KCC001437A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001437A_C01 KCC001437A_c01
tgctgtccgccCCCGCCACCGCCTACAGCCACGACCCCAAGAAGTCCATGCTGGAGCCGC
CCTCGCTCATGGCGGGAGCCGCGGCCTCGCTCATTACCGCCGTGCAGGCCCGTAACAACG
CGCGCATGGTGGTGTCGGGCTCTGTTGAGATGTTCTCCAACAGCTTCCTGGCGGCCACCG
TGACCGCGGGCGGCAAGAGCACCGCCACCGCCAACAAGGACTTTGTCAACACCCTGACGC
GCTGGACCTTCCAGGACCGCGGCGTGCTGGTGGCGTCCAACATGCGCCACCACCTGCTGG
GTAGCGAGGACCAGCCCTGGGGCTACCGCGTCAACGACGACGTGGAATTCCTCGTTGATG
TGATGGAGGTGGAGGGCGGCGAGTCCAAGCCCTACAAGGCCGACGACGTGCAGGTGGAGT
TCATCATGCTCAACCCCTACGTCCGCCAGCCGCTGGCGCACGACGGCGCCGGTACCTTCT
CGCTGCGATTnCAGGTGCCCGACGTGTACGGCGTGTTCAAGTACGTCGTCGACTACTCGC
ACCGCGGGTACTCCTACATC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001437A_C01 KCC001437A_c01
         (560 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC82967.1| putative dolichyl-di-phosphooligosaccharide-prot...   174  7e-43
ref|NP_569038.1| dolichyl-di-phosphooligosaccharide-protein glyc...   164  8e-40
gb|AAM63023.1| dolichyl-di-phosphooligosaccharide-protein glycot...   164  1e-39
gb|AAK59450.1| putative dolichyl-di-phosphooligosaccharide-prote...   161  5e-39
dbj|BAA97274.1| dolichyl-di-phosphooligosaccharide-protein glyco...   158  5e-38

>dbj|BAC82967.1| putative dolichyl-di-phosphooligosaccharide-prot ein [Oryza sativa
           (japonica cultivar-group)]
          Length = 440

 Score =  174 bits (441), Expect = 7e-43
 Identities = 86/187 (45%), Positives = 126/187 (66%), Gaps = 3/187 (1%)
 Frame = +3

Query: 3   LSAPATAYSHDPKKSMLEPPSLMAGAAASLITAVQARNNARMVVSGSVEMFSNSFLAATV 182
           LSA  +AYS +PK  +  PPSL  G+A SL++ +QARNNAR+++SGS+++FSN FL + V
Sbjct: 205 LSASPSAYSANPKSKLASPPSL-TGSAISLVSVMQARNNARVLISGSLDLFSNRFLKSGV 263

Query: 183 TAGG---KSTATANKDFVNTLTRWTFQDRGVLVASNMRHHLLGSEDQPWGYRVNDDVEFL 353
              G   +     N+ FV   ++W F +RG L A N++H+ +G  ++P  YR+NDD+E+ 
Sbjct: 264 QKAGSKIRHEKAGNEQFVTETSKWVFHERGHLKAVNVKHNKVGETNEPGMYRINDDLEYS 323

Query: 354 VDVMEVEGGESKPYKADDVQVEFIMLNPYVRQPLAHDGAGTFSLRXQVPDVYGVFKYVVD 533
           V++ E  G   KPY ADDVQV+F M++PYV + L+ D  G FS   +VPDVYGVF++ V+
Sbjct: 324 VEIYEWSGTSWKPYVADDVQVQFYMMSPYVLKTLSTDKKGVFSTSFKVPDVYGVFQFKVE 383

