KCC001439A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001439A_C01 KCC001439A_c01
CGCGCACCTGTTCTAGACTCACTGAGCACATCAGAAGCTTAGCGGCTGTATTATAGACTA
GACAAACCTCGCAGAACACTTCGTTCGCGCACTTCAACAATGTCTGGCTCCACCACCAAG
GTTCCGTTTACGGAGCCGGAATGGAAGATTCCAGGGTACACCGGTTATGTCCAGGGTTTA
CAGGAGACCTACAAAAAGACTCCTGTGATGGCGCAGCTGGAGACAAAGGATCCCTCGCCG
GAGTCGTTCATCTACACACGCACGCAGACAGCCCCCAAGCCCTCCCCCGTGCGGGATCCC
TGCAACAACCCGGAGAACTTCAAGAAGCCTCAGCCAGGGAACCTGTGGCCAGCGCTCCAA
GAGACGGCCATCCAGGCGTCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001439A_C01 KCC001439A_c01
         (381 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_776544.1| neutrophil cytosolic factor 1 (47kDa, chronic g...    40  0.006
gb|AAL11888.1|AF411138_1 NADPH oxidase cytosolic protein p47phox...    38  0.040
ref|NP_725339.1| short stop CG18076-PH [Drosophila melanogaster]...    35  0.20
dbj|BAB14457.1| unnamed protein product [Homo sapiens]                 35  0.26
gb|AAB66702.1| protease 1 [Pneumocystis carinii f. sp. carinii]        35  0.26

>ref|NP_776544.1| neutrophil cytosolic factor 1 (47kDa, chronic granulomatous
           disease, autosomal 1) [Bos taurus]
           gi|6685673|sp|O77774|NCF1_BOVIN Neutrophil cytosol
           factor 1 (NCF-1) (Neutrophil NADPH oxidase factor 1) (47
           kDa neutrophil oxidase factor) (p47-phox) (NCF-47K)
           gi|3687889|gb|AAC82462.1| NADPH oxidase p47-phox [Bos
           taurus]
          Length = 392

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
 Frame = +2

Query: 107 APPPRFRLRSRNGRFQGTP--VMSRVYRRPTKRLL*WRSWRQRIPRRSRSSTHARRQPPS 280
           APP R  +R+ +   Q +   +    YRR + R +  R  ++  P+RSRS+   ++QP +
Sbjct: 299 APPRRSSIRNAHSIHQRSRKRLSQDTYRRNSVRFMQQRRHQRPEPQRSRSALREQQQPKT 358

Query: 281 PPPCGIPATTRRTSRSLSQGTCGQRSKRR 367
             P   PA   R S  L    C + +KR+
Sbjct: 359 ERPKPQPAVPPRPSADLILHRCSESTKRK 387

>gb|AAL11888.1|AF411138_1 NADPH oxidase cytosolic protein p47phox [Bison bison]
          Length = 392

 Score = 37.7 bits (86), Expect = 0.040
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
 Frame = +2

Query: 107 APPPRFRLRSRNGRFQGTP--VMSRVYRRPTKRLL*WRSWRQRIPRRSRSSTHARRQPPS 280
           APP R  +R+ +   Q +   +    YRR + R +  R  ++  P+ SRS+   ++QP +
Sbjct: 299 APPRRSSIRNAHSIHQRSRKRLSQDTYRRNSVRFMQQRRHQRPEPQSSRSALKEQQQPKT 358

Query: 281 PPPCGIPATTRRTSRSLSQGTCGQRSKRR 367
             P   PA   R S  L    C + +KR+
Sbjct: 359 ERPKPQPAVPPRPSADLILHRCSESTKRK 387

>ref|NP_725339.1| short stop CG18076-PH [Drosophila melanogaster]
            gi|21627205|gb|AAF58320.2| CG18076-PH [Drosophila
            melanogaster]
          Length = 8805

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 34/107 (31%), Positives = 50/107 (45%), Gaps = 7/107 (6%)
 Frame = +1

Query: 82   RSRTSTMSGSTTKVPFTEPEWKIPGYTGYVQGLQETYKKTPVMAQLETKDPSPESFIYTR 261
            ++  S ++ + T V   E +  +P         +E+ KK PV+    TKD S        
Sbjct: 3056 KTEVSKITETITTVTSNETD-TVPEKISQKSASEESAKKDPVV----TKDTSSRP---AE 3107

Query: 262  TQTAPKP---SPVRDPCNN---PENFKK-PQPGNLWPALQETAIQAS 381
            T+T+PKP    P  DP  N   PE+ KK P P    P  +ETA +A+
Sbjct: 3108 TETSPKPVQKEPTPDPAQNTEFPESIKKDPTPE---PDYKETATEAA 3151

>dbj|BAB14457.1| unnamed protein product [Homo sapiens]
          Length = 766

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 31/105 (29%), Positives = 41/105 (38%), Gaps = 18/105 (17%)
 Frame = +3

Query: 117 QGSVYGAGMED--SRVHRLCP--GFTGDLQKDSCDGAAGDKGSLAGVVHLH--------- 257
           +GS YGA  ED  SR+ RL    G T  +Q++     A   G    ++  H         
Sbjct: 604 EGSEYGASGEDALSRIQRLMAEGGMTAVVQREQSTTMASMGGFGNNIIVSHRIHRSSQTG 663

Query: 258 -----THADSPQALPRAGSLQQPGELQEASAREPVASAPRDGHPG 377
                 H  SPQ     G L + G+L E       AS  + G PG
Sbjct: 664 TEPGAAHTSSPQPSTSRGLLPEAGQLAERGLSPRTASWDQPGTPG 708

>gb|AAB66702.1| protease 1 [Pneumocystis carinii f. sp. carinii]
          Length = 926

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 18/51 (35%), Positives = 25/51 (48%)
 Frame = +1

Query: 184 ETYKKTPVMAQLETKDPSPESFIYTRTQTAPKPSPVRDPCNNPENFKKPQP 336
           ET  +T    Q ET+ P P     + TQ  P+P P  +P   PE   +P+P
Sbjct: 763 ETQPETQPETQPETQPPQPPQPPQSETQPEPEPEPEPEPEPEPEPEPQPEP 813



EST assemble image


clone accession position
1 MX230h11_r BP090916 1 416
2 MXL070e02_r BP097122 92 492
3 CM049c12_r AV389612 94 378




Chlamydomonas reinhardtii
Kazusa DNA Research Institute