KCC001417A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001417A_C01 KCC001417A_c01
ccgaggcctgcgccgccatcCTGTGGAAGAGCCGCTCTGCCGCCGGCGAGGCCACTGAGG
CCCTGCGCATCACCTCGGCCGAGCTGGTGAAGTTCGGCGTCATGGACCACATCGTGCCGG
AGCCGCTGGGCGGCGCGCACAGCGACCCGCTGGCGGCCTTCCCCATGATCAAGGAGAGCA
TCCTCAACGTCTACTCCGAGTACGCCGTGATGAGCGAGGAGGAGATCAAGCTGGACCGCT
ACGCCAAGTTCCGCAAGCTGGGCCAGTTCCAAGAGTTTGTGGTCAAGGGCGGTGACTGGC
GCACCGCCCTGGCGGAGCGCGCGGCAACCTCCGGCACCACCACCAAGACCGGCGCCTGGG
CCGCCACTGAGGCGGAGGCGCGCTACATCGAGCAGCTGGTGGACGCGGACGAGAAGTGGG
AGAAGCTCATGGCGGAGGGCGCCGAGTGGCTCAACAAGCCCGTGCAGCCGCCGGGCCTGG
GCCGGTCAGGCATCATGGACGTGGCGGTGTCTATGGTGGAGGCGCGGCGGCGGAAGCAGC
AGCAGGCGGGCCAGGTGCACAAGTCGGCACCCGCCCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001417A_C01 KCC001417A_c01
         (578 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_565880.1| alpha-carboxyltransferase -related [Arabidopsis...    97  2e-19
pir||B84800 probable alpha-carboxyltransferase [imported] - Arab...    97  2e-19
gb|AAF89549.1|AF165159_1 carboxyl transferase alpha subunit [Gly...    92  5e-18
gb|AAF89548.1|AF165158_1 carboxyl transferase alpha subunit [Gly...    92  5e-18
gb|AAF80496.1|AF164510_1 carboxyl transferase alpha subunit [Gly...    91  9e-18

>ref|NP_565880.1| alpha-carboxyltransferase -related [Arabidopsis thaliana]
           gi|30687368|ref|NP_850291.1| alpha-carboxyltransferase
           -related [Arabidopsis thaliana]
           gi|6851091|gb|AAF29414.1|AF056969_1 carboxyltransferase
           alpha subunit [Arabidopsis thaliana]
           gi|6851093|gb|AAF29415.1|AF056970_1 carboxyltransferase
           alpha subunit [Arabidopsis thaliana]
          Length = 769

 Score = 97.1 bits (240), Expect = 2e-19
 Identities = 52/91 (57%), Positives = 61/91 (66%)
 Frame = +3

Query: 3   EACAAILWKSRSAAGEATEALRITSAELVKFGVMDHIVPEPLGGAHSDPLAAFPMIKESI 182
           EACAAILWK+  AA EA E LRITS ELVK  V D I+PEPLGGAH+DP      IK +I
Sbjct: 320 EACAAILWKTSKAAPEAAEKLRITSKELVKLNVADGIIPEPLGGAHADPSWTSQQIKIAI 379

Query: 183 LNVYSEYAVMSEEEIKLDRYAKFRKLGQFQE 275
               +E+  MS EE+   R AK+RK+G F E
Sbjct: 380 NENMNEFGKMSGEELLKHRMAKYRKIGVFIE 410

>pir||B84800 probable alpha-carboxyltransferase [imported] - Arabidopsis
           thaliana gi|4895181|gb|AAD32768.1|AC007661_5 putative
           alpha-carboxyltransferase [Arabidopsis thaliana]
          Length = 796

 Score = 97.1 bits (240), Expect = 2e-19
 Identities = 52/91 (57%), Positives = 61/91 (66%)
 Frame = +3

Query: 3   EACAAILWKSRSAAGEATEALRITSAELVKFGVMDHIVPEPLGGAHSDPLAAFPMIKESI 182
           EACAAILWK+  AA EA E LRITS ELVK  V D I+PEPLGGAH+DP      IK +I
Sbjct: 347 EACAAILWKTSKAAPEAAEKLRITSKELVKLNVADGIIPEPLGGAHADPSWTSQQIKIAI 406