Query: 534 YSHRGYS 554
           Y   GY+
Sbjct: 384 YQRLGYT 390

>ref|NP_569038.1| dolichyl-di-phosphooligosaccharide-protein glycotransferase
           (oligosaccharyltransferase)-related [Arabidopsis
           thaliana] gi|16226812|gb|AAL16268.1|AF428338_1
           AT5g66680/MSN2_7 [Arabidopsis thaliana]
           gi|23297258|gb|AAN12926.1| putative
           dolichyl-di-phosphooligosaccharide glycotransferase
           (oligosaccharyltransferase) [Arabidopsis thaliana]
          Length = 437

 Score =  164 bits (415), Expect = 8e-40
 Identities = 82/187 (43%), Positives = 121/187 (63%), Gaps = 3/187 (1%)
 Frame = +3

Query: 3   LSAPATAYSHDPKKSMLEPPSLMAGAAASLITAVQARNNARMVVSGSVEMFSNSFLAATV 182
           LSA  +AYS +P   +  PP L  G++ SL++ +QARNNAR+V+SGSV++FS+  + + V
Sbjct: 202 LSASPSAYSANPSSKLSSPPQL-TGSSISLVSVMQARNNARVVISGSVQLFSDRLIRSGV 260

Query: 183 TAGGKSTA---TANKDFVNTLTRWTFQDRGVLVASNMRHHLLGSEDQPWGYRVNDDVEFL 353
              G       + N+ FV  L++W F +RG L A N+ HH +G  D+P  YR+ DD+EF 
Sbjct: 261 QKAGSPNQYEKSGNEQFVTELSKWVFHERGHLKAGNLVHHRVGETDEPAIYRIKDDLEFS 320

Query: 354 VDVMEVEGGESKPYKADDVQVEFIMLNPYVRQPLAHDGAGTFSLRXQVPDVYGVFKYVVD 533
           V++ E  G   +PY A+DVQV+F M++PYV + L+ D  G F    +VPDVYGVF++ V+
Sbjct: 321 VEIYEWSGKSWEPYVANDVQVQFYMMSPYVLKTLSTDKKGLFHTSFKVPDVYGVFQFKVE 380

Query: 534 YSHRGYS 554
           Y   GY+
Sbjct: 381 YEKLGYT 387

>gb|AAM63023.1| dolichyl-di-phosphooligosaccharide-protein glycotransferase
           (oligosaccharyltransferase)-like [Arabidopsis thaliana]
          Length = 437

 Score =  164 bits (414), Expect = 1e-39
 Identities = 82/187 (43%), Positives = 122/187 (64%), Gaps = 3/187 (1%)
 Frame = +3

Query: 3   LSAPATAYSHDPKKSMLEPPSLMAGAAASLITAVQARNNARMVVSGSVEMFSNSFLAATV 182
           LSA  +AYS +P   +  PP L  G++ SL++ +QARNNAR+V+SGSV++FS+  + + V
Sbjct: 202 LSASPSAYSANPSSKLSSPPQL-TGSSISLVSVMQARNNARVVISGSVQLFSDRLIRSGV 260

Query: 183 TAGG---KSTATANKDFVNTLTRWTFQDRGVLVASNMRHHLLGSEDQPWGYRVNDDVEFL 353
              G   +   + N+ FV  L++W F +RG L A N+ HH +G  D+P  YR+ DD+EF 
Sbjct: 261 QKAGIPNQYEKSGNEQFVTELSKWVFHERGHLKAGNLVHHRVGETDEPAIYRIKDDLEFS 320

Query: 354 VDVMEVEGGESKPYKADDVQVEFIMLNPYVRQPLAHDGAGTFSLRXQVPDVYGVFKYVVD 533
           V++ E  G   +PY A+DVQV+F M++PYV + L+ D  G F    +VPDVYGVF++ V+
Sbjct: 321 VEIYEWSGKSWEPYVANDVQVQFYMMSPYVLKTLSTDKKGLFHTSFKVPDVYGVFQFKVE 380

