KCC001430A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001430A_C01 KCC001430A_c01
ctgcaggtcatagtctagaccatcCAATAGTTATTTCTACTGGGAGGTCAAAATGGCCCT
CCGTGCTTGCTCCTCGTCTCTGGTTGCCCGGAGTGCTGCGCGCTCCGTGCAGCCTTTCCG
CCCCGCGGCCGTTCGCCCTGCTCGCATTGCGCCCGTGGCTCGCAAGACTGCCACCGTCGT
CTGCAGCGCCGCCACCGACGCCCCTGCTGCCCCTGTTGCTGAGGCCGTGGTTGGCGAGGT
GAAGTCCGGCGTGGCCCACCTCAAGTTCCAGCGTGGGTCGGCGGACAAGATCCGCCGTGT
GCTGGACGTGATTCGCGGCCGCTCTTACGAGGAGGCTCTGGTGCTCTGCGAGTACATGCC
CTACCGCGCGTGCGAGAAGATCATCAAGTGCCTGATGTCGGCCGCTGCCAACGCCAAGCA
CAACAAGGGTGCCCTGAAGACCAAGCTGGTCGTCAGCGAGTGCTTTGCCGATGAGGGCCC
CGTCCTGAAGCGTGCCCGCCCGCGGGCTCAGGCTCGCGCTAACCTCATCATGAAGCCGAC
CTTCCACATGACCATCCGCGTTGAGGAGCGCGCTCAGTAAGCGCAGTGCGCGCTTGCGGT
GGCCACGGAGCAGGCGGAGCGGCGGTCAGCGTGGGAGCCGTCAGTCAGACAGGTGGCTAG
CTCGTTGCAGCAGCGCGCCAGGCTATCGCAAGGCCGTAATGGAGCCCGCTTGGAGCTTGG
CGATGTAGCAAACACTAGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001430A_C01 KCC001430A_c01
         (740 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO53243.1| ribosomal protein L22 [Chlamydomonas reinhardtii]      338  5e-92
ref|ZP_00106133.1| COG0091: Ribosomal protein L22 [Nostoc puncti...   122  4e-27
ref|NP_893670.1| 50S ribosomal protein L22 [Prochlorococcus mari...   121  1e-26
sp|O24694|RL22_SYNP6 50S ribosomal protein L22 gi|2446895|dbj|BA...   119  4e-26
ref|NP_440664.1| 50S ribosomal protein L22 [Synechocystis sp. PC...   119  4e-26

>gb|AAO53243.1| ribosomal protein L22 [Chlamydomonas reinhardtii]
          Length = 175

 Score =  338 bits (867), Expect = 5e-92
 Identities = 174/175 (99%), Positives = 174/175 (99%)
 Frame = +2

Query: 53  MALRACSSSLVARSAARSVQPFRPAAVRPARIAPVARKTATVVCSAATDAPAAPVAEAVV 232
           MALRACSSSLVARSAARSVQPFRPAAVRPARIAPVARKTATVVCSAATDAPAAPVAEAVV
Sbjct: 1   MALRACSSSLVARSAARSVQPFRPAAVRPARIAPVARKTATVVCSAATDAPAAPVAEAVV 60

Query: 233 GEVKSGVAHLKFQRGSADKIRRVLDVIRGRSYEEALVLCEYMPYRACEKIIKCLMSAAAN 412
           GEVKSGVAHLKFQRGSADKIRRVLDVIRGRSYEEALVLCEYMPYRACEKIIKCLMSAAAN
Sbjct: 61  GEVKSGVAHLKFQRGSADKIRRVLDVIRGRSYEEALVLCEYMPYRACEKIIKCLMSAAAN 120

Query: 413 AKHNKGALKTKLVVSECFADEGPVLKRARPRAQARANLIMKPTFHMTIRVEERAQ 577
           AKHNKGALKTKLVVSECFADEGPVLKRARPRAQ RANLIMKPTFHMTIRVEERAQ
Sbjct: 121 AKHNKGALKTKLVVSECFADEGPVLKRARPRAQGRANLIMKPTFHMTIRVEERAQ 175

>ref|ZP_00106133.1| COG0091: Ribosomal protein L22 [Nostoc punctiforme]
          Length = 125

 Score =  122 bits (307), Expect = 4e-27
 Identities = 61/100 (61%), Positives = 78/100 (78%)
 Frame = +2

Query: 263 KFQRGSADKIRRVLDVIRGRSYEEALVLCEYMPYRACEKIIKCLMSAAANAKHNKGALKT 442
           +F R SA K+RRVLD IRGRSY EAL++ E+MPYRA E I+K L SAAANA+HN G  +T
Sbjct: 20  RFIRISAYKVRRVLDQIRGRSYREALIILEFMPYRATEPILKVLRSAAANAEHNAGLDRT 79