Query: 183 LNVYSEYAVMSEEEIKLDRYAKFRKLGQFQE 275
               +E+  MS EE+   R AK+RK+G F E
Sbjct: 407 NENMNEFGKMSGEELLKHRMAKYRKIGVFIE 437

>gb|AAF89549.1|AF165159_1 carboxyl transferase alpha subunit [Glycine max]
          Length = 690

 Score = 92.0 bits (227), Expect = 5e-18
 Identities = 59/168 (35%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
 Frame = +3

Query: 3   EACAAILWKSRSAAGEATEALRITSAELVKFGVMDHIVPEPLGGAHSDPLAAFPMIKESI 182
           EACAAILWK+  A+ +A E L+IT+ EL K  + D ++PEPLGGAH+DP      IK++I
Sbjct: 313 EACAAILWKTAKASPKAAEKLKITATELCKLQIADGVIPEPLGGAHADPEWTSQQIKKAI 372

Query: 183 LNVYSEYAVMSEEEIKLDRYAKFRKLGQFQEFV---------VKGGDWRTALAERAATSG 335
                E   M+ EE+   R  KFRK+G FQE +         +K  D   A    A    
Sbjct: 373 KETMDELTKMNTEELLKHRMLKFRKIGGFQEGIPIDPKRKANMKKRDLSIAKIPDAELEV 432

Query: 336 TTTKTGAWAATEAEARYIEQLVDADEKWEKLMAEGAEWLNKPVQPPGL 479
              K         E+  +   +D DE  ++L  E     ++ V+  GL
Sbjct: 433 EVEKLKQQVLEAKESSPVPPKLDLDEMLKQLAREVGLEYSEAVKATGL 480

>gb|AAF89548.1|AF165158_1 carboxyl transferase alpha subunit [Glycine max]
          Length = 690

 Score = 92.0 bits (227), Expect = 5e-18
 Identities = 59/168 (35%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
 Frame = +3

Query: 3   EACAAILWKSRSAAGEATEALRITSAELVKFGVMDHIVPEPLGGAHSDPLAAFPMIKESI 182
           EACAAILWK+  A+ +A E L+IT+ EL K  + D ++PEPLGGAH+DP      IK++I
Sbjct: 313 EACAAILWKTAKASPKAAEKLKITATELCKLQIADGVIPEPLGGAHADPEWTSQQIKKAI 372

Query: 183 LNVYSEYAVMSEEEIKLDRYAKFRKLGQFQEFV---------VKGGDWRTALAERAATSG 335
                E   M+ EE+   R  KFRK+G FQE +         +K  D   A    A    
Sbjct: 373 KETMDELTKMNTEELLKHRMLKFRKIGGFQEGIPIDPKRKANMKKRDLSIAKIPDAELEV 432

Query: 336 TTTKTGAWAATEAEARYIEQLVDADEKWEKLMAEGAEWLNKPVQPPGL 479
              K         E+  +   +D DE  ++L  E     ++ V+  GL
Sbjct: 433 EVEKLKQQVLEAKESSPVPPKLDLDEMLKQLAREVGLEYSEAVKATGL 480

>gb|AAF80496.1|AF164510_1 carboxyl transferase alpha subunit [Glycine max]
          Length = 709

 Score = 91.3 bits (225), Expect = 9e-18
 Identities = 45/91 (49%), Positives = 59/91 (64%)
 Frame = +3

Query: 3   EACAAILWKSRSAAGEATEALRITSAELVKFGVMDHIVPEPLGGAHSDPLAAFPMIKESI 182
           EACAAILWK+  A+ +A E L+IT+ EL K  + D ++PEPLGGAH+DP      IK++I
Sbjct: 313 EACAAILWKTAKASPKAAEKLKITATELCKLQIADGVIPEPLGGAHADPEWTSQQIKKAI 372

Query: 183 LNVYSEYAVMSEEEIKLDRYAKFRKLGQFQE 275
                E   M+ EE+   R  KFRK+G FQE
Sbjct: 373 KETMDELTKMNTEELLKHRMLKFRKIGGFQE 403



EST assemble image


clone accession position
1 HC018g06_r AV633269 1 496
2 CM046f04_r AV388038 21 578




Chlamydomonas reinhardtii
Kazusa DNA Research Institute