KCC001415A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001415A_C01 KCC001415A_c01
gaactagtctcgagttttttttttttttttttCATCAAACGGACTGTTACACACAGCCTC
CGCTCCACACCCAGCTCCGACCACAGGCTACCACGACTCAACGAACGGAAGGGAACGGAC
CCCTTCGCATGCACCGTACACTGGGTCCGTTGGGTCCGTTTCGTCGTGCCCTAAACCGGG
GAATCCAATCCCTGCTTCCCGCCGCATATTAGCGACGTCACTCCTGCCTTCATGCACTCG
GCACGCCAACGCTCGCACCAACCCACTCACTGCGTCCTAGCGCAGCGCACAGCACGCACG
GCAGCAGCCTGACCTCGATCCCCTCGCACCCAGAGGCCGCCCTCCCGCCTCCCCATGTCT
CCGTCTCCGTCTCCGTCTCCGTCTCCGCCTCCGCCTCCGCCTCCGCCTGCGCCTGCTCCT
GCTGCTGCCAGCATCTGCAACGCATCTCCTCCTTGCCTAGCGCTCGACCACGACCAACGC
GACACGTGGCCCATGTTCCGCACCGGCAGCTCCCAACCCTCTGCTCCCTCCCACA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001415A_C01 KCC001415A_c01
         (535 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P21997|SSGP_VOLCA SULFATED SURFACE GLYCOPROTEIN 185 (SSG 185)...    58  7e-08
prf||1604369A sulfated surface glycoprotein SSG185                     58  7e-08
ref|ZP_00093518.1| COG2885: Outer membrane protein and related p...    56  3e-07
ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|...    56  3e-07
pir||B48232 cysteine-rich extensin-like protein 2 precursor - co...    54  1e-06

>sp|P21997|SSGP_VOLCA SULFATED SURFACE GLYCOPROTEIN 185 (SSG 185) gi|99441|pir||A33647
           sulfated surface glycoprotein 185 - Volvox carteri
           gi|1405821|emb|CAA35953.1| SULFATED SURFACE GLYCOPROTEIN
           185 [Volvox carteri]
          Length = 485

 Score = 58.2 bits (139), Expect = 7e-08
 Identities = 30/71 (42%), Positives = 38/71 (53%)
 Frame = +1

Query: 202 PHISDVTPAFMHSARQRSHQPTHCVLAQRTARTAAA*PRSPRTQRPPSRLPMSPSPSPSP 381
           P+++ + PA  +S    S QPT           ++  P  P + RPPS  P SPSP P P
Sbjct: 215 PNVNPIGPAPNNSPLPPSPQPT----------ASSRPPSPPPSPRPPSPPPPSPSPPPPP 264

Query: 382 SPPPPPPPPAP 414
            PPPPPPPP P
Sbjct: 265 PPPPPPPPPPP 275

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 20/38 (52%), Positives = 21/38 (54%)
 Frame = +1

Query: 313 PRSPRTQRPPSRLPMSPSPSPSPSPPPPPPPPAPAPAA 426
           P  P    PPS  P    PSPSP  PPPP PP+  PAA
Sbjct: 286 PPPPPPPPPPSPSPPRKPPSPSPPVPPPPSPPSVLPAA 323

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 20/47 (42%), Positives = 21/47 (44%)
 Frame = +1

Query: 313 PRSPRTQRPPSRLPMSPSPSPSPSPPPPPPPPAPAPAAASICNASPP 453
           P  P    PP   P  P P P P PPPPPP P+P     S     PP
Sbjct: 266 PPPPPPPPPPPSPPPPPPPPPPPPPPPPPPSPSPPRKPPSPSPPVPP 312

 Score = 42.0 bits (97), Expect = 0.005
 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
 Frame = +1

Query: 313 PRSPRTQRPPSRLPMSPSPSPSPSPP-------PPPPPPAPAPAAASICNASPPC 456
           P SP    PP   P  P P PSPSPP       PP PPP   P+        P C
Sbjct: 275 PPSPPPPPPPPPPPPPPPPPPSPSPPRKPPSPSPPVPPPPSPPSVLPAATGFPFC 329

 Score = 40.8 bits (94), Expect = 0.011
 Identities = 19/47 (40%), Positives = 20/47 (42%)
 Frame = +1

Query: 313 PRSPRTQRPPSRLPMSPSPSPSPSPPPPPPPPAPAPAAASICNASPP 453
           P  P    PPS  P  P P P P PPPPP P  P    +      PP
Sbjct: 267 PPPPPPPPPPSPPPPPPPPPPPPPPPPPPSPSPPRKPPSPSPPVPPP 313

