Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001429A_C01 KCC001429A_c01
(574 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T12113 transcription factor - fava bean gi|2104679|emb|CAA6... 66 1e-19
ref|NP_491688.1| high Mobility Group protein (hmg-3) [Caenorhabd... 62 7e-19
ref|NP_498633.1| high Mobility Group protein (78.6 kD) (hmg-4) [... 59 6e-16
gb|AAO45187.1| SD06504p [Drosophila melanogaster] 57 4e-15
ref|NP_523830.2| Structure specific recognition protein CG4817-P... 57 4e-15
>pir||T12113 transcription factor - fava bean gi|2104679|emb|CAA66480.1|
transcription factor [Vicia faba]
Length = 642
Score = 66.2 bits (160), Expect(2) = 1e-19
Identities = 35/79 (44%), Positives = 46/79 (57%), Gaps = 4/79 (5%)
Frame = +1
Query: 154 AEPKGKRKETEGKAEPPAKKAAKAPPKEKPAKKAPA----KKEKKAKDPNAPKKPLTSFM 321
A G E K EP ++KA +K +K A KK+KK KDPNAPK+ L+ FM
Sbjct: 507 ASQSGGETEKPAKKEPKKDLSSKASSSKKKSKDADVDGVKKKQKKKKDPNAPKRALSGFM 566
Query: 322 YFSNAIRESVKSENPGIAF 378
+FS RE++K NPGI+F
Sbjct: 567 FFSQMERENLKKTNPGISF 585
Score = 52.0 bits (123), Expect(2) = 1e-19
Identities = 21/39 (53%), Positives = 31/39 (78%)
Frame = +2
Query: 383 EVGKVIGEKWKALSADDKKEYDEKAAKDKERYQKEMESY 499
+VG+V+GEKWK LSA++K+ Y+ KA DK+RY+ E+ Y
Sbjct: 587 DVGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEISGY 625
>ref|NP_491688.1| high Mobility Group protein (hmg-3) [Caenorhabditis elegans]
gi|7496859|pir||T34025 hypothetical protein C32F10.5 -
Caenorhabditis elegans gi|1947000|gb|AAC24268.1| Hmg
protein 3 [Caenorhabditis elegans]
Length = 689
Score = 62.0 bits (149), Expect(2) = 7e-19
Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 3/57 (5%)
Frame = +2
Query: 380 GEVGKVIGEKWKALSADDKKEYDEKAAKDKERYQKEMESYGGSSGASKK---PAAKK 541
G+V K G KWK++SADDKKE+++KAA+DK RY+ EM+ Y + G +K P+ KK
Sbjct: 587 GDVAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYKKNGGGVEKASGPSTKK 643
Score = 53.5 bits (127), Expect(2) = 7e-19
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +1
Query: 124 DKAATKEKKAAEPKGKRKETEGKAEPPAK----KAAKAPPKEKPAKKAPAKKEKKAKDPN 291
D+ + +K A G+ E EP K K K KEKP K+ KK KK KDPN
Sbjct: 500 DEYDSGSEKDASGTGESDPDEENIEPKKKESKEKKNKREKKEKPVKEKAVKKGKKTKDPN 559
Query: 292 APKKPLTSFMYFSNAIRESVKSE 360
PK+ T+++ + NA R S+K +
Sbjct: 560 EPKRATTAYIIWFNANRNSMKED 582
>ref|NP_498633.1| high Mobility Group protein (78.6 kD) (hmg-4) [Caenorhabditis
elegans] gi|1174454|sp|P41848|SSRP_CAEEL Probable
structure-specific recognition protein 1 (SSRP1)
(Recombination signal sequence recognition protein)
gi|7446210|pir||T16908 hypothetical protein T20B12.8 -
Caenorhabditis elegans gi|500721|gb|AAA19061.1| Hmg
protein 4 [Caenorhabditis elegans]
Length = 697
Score = 59.3 bits (142), Expect(2) = 6e-16
Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Frame = +2
Query: 383 EVGKVIGEKWKALSADDKKEYDEKAAKDKERYQKEMESY--GGSSGASKKPAAKK 541