Query: 534 YSHRGYS 554
           Y   GY+
Sbjct: 381 YEKLGYT 387

>gb|AAK59450.1| putative dolichyl-di-phosphooligosaccharide-protein
           glycotransferase [Arabidopsis thaliana]
          Length = 437

 Score =  161 bits (408), Expect = 5e-39
 Identities = 81/187 (43%), Positives = 120/187 (63%), Gaps = 3/187 (1%)
 Frame = +3

Query: 3   LSAPATAYSHDPKKSMLEPPSLMAGAAASLITAVQARNNARMVVSGSVEMFSNSFLAATV 182
           LSA  +AYS +P   +  PP L  G++ SL++ +QARNNAR+V+SGSV++FS+  + + V
Sbjct: 202 LSASPSAYSANPSSKLSSPPQL-TGSSISLVSVMQARNNARVVISGSVQLFSDRLIRSGV 260

Query: 183 TAGGKSTA---TANKDFVNTLTRWTFQDRGVLVASNMRHHLLGSEDQPWGYRVNDDVEFL 353
              G       + N+ FV  L++W F +RG L A N+ HH +G  D+P  YR+ DD+EF 
Sbjct: 261 QKAGSPNQYEKSGNEQFVTELSKWVFHERGHLKAGNLVHHRVGETDEPAIYRIKDDLEFS 320

Query: 354 VDVMEVEGGESKPYKADDVQVEFIMLNPYVRQPLAHDGAGTFSLRXQVPDVYGVFKYVVD 533
           V++ E  G   +PY A+ VQV+F M++PYV + L+ D  G F    +VPDVYGVF++ V+
Sbjct: 321 VEIYEWSGKSWEPYVANGVQVQFYMMSPYVLKTLSTDKKGLFHTSFKVPDVYGVFQFKVE 380

Query: 534 YSHRGYS 554
           Y   GY+
Sbjct: 381 YEKLGYT 387

>dbj|BAA97274.1| dolichyl-di-phosphooligosaccharide-protein glycotransferase
           (oligosaccharyltransferase)-like [Arabidopsis thaliana]
          Length = 442

 Score =  158 bits (399), Expect = 5e-38
 Identities = 82/192 (42%), Positives = 121/192 (62%), Gaps = 8/192 (4%)
 Frame = +3

Query: 3   LSAPATAYSHDPKKSMLEPPSLMAGAAASLITAVQ-----ARNNARMVVSGSVEMFSNSF 167
           LSA  +AYS +P   +  PP L  G++ SL++ +Q     ARNNAR+V+SGSV++FS+  
Sbjct: 202 LSASPSAYSANPSSKLSSPPQL-TGSSISLVSVMQVCLSSARNNARVVISGSVQLFSDRL 260

Query: 168 LAATVTAGGKSTA---TANKDFVNTLTRWTFQDRGVLVASNMRHHLLGSEDQPWGYRVND 338
           + + V   G       + N+ FV  L++W F +RG L A N+ HH +G  D+P  YR+ D
Sbjct: 261 IRSGVQKAGSPNQYEKSGNEQFVTELSKWVFHERGHLKAGNLVHHRVGETDEPAIYRIKD 320

Query: 339 DVEFLVDVMEVEGGESKPYKADDVQVEFIMLNPYVRQPLAHDGAGTFSLRXQVPDVYGVF 518
           D+EF V++ E  G   +PY A+DVQV+F M++PYV + L+ D  G F    +VPDVYGVF
Sbjct: 321 DLEFSVEIYEWSGKSWEPYVANDVQVQFYMMSPYVLKTLSTDKKGLFHTSFKVPDVYGVF 380

Query: 519 KYVVDYSHRGYS 554
           ++ V+Y   GY+
Sbjct: 381 QFKVEYEKLGYT 392



EST assemble image


clone accession position
1 LC087d04_r AV625064 1 474
2 CM068e06_r AV391094 5 560
3 CM049a11_r AV389632 43 409




Chlamydomonas reinhardtii
Kazusa DNA Research Institute