>prf||1604369A sulfated surface glycoprotein SSG185
          Length = 453

 Score = 58.2 bits (139), Expect = 7e-08
 Identities = 30/71 (42%), Positives = 38/71 (53%)
 Frame = +1

Query: 202 PHISDVTPAFMHSARQRSHQPTHCVLAQRTARTAAA*PRSPRTQRPPSRLPMSPSPSPSP 381
           P+++ + PA  +S    S QPT           ++  P  P + RPPS  P SPSP P P
Sbjct: 215 PNVNPIGPAPNNSPLPPSPQPT----------ASSRPPSPPPSPRPPSPPPPSPSPPPPP 264

Query: 382 SPPPPPPPPAP 414
            PPPPPPPP P
Sbjct: 265 PPPPPPPPPPP 275

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 20/47 (42%), Positives = 21/47 (44%)
 Frame = +1

Query: 313 PRSPRTQRPPSRLPMSPSPSPSPSPPPPPPPPAPAPAAASICNASPP 453
           P  P    PP   P  P P P P PPPPPP P+P     S     PP
Sbjct: 266 PPPPPPPPPPPSPPPPPPPPPPPPPPPPPPSPSPPRKPPSPSPPVPP 312

 Score = 40.8 bits (94), Expect = 0.011
 Identities = 19/47 (40%), Positives = 20/47 (42%)
 Frame = +1

Query: 313 PRSPRTQRPPSRLPMSPSPSPSPSPPPPPPPPAPAPAAASICNASPP 453
           P  P    PPS  P  P P P P PPPPP P  P    +      PP
Sbjct: 267 PPPPPPPPPPSPPPPPPPPPPPPPPPPPPSPSPPRKPPSPSPPVPPP 313

>ref|ZP_00093518.1| COG2885: Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Novosphingobium
           aromaticivorans]
          Length = 173

 Score = 56.2 bits (134), Expect = 3e-07
 Identities = 22/47 (46%), Positives = 27/47 (56%)
 Frame = +1

Query: 352 PMSPSPSPSPSPPPPPPPPAPAPAAASICNASPPCLALDHDQRDTWP 492
           P+  +P P P PPPPPPPP P P  A +CN  P  +  D D+ D  P
Sbjct: 30  PVEETPPPPPPPPPPPPPPPPPPPPAPVCNKGPYIVFFDWDKSDITP 76

>ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|dbj|BAC45786.1|
           blr0521 [Bradyrhizobium japonicum USDA 110]
          Length = 745

 Score = 55.8 bits (133), Expect = 3e-07
 Identities = 39/116 (33%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
 Frame = +1

Query: 199 PPHISDVTPAFMHSARQRSHQPTHCVLAQRTARTAAA*PRSPRTQRPPSRLPMSPSPSPS 378
           PP  +   P+   +A  + H PT    A   AR A   P  P    P    P  P P+  
Sbjct: 113 PPPAAPKQPSPPPAAAPQQHAPTPPPPAPPAARPAPTPPAPPPAAAPQHAPPPPPPPAAR 172

Query: 379 PSPPPPPPPPA-------PAPAAASICNASPPCLALDHDQRDTWPMFRTGSSQPSA 525
           P+P PPPPPPA       PAP A     A PP            P  R GS  P+A
Sbjct: 173 PTPTPPPPPPAGPAARPTPAPTATPTPVAPPPAA----------PTARPGSPAPAA 218

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = +1

Query: 280 AQRTARTAAA*PRSPRTQRPPSRLPMSPSPSPSPSPPPP----PPPPAPAPAAASICNAS 447
           A+  A   AA P  P    PP+  P  P+  P P PPP     PPPP P PAA      S
Sbjct: 65  ARPAAPPPAAAPPHPPAAPPPAAAPPRPAAPPPPPPPPAARPAPPPPPPPPAAPK--QPS 122

Query: 448 PPCLALDHDQRDTWPMFRTGSSQPS 522
           PP  A       T P     +++P+
Sbjct: 123 PPPAAAPQQHAPTPPPPAPPAARPA 147

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 34/106 (32%), Positives = 38/106 (35%), Gaps = 12/106 (11%)
 Frame = +1

Query: 190 PCFPPHISDVTPAFMHSARQRSHQPTHCVLAQRTARTAAA*PR--------SPRTQRPPS 345
           P   P  +   PA    A    H P     A    R AA  P         +P    PP 
Sbjct: 56  PGAAPPAAPARPAAPPPAAAPPHPPAAPPPAAAPPRPAAPPPPPPPPAARPAPPPPPPPP 115

