KCC001406A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001406A_C01 KCC001406A_c01
gttggtggatatgccgcttcaccccggttagcgcacgtgcttgagtgctgtgccgcagta
gggtggatatgtcgtggttcTCAACCGAAGATTAGCACCGACACGCGAAGCAACGGGTAT
CGGGTGTGAGTTTGAGCCACACGGTGGGTTTATTGATGGAAATGCGGGCTTCCGCTTGGC
ACAACAGCAGAAGAACACTATGTTGCCGATTTGCTGCCGGTACCTTCTTGATGGTGGTGT
TGGCGGAGGGTGGGAGGAGAGACAAGCCGAAGCCGTCGCCATTGACGCGCGCAGCTAGTG
CCTTTGACCTGGCTGAACCCCCGCCCTCCGGACCAACACCTGAAACTTGTGCCATGCAAG
AAACGTTGTTGGAGGTTCAAGATTCACAGTTCTGCGCCGCTGTGCTGGATTGTTTCGTGG
ATCTTGCGTATGTCGTAGTAGTGTTGTAGGTGGTGTAAAGCGCGCGTGCATGTGTGTGTG
CGCAAGGTGCGCGTCCAGCAACGCAGGTGCAAGCCGTATGGCTGCACCTCCTGTCGGTGT
GTCGGATGGTCGGGATGTGGTTGCTGTGGCTGGCCCCGCAGGACGTATTACCCGCGTGAC
AATGGGAACGAGGTGCGGGGTTATCCGGCAACACATGCCCAAGAGCTCTGCATTGGATGG
GTGCACGTCATGCACGGATAGGCTTGACACGAAGCCAAGAATTTTTCTCGTGTGAGTCGT
GTGAGGGGAAGGCGGGAGCATTGTACAGCAACAAACAAAGTTTGCGCATTGCACGAAACA
TGAGTAGCGGAAGTAGCGCACCTGGACGATTGCGCCGTGATA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001406A_C01 KCC001406A_c01
         (822 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_309353.1| ENSANGP00000015008 [Anopheles gambiae] gi|21292...    40  0.060
ref|ZP_00040388.1| COG3525: N-acetyl-beta-hexosaminidase [Xylell...    31  0.083
ref|NP_780011.1| beta-hexosaminidase precursor [Xylella fastidio...    31  0.11
ref|NP_298137.1| beta-hexosaminidase precursor [Xylella fastidio...    29  0.14
gb|AAA75509.1| orf                                                     38  0.17

>ref|XP_309353.1| ENSANGP00000015008 [Anopheles gambiae] gi|21292910|gb|EAA05055.1|
           ENSANGP00000015008 [Anopheles gambiae str. PEST]
          Length = 372

 Score = 39.7 bits (91), Expect = 0.060
 Identities = 49/188 (26%), Positives = 70/188 (37%), Gaps = 11/188 (5%)
 Frame = -1

Query: 618 PHLVPIVTRVIRPAGPATA---TTSRPSDTPT-----GGAAIRLAPAL---LDAHLAHTH 472
           P + PI++ ++ P  P T+   T S PS  PT       AA   APA    LD   A T 
Sbjct: 176 PMMPPIISYLLPPMPPTTSVPSTMSSPSAIPTTSTSSAAAAAHNAPASMPSLDTVYASTS 235

Query: 471 MHARFTPPTTLLRHTQDPRNNPAQRRRTVNLEPPTTFLAWHKFQVLVRRAGVQPGQRH*L 292
           M    + P+T  R      N P          PPTT             A    G +   
Sbjct: 236 MMPPPSTPSTSNRAAAS--NQPTS--------PPTT-------------AANTNGSKRGS 272

Query: 291 RASMATASACLSSHPPPTPPSRRYRQQIGNIVFFCCCAKRKPAFPSINPPCGSNSHPIPV 112
           RA+  ++ +   +  PPTPP+ + R +  ++          P   S  PP      P P+
Sbjct: 273 RAAPKSSPSTSRTPEPPTPPAPKRRNRRASVAASQSPYLTAPPSQSPIPPLPPTPRPPPI 332

Query: 111 ASRVGANL 88
           A+     L
Sbjct: 333 ATPTDTTL 340

>ref|ZP_00040388.1| COG3525: N-acetyl-beta-hexosaminidase [Xylella fastidiosa Ann-1]
          Length = 812

 Score = 31.2 bits (69), Expect(2) = 0.083
 Identities = 18/59 (30%), Positives = 26/59 (43%)
 Frame = -1

Query: 576 GPATATTSRPSDTPTGGAAIRLAPALLDAHLAHTHMHARFTPPTTLLRHTQDPRNNPAQ 400
           GP T  +  P+DT    +A  LA  L        H+H   TP    +R  +DP++   Q
Sbjct: 77  GPHTLISIPPNDTDAQHSATYLATLLQHTRNLTLHIHTETTPKPDSIRLQRDPQSPVTQ 135

 Score = 26.9 bits (58), Expect(2) = 0.083
 Identities = 22/65 (33%), Positives = 29/65 (43%)
 Frame = -3

