 128

Query: 486 RALGVVLK 509
           RALG  L+
Sbjct: 129 RALGAKLR 136

 Score = 72.4 bits (176), Expect(2) = 3e-33
 Identities = 38/69 (55%), Positives = 48/69 (69%)
 Frame = +2

Query: 107 SQDWDTVVLRKKQPTGAALKDEAAVNAARRQGAAVETSQKFNAGKNKPGAAQTVSGKPAA 286
           SQDW+ VV+RKK PT AA KDE AVNAARR GA +ET +K NAG N+  AA + +     
Sbjct: 5   SQDWEPVVIRKKAPTSAARKDEKAVNAARRSGAEIETVKKSNAGSNR--AASSSTSLNTR 62

Query: 287 KLEQETGGL 313
           KL+++T  L
Sbjct: 63  KLDEDTENL 71

>dbj|BAB88859.1| putative multiprotein bridging factor 1 [Nicotiana tabacum]
          Length = 140

 Score = 91.7 bits (226), Expect(2) = 5e-32
 Identities = 44/68 (64%), Positives = 55/68 (80%)
 Frame = +3

Query: 306 EDFHHERVSSNLKQQIVQARTAKKMTQAQLAQAINEKPQVIQEYEQGKAIPNPQVLSKLS 485
           E+  H++V + LK+ I+QAR  KK+TQAQLAQ INEKPQ+IQEYE GKAIPN Q++SKL 
Sbjct: 70  ENLAHQKVPTELKKAIMQARQDKKLTQAQLAQLINEKPQIIQEYESGKAIPNQQIISKLE 129

Query: 486 RALGVVLK 509
           RALG  L+
Sbjct: 130 RALGAKLR 137

 Score = 68.9 bits (167), Expect(2) = 5e-32
 Identities = 36/69 (52%), Positives = 46/69 (66%)
 Frame = +2

Query: 107 SQDWDTVVLRKKQPTGAALKDEAAVNAARRQGAAVETSQKFNAGKNKPGAAQTVSGKPAA 286
           +QDW+ VV+RKK PT AA KDE AVNAARR GA +ET +K  AG NK  ++ T       
Sbjct: 6   AQDWEPVVIRKKAPTAAARKDEKAVNAARRSGAEIETIRKSAAGTNKAASSSTTLN--TR 63

Query: 287 KLEQETGGL 313
           KL+++T  L
Sbjct: 64  KLDEDTENL 72

>ref|NP_565981.1| expressed protein [Arabidopsis thaliana] gi|25349671|pir||H84856
           hypothetical protein At2g42680 [imported] - Arabidopsis
           thaliana gi|4512684|gb|AAD21738.1| expressed protein
           [Arabidopsis thaliana]
           gi|13878035|gb|AAK44095.1|AF370280_1 unknown protein
           [Arabidopsis thaliana] gi|17104599|gb|AAL34188.1|
           unknown protein [Arabidopsis thaliana]
           gi|20198082|gb|AAM15391.1| expressed protein
           [Arabidopsis thaliana] gi|21593718|gb|AAM65685.1|
           transcriptional coactivator-like protein [Arabidopsis
           thaliana]
          Length = 142

 Score = 96.3 bits (238), Expect(2) = 6e-32
 Identities = 48/68 (70%), Positives = 56/68 (81%)
 Frame = +3

Query: 306 EDFHHERVSSNLKQQIVQARTAKKMTQAQLAQAINEKPQVIQEYEQGKAIPNPQVLSKLS 485
           E+  HERV + LK+ I+QART KK+TQ+QLAQ INEKPQVIQEYE GKAIPN Q+LSKL 
Sbjct: 72  ENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQQILSKLE 131

Query: 486 RALGVVLK 509
           RALG  L+
Sbjct: 132 RALGAKLR 139

 Score = 63.9 bits (154), Expect(2) = 6e-32
 Identities = 30/53 (56%), Positives = 38/53 (71%)
 Frame = +2