Query: 346 RLPMSPSPSPSPSP----PPPPPPPAPAPAAASICNASPPCLALDH 471
             P  PSP P+ +P    P PPPP  PA   A    A PP  A  H
Sbjct: 116 AAPKQPSPPPAAAPQQHAPTPPPPAPPAARPAPTPPAPPPAAAPQH 161

 Score = 36.6 bits (83), Expect = 0.21
 Identities = 19/47 (40%), Positives = 25/47 (52%)
 Frame = +1

Query: 313 PRSPRTQRPPSRLPMSPSPSPSPSPPPPPPPPAPAPAAASICNASPP 453
           P+ P    PP+      +P P+ +PP PP   AP PAAA    A+PP
Sbjct: 52  PKGPPGAAPPAAPARPAAPPPAAAPPHPPA--APPPAAAPPRPAAPP 96

 Score = 33.1 bits (74), Expect = 2.3
 Identities = 20/59 (33%), Positives = 23/59 (38%)
 Frame = +1

Query: 352 PMSPSPSPSPSPPPPPPPPAPAPAAASICNASPPCLALDHDQRDTWPMFRTGSSQPSAP 528
           P    P   P  PP  PP A  PAA +   A PP  A  H      P       +P+AP
Sbjct: 39  PQETGPDGKPKQPPKGPPGAAPPAAPARPAAPPPAAAPPHPPAAPPP--AAAPPRPAAP 95

 Score = 31.2 bits (69), Expect = 8.9
 Identities = 31/111 (27%), Positives = 37/111 (32%), Gaps = 1/111 (0%)
 Frame = +1

Query: 199 PPHISDVTPAFMHSARQRSHQPTHCVLAQRTARTAAA*PRSPRTQRPPSRLPMSPSPSPS 378
           PP      P     A   +  PT    A        A   +P    PP+  P +P P   
Sbjct: 203 PPAAPTARPGSPAPAATPAPTPTPAPTATPAPTATPAPGSTPGA--PPAGRPGAPPPGVR 260

Query: 379 P-SPPPPPPPPAPAPAAASICNASPPCLALDHDQRDTWPMFRTGSSQPSAP 528
           P SPP    PPAP    A     +P   A       T P  R G +   AP
Sbjct: 261 PGSPPAAGSPPAPGATPAPTTTPAPGGTA-------TPPSGRPGPASTPAP 304

>pir||B48232 cysteine-rich extensin-like protein 2 precursor - common tobacco
           gi|310925|gb|AAA34060.1| cysteine-rich extensin-like
           protein-2
          Length = 196

 Score = 54.3 bits (129), Expect = 1e-06
 Identities = 24/45 (53%), Positives = 26/45 (57%)
 Frame = +1

Query: 313 PRSPRTQRPPSRLPMSPSPSPSPSPPPPPPPPAPAPAAASICNAS 447
           P  P   RP    P  P P P PSPPPPPPP  P PA +S C+AS
Sbjct: 79  PPPPPRPRPCPSPPPPPQPRPRPSPPPPPPPSPPPPAPSSSCSAS 123

 Score = 41.6 bits (96), Expect = 0.007
 Identities = 22/50 (44%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +1

Query: 313 PRSPRTQRPPSRLPMSPSPSPSPSPPPPPPP---PAPAPAAASICNASPP 453
           P  P    PP R    P P P PSPPPPP P   P+P P        SPP
Sbjct: 55  PPPPPWPCPPPRPRPRPRPRPCPSPPPPPRPRPCPSPPPPPQPRPRPSPP 104

 Score = 40.8 bits (94), Expect = 0.011
 Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 313 PRSPRTQRPPSRLPMSPSPSPSPSPPPPP-PPPAPAPAAASICNASPP 453
           PR     RP    P  P P P PSPPPPP P P P+P      +  PP
Sbjct: 67  PRPRPRPRPCPSPPPPPRPRPCPSPPPPPQPRPRPSPPPPPPPSPPPP 114

 Score = 40.0 bits (92), Expect = 0.019
 Identities = 22/52 (42%), Positives = 23/52 (43%), Gaps = 5/52 (9%)
 Frame = +1

Query: 313 PRSPRTQRPPSRLPMSPSPSPSPSP-----PPPPPPPAPAPAAASICNASPP 453
           P  P   RP  R    PSP P P P     PPPPP P P P+       SPP
Sbjct: 61  PCPPPRPRPRPRPRPCPSPPPPPRPRPCPSPPPPPQPRPRPSPPPPPPPSPP 112



EST assemble image


clone accession position
1 LCL047f10_r AV628829 1 437
2 CM055a06_r AV390192 33 608
3 CM046d09_r AV388025 36 535




Chlamydomonas reinhardtii
Kazusa DNA Research Institute