Query: 443 KLVVSECFADEGPVLKRARPRAQARANLIMKPTFHMTIRV 562
           +LV+++ +AD+GP LKR +PRAQ RA  I KPT H+T+ V
Sbjct: 80  QLVITQAYADQGPPLKRFQPRAQGRAYQIRKPTCHITVAV 119

>ref|NP_893670.1| 50S ribosomal protein L22 [Prochlorococcus marinus subsp. pastoris
           str. CCMP1378] gi|33634327|emb|CAE20012.1| 50S ribosomal
           protein L22 [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 128

 Score =  121 bits (304), Expect = 1e-26
 Identities = 61/108 (56%), Positives = 78/108 (71%)
 Frame = +2

Query: 242 KSGVAHLKFQRGSADKIRRVLDVIRGRSYEEALVLCEYMPYRACEKIIKCLMSAAANAKH 421
           K+ +AH K+ RGSA K+RRVLD IRG+SY +AL++ E+MPYR+ + I K L SA ANA+H
Sbjct: 9   KTAIAHGKYIRGSASKVRRVLDQIRGKSYRDALIMLEFMPYRSTDPITKVLRSAVANAEH 68

Query: 422 NKGALKTKLVVSECFADEGPVLKRARPRAQARANLIMKPTFHMTIRVE 565
           N G   + LV+S   AD GPV+KR RPRAQ RA  I K T H++I VE
Sbjct: 69  NLGMDPSSLVISSASADNGPVMKRFRPRAQGRAFSIKKQTCHISISVE 116

>sp|O24694|RL22_SYNP6 50S ribosomal protein L22 gi|2446895|dbj|BAA22454.1| 50S ribosomal
           protein L22 [Synechococcus sp.]
          Length = 117

 Score =  119 bits (299), Expect = 4e-26
 Identities = 64/116 (55%), Positives = 81/116 (69%)
 Frame = +2

Query: 215 VAEAVVGEVKSGVAHLKFQRGSADKIRRVLDVIRGRSYEEALVLCEYMPYRACEKIIKCL 394
           +A     EVK   A  ++ R S  K+RRVLD +RGRSY EAL+L E+MPY++CE I+K L
Sbjct: 1   MAVDTANEVK---AIARYIRMSPSKVRRVLDQLRGRSYREALILLEFMPYKSCEPILKVL 57

Query: 395 MSAAANAKHNKGALKTKLVVSECFADEGPVLKRARPRAQARANLIMKPTFHMTIRV 562
            SA ANA+HN+G   T+LV+S+ +AD GP LKR RPRAQ RA  I K T H+TI V
Sbjct: 58  RSAVANAEHNQGLDPTQLVISQAYADMGPSLKRFRPRAQGRAYQIRKQTCHITIAV 113

>ref|NP_440664.1| 50S ribosomal protein L22 [Synechocystis sp. PCC 6803]
           gi|2500300|sp|P73315|RL22_SYNY3 50S ribosomal protein
           L22 gi|7440987|pir||S77497 ribosomal protein L22 -
           Synechocystis sp. (strain PCC 6803)
           gi|1652422|dbj|BAA17344.1| 50S ribosomal protein L22
           [Synechocystis sp. PCC 6803]
          Length = 121

 Score =  119 bits (299), Expect = 4e-26
 Identities = 59/100 (59%), Positives = 74/100 (74%)
 Frame = +2

Query: 263 KFQRGSADKIRRVLDVIRGRSYEEALVLCEYMPYRACEKIIKCLMSAAANAKHNKGALKT 442
           ++ R S  K+RRVLD IRGRSY EAL++ E+MPY+ACE ++K L SA ANA+HN+G    
Sbjct: 15  RYVRMSPLKVRRVLDQIRGRSYREALIILEFMPYKACEPVLKVLRSAVANAEHNEGLEPA 74

Query: 443 KLVVSECFADEGPVLKRARPRAQARANLIMKPTFHMTIRV 562
            LVVS+ FAD GP L+R RPRAQ RA  I KPT H+T+ V
Sbjct: 75  DLVVSQAFADGGPSLRRFRPRAQGRAYQIRKPTCHITVAV 114



EST assemble image


clone accession position
1 CM047g10_r AV388591 1 372
2 HCL084b10_r AV644217 25 510
3 LC041a07_r AV621793 35 444
4 MX254d10_r BP092452 405 740




Chlamydomonas reinhardtii
Kazusa DNA Research Institute