KCC001422A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001422A_C01 KCC001422A_c01
ccCGCATACTGTGTGTAAGCACCGATTGCAATTATAAGTTGCGCATGTAGATATCGGTCT
TCTCCCGACATGCGCTCTGATGACGGTTCCATTTCCGCCAACTTAGGGTGAGAGTTAAGA
GCCGGAGCCCTGTTGCCACCTGCAAAATGCCTTAGCAACATGTGGCAACTATCTGCCCGA
AGCAAGTTGCAAGCCAGCCCAGTTCAGGTTGCCACATGCCATGCTGGGTATTCCCAGCGC
GCTAGCGCACCTGCTTGGGCAGCTCGCTATGGCTGCCGTCGACAGTTGACCCTGGTATGC
CATCGCTAGAGTCGCAGCCCGCTCCGGCCAACCTCGCTCCTCCGCAACCGACACACGAAC
CCGACGTCACTTGATCCCACAATTCCAGCGACTTTTGCGACCGGCTCTCCACCGACCGCT
TGGATGCTTGCGCCCGGTCGCTGCCCCAGCTACTTCCGCGGTGAAATAACAACGGCGAAG
CGACAAGTGGTACCGCTGGTACCACCCACGGGGGCCTTGTGCCCAGGCCGTGGTGGCGCA
TGGTACTATACACGTGGCGTCTTCGCCTGTTTGTGCCGCGCGCGACCCGATGTGGCATCG
TGATTGCTGGGGTCCTCTTGGGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001422A_C01 KCC001422A_c01
         (624 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_599032.1| smoothelin isoform a [Homo sapiens]                   35  0.68
sp|P23739|SUIS_RAT Sucrase-isomaltase, intestinal [Contains: Suc...    35  0.89
ref|NP_037193.1| sucrase-isomaltase [Rattus norvegicus] gi|74354...    34  1.5
emb|CAA53950.1| endothelial nitric oxide synthase [Homo sapiens]       34  1.5
ref|NP_000594.1| nitric oxide synthase 3 (endothelial cell) [Hom...    34  1.5

>ref|NP_599032.1| smoothelin isoform a [Homo sapiens]
          Length = 940

 Score = 35.4 bits (80), Expect = 0.68
 Identities = 46/157 (29%), Positives = 56/157 (35%), Gaps = 10/157 (6%)
 Frame = -3

Query: 622 PKRTPAITMPHRVARGTNR----------RRRHVYSTMRHHGLGTRPPWVVPAVPLVASP 473
           PK TPA   PHR    T R          R   V S         +P     + PL + P
Sbjct: 269 PKETPAAQSPHRGPSDTKRADVAGPRPCQRSLSVLSP-------RQPAQNRESTPLASGP 321

Query: 472 LLFHRGSSWGSDRAQASKRSVESRSQKSLELWDQVTSGSCVGCGGARLAGAGCDSSDGIP 293
             F R    GS R +  K    S S  +  L D     +      ARL G    S+   P
Sbjct: 322 SSFQRA---GSVRDRVHK--FTSDSPMAARLQDGTPQAALSPLTPARLLGPSLTST--TP 374

Query: 292 GSTVDGSHSELPKQVR*RAGNTQHGMWQPELGWLATC 182
            S+  GS S  P     R    Q G+ QP L  L +C
Sbjct: 375 ASSSSGSSSRGPSDTSSRFSKEQRGVAQP-LAQLRSC 410

>sp|P23739|SUIS_RAT Sucrase-isomaltase, intestinal [Contains: Sucrase ; Isomaltase ]
          Length = 1841

 Score = 35.0 bits (79), Expect = 0.89
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +1

Query: 361 PTSLDPTIPATFATGSPPTAWMLAPGRCPSYFRGEITTAKRQVVPLVPPTGALCPGRGGA 540
           PTS         +T +P +    +PG+CP   +GE    +   +P   PT A+C  RG  
Sbjct: 46  PTSNSTPTSTPTSTSTPTSTSTPSPGKCPPE-QGEPINERINCIPEQHPTKAICEERGCC 104

