KCC001425A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001425A_C01 KCC001425A_c01
cggacacctgctgctcaacagcgagaagatgagcaagagcaccggcaacttcaagaccct
caatgaggccatcggcgagtACTCGTCCGACGCCATGCGCTGGGCTCTGGCGGACGCGGG
CGACGGCATGGACGACGCCAACTTCGAGACCACCACCGCCAACGCCGCCATCCTGCGCAT
CACCAAGGAGCTGGCCTGGATCGAGGAGTGCCTGGCGCCCGGCAGCGGCCTGCGCGAGGG
CCCCGCCGACCTGCTTGCGGACCGCGTGTTCGACAACGCCATCAACATCGCCATCGCCGC
CGCGCGCGACGCCTTTGAGCGCATGGCCTTCCGCGAGGCGCTCAAGGCCGCAGCCTACGA
CCTGnGCAACGCCCGCGACGTGTACCGCCTGGCGTGCGGCCCCGAGGGCATGCACCGCGA
CGTGACGCAGCGCTACATCGAGGTGTCCACGCTGCTGCTGCTGCCCTTCACGCCCCACA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001425A_C01 KCC001425A_c01
         (479 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_172433.1| leucyl-tRNA synthetase -related [Arabidopsis th...   184  5e-46
dbj|BAC98147.1| mKIAA1352 protein [Mus musculus]                      163  9e-40
gb|AAH52715.1| Unknown (protein for MGC:63355) [Mus musculus]         163  9e-40
dbj|BAC27133.1| unnamed protein product [Mus musculus]                163  9e-40
dbj|BAC33766.1| unnamed protein product [Mus musculus]                163  9e-40

>ref|NP_172433.1| leucyl-tRNA synthetase -related [Arabidopsis thaliana]
            gi|25292955|pir||H86229 hypothetical protein [imported] -
            Arabidopsis thaliana gi|2160156|gb|AAB60719.1| Strong
            similarity to S. pombe leucyl-tRNA synthetase
            (gb|Z73100). [Arabidopsis thaliana]
          Length = 1084

 Score =  184 bits (467), Expect = 5e-46
 Identities = 90/159 (56%), Positives = 115/159 (71%)
 Frame = +2

Query: 2    GHLLLNSEKMSKSTGNFKTLNEAIGEYSSDAMRWALADAGDGMDDANFETTTANAAILRI 181
            GH++LNSEKMSKSTGNF+TL ++I E+S+   R+ LADAGDG+DDANF   TANAAILR+
Sbjct: 707  GHIMLNSEKMSKSTGNFRTLRQSIEEFSATGTRFCLADAGDGVDDANFAFETANAAILRL 766

Query: 182  TKELAWIEECLAPGSGLREGPADLLADRVFDNAINIAIAAARDAFERMAFREALKAAAYD 361
            TKEL W+EE L   S LR GP    AD+VF+N +NIA+     A++   FREALK   YD
Sbjct: 767  TKELTWMEEVLDVESSLRTGPPSTYADKVFENDMNIALRLTERAYKDCLFREALKNGFYD 826

Query: 362  LXNARDVYRLACGPEGMHRDVTQRYIEVSTLLLLPFTPH 478
            L  ARD YRL+CG  GMH D+  ++++V T L++P  PH
Sbjct: 827  LQAARDEYRLSCGTGGMHHDLLLKFMDVQTRLIVPICPH 865

>dbj|BAC98147.1| mKIAA1352 protein [Mus musculus]
          Length = 1210

 Score =  163 bits (413), Expect = 9e-40
 Identities = 84/159 (52%), Positives = 109/159 (67%)
 Frame = +2

Query: 2    GHLLLNSEKMSKSTGNFKTLNEAIGEYSSDAMRWALADAGDGMDDANFETTTANAAILRI 181
            GHLLLNSEKMSKSTGNF TL++A+ ++S+D MR ALADAGD ++DANF    A+A ILR+
Sbjct: 742  GHLLLNSEKMSKSTGNFLTLSQAVDKFSADGMRLALADAGDTVEDANFVEAMADAGILRL 801

Query: 182  TKELAWIEECLAPGSGLREGPADLLADRVFDNAINIAIAAARDAFERMAFREALKAAAYD 361
               + W++E LA  S LR GPAD   DRVF + +N  I      +E+M F+EALK   ++
Sbjct: 802  YTWVEWVKEMLASCSSLRSGPADSFNDRVFASEMNAGIIKTDQNYEKMMFKEALKTGFFE 861