Query: 107 SQDWDTVVLRKKQPTGAALKDEAAVNAARRQGAAVETSQKFNAGKNKPGAAQT 265
           +QDW+ VV+RKK    AA +DE  VNAARR GA +ET +KFNAG NK  ++ T
Sbjct: 8   TQDWEPVVIRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGT 60

>ref|NP_191427.1| transcriptional coactivator - like protein [Arabidopsis thaliana]
           gi|11281987|pir||T49151 transcription coactivator-like
           protein - Arabidopsis thaliana
           gi|7630063|emb|CAB88285.1| transcriptional
           coactivator-like protein [Arabidopsis thaliana]
           gi|11692930|gb|AAG40068.1|AF324717_1 AT3g58680
           [Arabidopsis thaliana]
           gi|11908124|gb|AAG41491.1|AF326909_1 putative
           transcriptional coactivator protein [Arabidopsis
           thaliana] gi|12642936|gb|AAK00410.1|AF339728_1 putative
           transcriptional coactivator protein [Arabidopsis
           thaliana] gi|14596125|gb|AAK68790.1| transcriptional
           coactivator-like protein [Arabidopsis thaliana]
           gi|20148317|gb|AAM10049.1| transcriptional
           coactivator-like protein [Arabidopsis thaliana]
           gi|21536830|gb|AAM61162.1| transcriptional
           coactivator-like protein [Arabidopsis thaliana]
          Length = 142

 Score = 91.3 bits (225), Expect(2) = 1e-31
 Identities = 45/68 (66%), Positives = 54/68 (79%)
 Frame = +3

Query: 306 EDFHHERVSSNLKQQIVQARTAKKMTQAQLAQAINEKPQVIQEYEQGKAIPNPQVLSKLS 485
           E+  H+RV + LK+ I+QAR  KK+TQ+QLA  INEKPQVIQEYE GKAIPN Q+LSKL 
Sbjct: 72  ENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKAIPNQQILSKLE 131

Query: 486 RALGVVLK 509
           RALG  L+
Sbjct: 132 RALGAKLR 139

 Score = 68.2 bits (165), Expect(2) = 1e-31
 Identities = 35/69 (50%), Positives = 46/69 (65%)
 Frame = +2

Query: 107 SQDWDTVVLRKKQPTGAALKDEAAVNAARRQGAAVETSQKFNAGKNKPGAAQTVSGKPAA 286
           +QDW+ VV+RK+ P  AA +DE  VNAARR GA +ET +KFNAG NK  AA + +     
Sbjct: 8   TQDWEPVVIRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNK--AASSGTSLNTK 65

Query: 287 KLEQETGGL 313
           KL+ +T  L
Sbjct: 66  KLDDDTENL 74



EST assemble image


clone accession position
1 HC043e03_r AV635218 1 550
2 LC084c04_r AV624896 8 635
3 MX213h08_r BP089789 13 546
4 MX002f03_r BP086139 13 512
5 MX029f01_r BP087266 92 457
6 CM050b05_r AV389789 94 440
7 LC045d01_r AV622265 94 454
8 LC052e09_r AV622655 94 584
9 CM084b02_r AV392644 95 495
10 LC010h11_r AV619625 95 549
11 CM050c05_r AV389790 110 333
12 LCL047d01_r AV628804 110 554
13 MX014f08_r BP086699 113 538
14 MX225g03_r BP090566 113 420
15 LC003e10_r AV619085 115 635
16 LCL084b07_r AV630777 116 525
17 HC056a12_r AV636172 116 541
18 MX224c04_r BP090462 116 419
19 MX251h11_r BP092277 117 610
20 MX028c08_r BP087218 118 574
21 MX012h06_r BP086616 121 540
22 MX229g06_r BP090833 121 516
23 MX021h01_r BP086975 125 586
24 MX248a11_r BP091994 127 613
25 MX236d04_r BP091282 137 536
26 LC006d09_r AV619308 176 744
27 MX036c12_r BP087520 289 630
28 MXL076b01_r BP097461 345 779
29 CM093c01_r AV392955 364 849




Chlamydomonas reinhardtii
Kazusa DNA Research Institute