KCC001428A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001428A_C01 KCC001428A_c01
ggaagacccactgcacgtgtgtgcggtgagctcatctgggtggggtgggtgtGGGGTGGT
GCGTGTGCATTGTGTGGCGGTGCGCTATTGAAATGTGTATGCTGCCTTTACAAACTGCTC
CATGACAGTTTTGATTCGCAGGGGGCACTCCTCGCCCAACTGCTGTCGGCAAGGCCAGCT
TTACGGCCCGCGGAAGGGAGTACGTGTGTGCGTCCTGTCGTCACCTTTCCGGCCAACCAA
AGCCGACAGTAGAATAGCAGCGAGGTCTGTTCGGAACGTATCAGGATTAACTAAATGCTT
AGGGTTGGTGTGAAGGGGTTGCCTGGCGGAAGCCCGAGCCACTGGGCGTGTTGGAGGACC
ACGCCCGTTGGCTGAAGTTGGAGAGCGCACCGGCGGAAGCAGGTGTTGGCACAGGTGCTC
AGAAGACTGCCGAAGATATCCTGCGCTCCTGCAGTTTTGCAGTTTGGAGCTCGTGGCAGC
GAGCGCGCGGCCAAGTTCTGGTCGGCATGGCGTGGTGCGTAAGGCTGCATGGGCACCAGT
GCGGGTGCGCGTGACTCGCACTCACCCTTTCACGTTGCTCGGAACGAGGGCAGGGCGAGG
CGGCGATACTCATGCTGTGGAATGTGTGCGTGGATTGTGTCCGTCCTTGTGTTCGTGGTT
GCGAGGGACCTGGAGCGGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001428A_C01 KCC001428A_c01
         (679 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAA60698.1| HP8 peptide [Homo sapiens]                             38  0.12
ref|XP_036349.1| similar to sprouty 1 [Homo sapiens]                   38  0.16
pir||T43481 probable mucin DKFZp434C196.1 - human (fragment) gi|...    36  0.47
ref|NP_727773.1| narrow abdomen CG1517-PC [Drosophila melanogast...    36  0.61
ref|NP_727772.1| narrow abdomen CG1517-PB [Drosophila melanogast...    36  0.61

>emb|CAA60698.1| HP8 peptide [Homo sapiens]
          Length = 341

 Score = 38.1 bits (87), Expect = 0.12
 Identities = 52/210 (24%), Positives = 67/210 (31%), Gaps = 4/210 (1%)
 Frame = -2

Query: 663 RNHEHKDGHNPRTHSTA*VSPPRPALVPSNVKG*VRVTRTRTGAHAALRTTPCRPELGRA 484
           R H H+  H P         P +PA               R  A AA  TT  RP   R 
Sbjct: 51  RRHRHQRLHRPGRPVPGRPVPAQPAAGEGQGG-----RGPRAAAAAATLTTRARPRARRR 105

Query: 483 LAATSSKLQ----NCRSAGYLRQSSEHLCQHLLPPVRSPTSANGRGPPTRPVARASARQP 316
             A  S        C +AGYL    E L              +  GP  RP+        
Sbjct: 106 RTARGSARPPPGYGCAAAGYLDGRLEPLY-------------SASGPGLRPLV------- 145

Query: 315 LHTNPKHLVNPDTFRTDLAAILLSALVGRKGDDRTHTRTPFRGP*SWPCRQQLGEECPLR 136
           +   P+  + P ++R    +     L  R+   R  TRT  R P +WP R      C  R
Sbjct: 146 IKQEPRGRMKPSSWRWPACS-----LTSRRRRRRPRTRTRTRRPRTWPPR-----TCSSR 195

Query: 135 IKTVMEQFVKAAYTFQ*RTATQCTRTTPHP 46
            +T        +     R    C   TP P
Sbjct: 196 SRTAARPPCTCSPVTPRRRPRPCPARTPRP 225