Query: 805 PGALLPLLMFRAMRKLCLLLYNAPAFPSHDSHEKNSWLRVKPIRA*RAPIQCRALGHVLP 626
           P   LPLL  RA+  LC+   +  +F +  SH K S   + P  A   P+        LP
Sbjct: 8   PTQALPLL--RALLTLCIAALSTTSFDTTASHHKKSQHPLPPRTASSPPLP------PLP 59

Query: 625 DNPAP 611
             PAP
Sbjct: 60  LIPAP 64

>ref|NP_780011.1| beta-hexosaminidase precursor [Xylella fastidiosa Temecula1]
           gi|28057818|gb|AAO29660.1| beta-hexosaminidase precursor
           [Xylella fastidiosa Temecula1]
          Length = 812

 Score = 31.2 bits (69), Expect(2) = 0.11
 Identities = 18/59 (30%), Positives = 26/59 (43%)
 Frame = -1

Query: 576 GPATATTSRPSDTPTGGAAIRLAPALLDAHLAHTHMHARFTPPTTLLRHTQDPRNNPAQ 400
           GP T  +  P+DT    +A  LA  L        H+H   TP    +R  +DP++   Q
Sbjct: 77  GPHTLISIPPNDTDAQHSATYLATLLQHTRNLTLHIHTETTPTPDSIRLQRDPQSPVTQ 135

 Score = 26.6 bits (57), Expect(2) = 0.11
 Identities = 22/65 (33%), Positives = 29/65 (43%)
 Frame = -3

Query: 805 PGALLPLLMFRAMRKLCLLLYNAPAFPSHDSHEKNSWLRVKPIRA*RAPIQCRALGHVLP 626
           P   LPLL  RA+  LC+   +  +F +  SH K S   + P  A   P+        LP
Sbjct: 8   PTQALPLL--RALLTLCIAALSTTSFDTTASHHKKSQHPLPPRTASGPPLP------PLP 59

Query: 625 DNPAP 611
             PAP
Sbjct: 60  LIPAP 64

>ref|NP_298137.1| beta-hexosaminidase precursor [Xylella fastidiosa 9a5c]
           gi|11360518|pir||B82755 beta-hexosaminidase precursor
           XF0847 [imported] - Xylella fastidiosa (strain 9a5c)
           gi|9105753|gb|AAF83657.1|AE003924_3 beta-hexosaminidase
           precursor [Xylella fastidiosa 9a5c]
          Length = 841

 Score = 29.3 bits (64), Expect(2) = 0.14
 Identities = 27/79 (34%), Positives = 34/79 (42%), Gaps = 6/79 (7%)
 Frame = -3

Query: 808 RPGALLPLLMFRAMRKLCLLLYNAPAFPSHDSHEKNSWLRVKPIRA*RAPIQCRALGHVL 629
           RP   LPLL  RA+  LC+   +  +F +  SH K S     P+    AP      G  L
Sbjct: 39  RPTQALPLL--RALLTLCIAALSTTSFDTTASHHKKS---QHPLPPRTAP------GPPL 87

Query: 628 PDNPAP------RSHCHAG 590
           P  PAP      + H H G
Sbjct: 88  PLIPAPVQIQRGQGHIHIG 106

 Score = 28.1 bits (61), Expect(2) = 0.14
 Identities = 17/59 (28%), Positives = 25/59 (41%)
 Frame = -1

Query: 576 GPATATTSRPSDTPTGGAAIRLAPALLDAHLAHTHMHARFTPPTTLLRHTQDPRNNPAQ 400
           G  T  +  P+DT    +A  LA  L        H+H   TP    +R  +DP++   Q
Sbjct: 106 GTDTLISIPPNDTDAQHSATYLATLLQHTRNLTLHIHTETTPTPDSIRLQRDPQSPVTQ 164

>gb|AAA75509.1| orf
          Length = 404

 Score = 38.1 bits (87), Expect = 0.17
 Identities = 47/163 (28%), Positives = 58/163 (34%), Gaps = 11/163 (6%)
 Frame = -1

Query: 696 GFVSSLSVHDVHPSNAELLGMCCRITPHLVPIVTRVIRP------AGPATATTSRPSDTP 535
           G V  L   D  P      G+   + P  +P + R  RP      A P     S P+  P
Sbjct: 17  GRVPGLRSGDGRPRRVSRTGIAEDVDP--LPGLPRRARPSVSGYAARPGALAVSGPAGQP 74

Query: 534 TGGAAIRLAPALLDAHLAHTHMHARFT----PPTTLLRHTQDPRNNPAQRRRTVNLEPPT 367
            G    R      DA  A     A  T    PP    RH   P N PA+R    N  P +
Sbjct: 75  PGQGPQRPRRPAKDAQPAPPPRPAGATRTGAPPAEGRRHKAAPHNGPARRSPPCNPAPRS 134

Query: 366 TFLAWHKFQVLVRRAGVQPGQRH*L-RASMATASACLSSHPPP 241
               W       R  G +  +   L  AS+ TAS+ L   PPP
Sbjct: 135 CTHIW-----ATRACGPRAPRSSALGSASVPTASSRLRDGPPP 172



EST assemble image


clone accession position
1 HC030d05_r AV634195 1 494
2 CM045g01_r AV389687 213 731
3 CM062b09_r AV390136 214 823
4 MX020g06_r BP086933 271 647
5 LCL040b08_r AV628328 438 776




Chlamydomonas reinhardtii
Kazusa DNA Research Institute