Query: 362  LXNARDVYRLACGPEGMHRDVTQRYIEVSTLLLLPFTPH 478
               A+D YR     EGMHR++  R+IEV T+LL PF PH
Sbjct: 862  FQAAKDKYR-ELATEGMHRELVFRFIEVQTILLTPFCPH 899

>gb|AAH52715.1| Unknown (protein for MGC:63355) [Mus musculus]
          Length = 1178

 Score =  163 bits (413), Expect = 9e-40
 Identities = 84/159 (52%), Positives = 109/159 (67%)
 Frame = +2

Query: 2    GHLLLNSEKMSKSTGNFKTLNEAIGEYSSDAMRWALADAGDGMDDANFETTTANAAILRI 181
            GHLLLNSEKMSKSTGNF TL++A+ ++S+D MR ALADAGD ++DANF    A+A ILR+
Sbjct: 710  GHLLLNSEKMSKSTGNFLTLSQAVDKFSADGMRLALADAGDTVEDANFVEAMADAGILRL 769

Query: 182  TKELAWIEECLAPGSGLREGPADLLADRVFDNAINIAIAAARDAFERMAFREALKAAAYD 361
               + W++E LA  S LR GPAD   DRVF + +N  I      +E+M F+EALK   ++
Sbjct: 770  YTWVEWVKEMLASCSSLRSGPADSFNDRVFASEMNAGIIKTDQNYEKMMFKEALKTGFFE 829

Query: 362  LXNARDVYRLACGPEGMHRDVTQRYIEVSTLLLLPFTPH 478
               A+D YR     EGMHR++  R+IEV T+LL PF PH
Sbjct: 830  FQAAKDKYR-ELATEGMHRELVFRFIEVQTILLTPFCPH 867

>dbj|BAC27133.1| unnamed protein product [Mus musculus]
          Length = 1178

 Score =  163 bits (413), Expect = 9e-40
 Identities = 84/159 (52%), Positives = 109/159 (67%)
 Frame = +2

Query: 2    GHLLLNSEKMSKSTGNFKTLNEAIGEYSSDAMRWALADAGDGMDDANFETTTANAAILRI 181
            GHLLLNSEKMSKSTGNF TL++A+ ++S+D MR ALADAGD ++DANF    A+A ILR+
Sbjct: 710  GHLLLNSEKMSKSTGNFLTLSQAVDKFSADGMRLALADAGDTVEDANFVEAMADAGILRL 769

Query: 182  TKELAWIEECLAPGSGLREGPADLLADRVFDNAINIAIAAARDAFERMAFREALKAAAYD 361
               + W++E LA  S LR GPAD   DRVF + +N  I      +E+M F+EALK   ++
Sbjct: 770  YTWVEWVKEMLASCSSLRSGPADSFNDRVFASEMNAGIIKTDQNYEKMMFKEALKTGFFE 829

Query: 362  LXNARDVYRLACGPEGMHRDVTQRYIEVSTLLLLPFTPH 478
               A+D YR     EGMHR++  R+IEV T+LL PF PH
Sbjct: 830  FQAAKDKYR-ELATEGMHRELVFRFIEVQTILLTPFCPH 867

>dbj|BAC33766.1| unnamed protein product [Mus musculus]
          Length = 1178

 Score =  163 bits (413), Expect = 9e-40
 Identities = 84/159 (52%), Positives = 109/159 (67%)
 Frame = +2

Query: 2    GHLLLNSEKMSKSTGNFKTLNEAIGEYSSDAMRWALADAGDGMDDANFETTTANAAILRI 181
            GHLLLNSEKMSKSTGNF TL++A+ ++S+D MR ALADAGD ++DANF    A+A ILR+
Sbjct: 710  GHLLLNSEKMSKSTGNFLTLSQAVDKFSADGMRLALADAGDTVEDANFVEAMADAGILRL 769

Query: 182  TKELAWIEECLAPGSGLREGPADLLADRVFDNAINIAIAAARDAFERMAFREALKAAAYD 361
               + W++E LA  S LR GPAD   DRVF + +N  I      +E+M F+EALK   ++
Sbjct: 770  YTWVEWVKEMLASCSSLRSGPADSFNDRVFASEMNAGIIKTDQNYEKMMFKEALKTGFFE 829

Query: 362  LXNARDVYRLACGPEGMHRDVTQRYIEVSTLLLLPFTPH 478
               A+D YR     EGMHR++  R+IEV T+LL PF PH
Sbjct: 830  FQAAKDKYR-ELATEGMHRELVFRFIEVQTILLTPFCPH 867



EST assemble image


clone accession position
1 LCL080c05_r AV630526 1 479
2 CM047b06_r AV388553 166 339




Chlamydomonas reinhardtii
Kazusa DNA Research Institute