>ref|XP_036349.1| similar to sprouty 1 [Homo sapiens]
          Length = 319

 Score = 37.7 bits (86), Expect = 0.16
 Identities = 38/133 (28%), Positives = 51/133 (37%)
 Frame = -2

Query: 678 PLQVPRNHEHKDGHNPRTHSTA*VSPPRPALVPSNVKG*VRVTRTRTGAHAALRTTPCRP 499
           P   PR  +H+     RTH           ++P NV        T    HA L +    P
Sbjct: 65  PRTAPRQEKHE-----RTHE----------IIPINVNNNYEHRHTSHLGHAVLPSNARGP 109

Query: 498 ELGRALAATSSKLQNCRSAGYLRQSSEHLCQHLLPPVRSPTSANGRGPPTRPVARASARQ 319
            L R+ +  S+      S+     SSE   Q LL          GR PPTRPV    + +
Sbjct: 110 ILSRSTSTGSAASSGSNSSA----SSE---QGLL----------GRSPPTRPVPGHRSER 152

Query: 318 PLHTNPKHLVNPD 280
            + T PK L+  D
Sbjct: 153 AIRTQPKQLIVDD 165

>pir||T43481 probable mucin DKFZp434C196.1 - human (fragment)
           gi|6599134|emb|CAB63715.1| hypothetical protein [Homo
           sapiens]
          Length = 580

 Score = 36.2 bits (82), Expect = 0.47
 Identities = 39/125 (31%), Positives = 49/125 (39%), Gaps = 2/125 (1%)
 Frame = -1

Query: 679 TAPGPSQPRTQGRTQSTHTFHSMSIAASPCPRSEQR--ERVSASHAHPHWCPCSLTHHAM 506
           T P  S  RT  R     T    S    P PR+  R   R S +   P   P    H A 
Sbjct: 63  TLPRASLMRTPTRASLMRTPPRASPTRKP-PRASPRTPSRASPTRRLPRASPMGSPHRAS 121

Query: 505 PTRTWPRARCHELQTAKLQERRISSAVF*APVPTPASAGALSNFSQRAWSSNTPSGSGFR 326
           P RT PRA      +        SSA   +P  TP  A   +    RAW++ +PS +   
Sbjct: 122 PMRTPPRASPTGTPSTASPTGTPSSA---SPTGTPPRASP-TGTPPRAWATRSPSTASLT 177

Query: 325 QATPS 311
           + TPS
Sbjct: 178 R-TPS 181

>ref|NP_727773.1| narrow abdomen CG1517-PC [Drosophila melanogaster]
           gi|22832729|gb|AAN09585.1| CG1517-PC [Drosophila
           melanogaster]
          Length = 2148

 Score = 35.8 bits (81), Expect = 0.61
 Identities = 16/31 (51%), Positives = 19/31 (60%)
 Frame = -3

Query: 107 RQHTHFNSAPPHNAHAPPHTHPTQMSSPHTR 15
           +QHTH + APPH+ H  PH H    S PH R
Sbjct: 132 QQHTHHH-APPHSHHPHPHPHGHPHSYPHLR 161

>ref|NP_727772.1| narrow abdomen CG1517-PB [Drosophila melanogaster]
           gi|22832728|gb|AAF48365.2| CG1517-PB [Drosophila
           melanogaster]
          Length = 2196

 Score = 35.8 bits (81), Expect = 0.61
 Identities = 16/31 (51%), Positives = 19/31 (60%)
 Frame = -3

Query: 107 RQHTHFNSAPPHNAHAPPHTHPTQMSSPHTR 15
           +QHTH + APPH+ H  PH H    S PH R
Sbjct: 132 QQHTHHH-APPHSHHPHPHPHGHPHSYPHLR 161



EST assemble image


clone accession position
1 HC050c05_r AV635735 1 512
2 MXL096h09_r BP098649 32 571
3 CM047c09_r AV388581 47 393
4 CM055d09_r AV390210 88 679
5 MXL086c05_r BP098060 118 472




Chlamydomonas reinhardtii
Kazusa DNA Research Institute