Query: 541 W 543
           W
Sbjct: 105 W 105

>ref|NP_037193.1| sucrase-isomaltase [Rattus norvegicus] gi|7435494|pir||T10799
           sucrose alpha-glucosidase (EC 3.2.1.48) / oligo-1,
           6-glucosidase (EC 3.2.1.10) - rat
           gi|773669|gb|AAA65097.1| sucrase-isomaltase
          Length = 1841

 Score = 34.3 bits (77), Expect = 1.5
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +1

Query: 361 PTSLDPTIPATFATGSPPTAWMLAPGRCPSYFRGEITTAKRQVVPLVPPTGALCPGRGGA 540
           PTS         +T +P +    +PG+CP   +GE    +   +P   PT A+C  RG  
Sbjct: 46  PTSNSTPTSTPTSTSTPTSTSTPSPGKCPPE-QGEPINERINWIPEQHPTKAICEERGCC 104

Query: 541 W 543
           W
Sbjct: 105 W 105

>emb|CAA53950.1| endothelial nitric oxide synthase [Homo sapiens]
          Length = 1203

 Score = 34.3 bits (77), Expect = 1.5
 Identities = 21/61 (34%), Positives = 25/61 (40%)
 Frame = +3

Query: 180 KQVASQPSSGCHMPCWVFPAR*RTCLGSSLWLPSTVDPGMPSLESQPAPANLAPPQPTHE 359
           K VA +P   C +            LG  L L     P  P+ E   APA+L PP P H 
Sbjct: 5   KSVAQEPGPPCGLG-----------LGLGLGLCGKQGPATPAPEPSRAPASLLPPAPEHS 53

Query: 360 P 362
           P
Sbjct: 54  P 54

>ref|NP_000594.1| nitric oxide synthase 3 (endothelial cell) [Homo sapiens]
           gi|266648|sp|P29474|NOS3_HUMAN Nitric-oxide synthase,
           endothelial (EC-NOS) (NOS, type III) (NOSIII)
           (Endothelial NOS) (eNOS) (Constitutive NOS) (cNOS)
           gi|1070453|pir||A47501 nitric-oxide synthase (EC
           1.14.13.39), endothelial - human
           gi|189212|gb|AAA36364.1| nitric oxide synthase
           gi|189260|gb|AAA36372.1| nitric oxide synthase
           gi|348237|gb|AAA36365.1| nitric oxide synthase
           gi|434700|gb|AAA36374.1| nitric oxide synthase
           gi|15077876|gb|AAK83389.1| endothelial nitric oxide
           synthase [Homo sapiens]
           gi|21686530|gb|AAM74944.1|AF519768_1 nitric oxide
           synthase 3 (endothelial cell) [Homo sapiens]
          Length = 1203

 Score = 34.3 bits (77), Expect = 1.5
 Identities = 21/61 (34%), Positives = 25/61 (40%)
 Frame = +3

Query: 180 KQVASQPSSGCHMPCWVFPAR*RTCLGSSLWLPSTVDPGMPSLESQPAPANLAPPQPTHE 359
           K VA +P   C +            LG  L L     P  P+ E   APA+L PP P H 
Sbjct: 5   KSVAQEPGPPCGLG-----------LGLGLGLCGKQGPATPAPEPSRAPASLLPPAPEHS 53

Query: 360 P 362
           P
Sbjct: 54  P 54



EST assemble image


clone accession position
1 MXL027c03_r BP094683 1 376
2 LC062e02_r AV623349 3 490
3 LC081h05_r AV624735 3 440
4 LC013h09_r AV619841 5 495
5 CM046h10_r AV388000 8 285
6 CM047d05_r AV388576 8 265
7 LC003g04_r AV619099 8 579
8 CM084h11_r AV392611 9 556
9 LC072g08_r AV624087 9 465
10 CM064d09_r AV391005 14 631
11 MXL069c10_r BP097056 22 410
12 MXL048h07_r BP095892 24 385
13 MX004h08_r BP086245 78 453
14 MX033b06_r BP087371 78 523
15 LC022g02_r AV620481 114 593




Chlamydomonas reinhardtii
Kazusa DNA Research Institute