KCC001419A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001419A_C01 KCC001419A_c01
gcacgagacacgatcatcgTCTTGCTCCTGTAAGCTGATAAACGCTCTTCTTATTCATTT
AGTCGAACCGTCAGTCCCAAAGGAAGCAGCTATTCACAATGTCATTGCAATTTCTGATAT
GGCTATTTGTGTTTTTACTGCAAGCGGCGCTATTGGGCAGGACGATGTTTGCGCTCATAT
CGCTTTCGGACCTCGAGAACGATTTCATCAACCCGTATGACCTCACGCAACGCCTGAATC
GCTTCGTGGCGCTGGAGTATGCGGCCCAGGTTGTGCTGGTGGCGGTGCTGCTGCTGGGCG
GCAAGTGGTTCCTGGCGGCGCTTCAGGCGGCCATGCTGGTGTACCTGCTGCACAGCTGGC
ACGTCAAGCAGCACACGGTGGACGCCACGGACGTGTTCCGGCAGCTGCCGGTGCAGAAGA
AGCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTAATCATCACGTACCGCT
TCATCGAGAGCGTCATCCACGGCCTCCTCACCGAGGAGGGGCGAGAGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001419A_C01 KCC001419A_c01
         (529 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_176476.1| expressed protein [Arabidopsis thaliana] gi|264...    91  1e-17
pir||D96653 hypothetical protein F16P17.3 [imported] - Arabidops...    90  2e-17
ref|NP_172701.2| expressed protein [Arabidopsis thaliana] gi|284...    89  3e-17
ref|NP_187825.1| expressed protein [Arabidopsis thaliana] gi|123...    82  4e-15
gb|AAF79631.1|AC025416_5 F5O11.7 [Arabidopsis thaliana]                80  1e-14

>ref|NP_176476.1| expressed protein [Arabidopsis thaliana]
           gi|26452314|dbj|BAC43243.1| unknown protein [Arabidopsis
           thaliana] gi|28416891|gb|AAO42976.1| At1g62880
           [Arabidopsis thaliana]
          Length = 137

 Score = 90.5 bits (223), Expect = 1e-17
 Identities = 48/126 (38%), Positives = 67/126 (53%)
 Frame = +3

Query: 120 WLFVFLLQAALLGRTMFALISLSDLENDFINPYDLTQRLNRFVALEYAAQVVLVAVLLLG 299
           W+  FL+   LLG  ++ LISL+DLE D+INPYD   R+N  V  E   Q  L    L+ 
Sbjct: 7   WIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVT 66

Query: 300 GKWFLAALQAAMLVYLLHSWHVKQHTVDATDVFRQLPVQKKRRLIMFGSFLLFFVIITYR 479
           G WF+A L    L Y  H +  KQH +D T++F  L  +KK+RL      +L   +  + 
Sbjct: 67  GHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTLFLTIFW 126

Query: 480 FIESVI 497
            I S +
Sbjct: 127 LIYSTL 132

>pir||D96653 hypothetical protein F16P17.3 [imported] - Arabidopsis thaliana
           gi|8493595|gb|AAF75818.1|AC011000_21 Contains similarity
           to a 14KDa protein found on ER-derived vesicles from
           Saccharomyces cerevisiae gi|6321384.  ESTs gb|T22150,
           gb|AI100633, gb|AA395672 come from this gene.
           [Arabidopsis thaliana]
          Length = 126

 Score = 90.1 bits (222), Expect = 2e-17
 Identities = 49/118 (41%), Positives = 67/118 (56%)
 Frame = +3

Query: 120 WLFVFLLQAALLGRTMFALISLSDLENDFINPYDLTQRLNRFVALEYAAQVVLVAVLLLG 299
           W+  FL+   LLG  ++ LISL+DLE D+INPYD   R+N  V  E   Q  L    L+ 
Sbjct: 7   WIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVT 66

Query: 300 GKWFLAALQAAMLVYLLHSWHVKQHTVDATDVFRQLPVQKKRRLIMFGSFLLFFVIIT 473
           G WF+A L    L Y  H +  KQH +D T++F  L  +KK+RL     F L ++I+T
Sbjct: 67  GHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRL-----FKLAYIILT 119

>ref|NP_172701.2| expressed protein [Arabidopsis thaliana] gi|28416577|gb|AAO42819.1|
           At1g12390 [Arabidopsis thaliana]
          Length = 137

 Score = 89.4 bits (220), Expect = 3e-17
 Identities = 47/126 (37%), Positives = 66/126 (52%)
 Frame = +3

Query: 120 WLFVFLLQAALLGRTMFALISLSDLENDFINPYDLTQRLNRFVALEYAAQVVLVAVLLLG 299
           WL  F    AL+G  ++ L+ L+DLE D+INPYD   R+N  V  E+  Q VL    LL 
Sbjct: 7   WLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLT 66

Query: 300 GKWFLAALQAAMLVYLLHSWHVKQHTVDATDVFRQLPVQKKRRLIMFGSFLLFFVIITYR 479
           G WF+  L    L Y  H +  +QH VD T++F  L  +KK+RL      +L   +  + 
Sbjct: 67  GHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFW 126

Query: 480 FIESVI 497
            I S +
Sbjct: 127 MIYSAL 132

>ref|NP_187825.1| expressed protein [Arabidopsis thaliana]
           gi|12322050|gb|AAG51073.1|AC069472_13 unknown protein;
           8145-9251 [Arabidopsis thaliana]
           gi|30017219|gb|AAP12843.1| At3g12180 [Arabidopsis
           thaliana]
          Length = 146

 Score = 82.0 bits (201), Expect = 4e-15
 Identities = 37/140 (26%), Positives = 73/140 (51%)
 Frame = +3

Query: 99  MSLQFLIWLFVFLLQAALLGRTMFALISLSDLENDFINPYDLTQRLNRFVALEYAAQVVL 278
           M+    +W+  F +  AL+    + +I L+DLE D++NP++ + R+NR V  E+  Q  L
Sbjct: 1   MAWDLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSL 60

Query: 279 VAVLLLGGKWFLAALQAAMLVYLLHSWHVKQHTVDATDVFRQLPVQKKRRLIMFGSFLLF 458
             + LL   W    +   + VY    +  +++ +D T+VFR +  +KK R    G ++  
Sbjct: 61  CLLFLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFL 120

Query: 459 FVIITYRFIESVIHGLLTEE 518
           F+++ +R   S ++    ++
Sbjct: 121 FIMVVFRLTLSAVYSFTEDD 140

>gb|AAF79631.1|AC025416_5 F5O11.7 [Arabidopsis thaliana]
          Length = 455

 Score = 80.5 bits (197), Expect = 1e-14
 Identities = 42/98 (42%), Positives = 55/98 (55%)
 Frame = +3

Query: 153 LGRTMFALISLSDLENDFINPYDLTQRLNRFVALEYAAQVVLVAVLLLGGKWFLAALQAA 332
           L   +F L+ L+DLE D+INPYD   R+N  V  E+  Q VL    LL G WF+  L   
Sbjct: 10  LANGIFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLP 69

Query: 333 MLVYLLHSWHVKQHTVDATDVFRQLPVQKKRRLIMFGS 446
            L Y  H +  +QH VD T++F  L  +KK+RLI   S
Sbjct: 70  YLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLIEMSS 107



EST assemble image


clone accession position
1 CM046f12_r AV387988 1 327
2 HC040c05_r AV634969 20 475
3 HC040c03_r AV634968 20 473
4 MX238g02_r BP091438 22 306
5 LC088e05_r AV625149 35 529




Chlamydomonas reinhardtii
Kazusa DNA Research Institute