+V K G KWK +S+DDKK+++EKA +DK RY+KEM+ Y G +S KP++ K
Sbjct: 583 DVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEYRKNGPPSSSSKPSSSK 637
Score = 46.2 bits (108), Expect(2) = 6e-16
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 22/105 (20%)
Frame = +1
Query: 127 KAATKEKKAAEPKGKRKETE------------GKAEPPAK-----KAAKAPPKEKPAKKA 255
K ++K+++E G + E G++EP ++ K K PKEK KK
Sbjct: 478 KKKKEDKESSEGTGSEPDDEYDSGSEQDSSGTGESEPDSEQDVPSKRRKGEPKEKREKKE 537
Query: 256 P-----AKKEKKAKDPNAPKKPLTSFMYFSNAIRESVKSENPGIA 375
KK KK KDPNAPK+ +++M + A R +K + +A
Sbjct: 538 KREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRNELKEDGDSVA 582
>gb|AAO45187.1| SD06504p [Drosophila melanogaster]
Length = 723
Score = 57.0 bits (136), Expect(2) = 4e-15
Identities = 37/106 (34%), Positives = 52/106 (48%)
Frame = +1
Query: 55 PREQHSPTRDLVSNFSKLLKMAGDKAATKEKKAAEPKGKRKETEGKAEPPAKKAAKAPPK 234
P E S D+ + ++ D + + G +K+ E K+E KK K K
Sbjct: 483 PNENES---DVAEEYDSNVESDSDDDSDASGGGGDSDGAKKKKEKKSEKKEKKEKKH--K 537
Query: 235 EKPAKKAPAKKEKKAKDPNAPKKPLTSFMYFSNAIRESVKSENPGI 372
EK K P+KK+K D PK+ T+FM + N RES+K ENPGI
Sbjct: 538 EKERTKKPSKKKK---DSGKPKRATTAFMLWLNDTRESIKRENPGI 580
Score = 45.8 bits (107), Expect(2) = 4e-15
Identities = 27/68 (39%), Positives = 37/68 (53%), Gaps = 7/68 (10%)
Frame = +2
Query: 383 EVGKVIGEKWKALSADDKKEYDEKAAKDKERYQKEMESY----GGSSG---ASKKPAAKK 541
E+ K GE WK L DK ++++ AAKDK+RY EM +Y GG S K +K
Sbjct: 584 EIAKKGGEMWKELK--DKSKWEDAAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKSSKKRK 641
Query: 542 EKAAPKKK 565
+ +P KK
Sbjct: 642 TEPSPSKK 649
>ref|NP_523830.2| Structure specific recognition protein CG4817-PA [Drosophila
melanogaster] gi|12644386|sp|Q05344|SSRP_DROME
Single-strand recognition protein (SSRP) (Chorion-factor
5) gi|422462|pir||S33688 hypothetical protein - fruit
fly (Drosophila melanogaster) gi|296434|emb|CAA48471.1|
SSRP1 [Drosophila melanogaster]
gi|7291642|gb|AAF47064.1| CG4817-PA [Drosophila
melanogaster]
Length = 723
Score = 57.0 bits (136), Expect(2) = 4e-15
Identities = 37/106 (34%), Positives = 52/106 (48%)
Frame = +1
Query: 55 PREQHSPTRDLVSNFSKLLKMAGDKAATKEKKAAEPKGKRKETEGKAEPPAKKAAKAPPK 234
P E S D+ + ++ D + + G +K+ E K+E KK K K
Sbjct: 483 PNENES---DVAEEYDSNVESDSDDDSDASGGGGDSDGAKKKKEKKSEKKEKKEKKH--K 537
Query: 235 EKPAKKAPAKKEKKAKDPNAPKKPLTSFMYFSNAIRESVKSENPGI 372
EK K P+KK+K D PK+ T+FM + N RES+K ENPGI
Sbjct: 538 EKERTKKPSKKKK---DSGKPKRATTAFMLWLNDTRESIKRENPGI 580
Score = 45.8 bits (107), Expect(2) = 4e-15
Identities = 27/68 (39%), Positives = 37/68 (53%), Gaps = 7/68 (10%)
Frame = +2
Query: 383 EVGKVIGEKWKALSADDKKEYDEKAAKDKERYQKEMESY----GGSSG---ASKKPAAKK 541
E+ K GE WK L DK ++++ AAKDK+RY EM +Y GG S K +K
Sbjct: 584 EIAKKGGEMWKELK--DKSKWEDAAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKSSKKRK 641
Query: 542 EKAAPKKK 565
+ +P KK
Sbjct: 642 TEPSPSKK 649
