KCC001400A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001400A_C01 KCC001400A_c01
CATGTACCACGACTCCGCACTCACCACGCGAGCCAAACCCCTGTTCCACGCGCCTCCCCT
TGCTTACGGCCGCCGCCTCCTTCAAAGAATCGGAAGCCCCCCTTCGACAAGTGTTCCCCG
GTCACGGGAAAAGGGGCTGAGCCCCTCCACAGTCTGAGGCCGAACAACCTCATCGCCCGG
ACATAGCCGGGGTCGGTTTCCACAGGCACATAGCCAAACCAGGTGCCTATCTAGCAGTCG
CGATGCCACAGCAGAGCCAACCGCAGCCAGACGCAGCACGGTTGTCAACAGCCGCACTCT
AGTCATGCCGCTACGCATGCCCTGCCAGCCCCACCGCGGACCACTACCTAGACACCAGCC
GGCGAAAACACCCGGAACTCCCGCATCCAACCACGCCACCAGGTGGCCAAGACTCAATGC
CCAGAATTGCACGCTGATAGGCATGAGTATGCGTTCACGCAGACCTCATCCTTGCACGAG
CGGCACGCCACCCAGCAGTTCGCACGCCCTGCCAGCCACTACGCGCGGCCACCACCTCGG
GCGCCCGGTCGCCTGCACCTGCCCCACCCGGCGCATCTTGCGGCGGGTTGCCACCTTGTC
GCCGCACATCAGGCTTTGCCTTCCAACCGCAACTCCCACAGTCCCGCAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001400A_C01 KCC001400A_c01
         (650 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_341933.1| similar to Snf2-related CBP activator protein [...    36  7e-04
ref|XP_323817.1| predicted protein [Neurospora crassa] gi|289181...    36  0.001
ref|XP_323735.1| hypothetical protein [Neurospora crassa] gi|289...    40  0.023
ref|XP_213372.2| similar to macrosialin [Rattus norvegicus]            40  0.023
gb|AAP53837.1| putative cell wall protein [Oryza sativa (japonic...    40  0.030

>ref|XP_341933.1| similar to Snf2-related CBP activator protein [Rattus norvegicus]
          Length = 3576

 Score = 36.2 bits (82), Expect(2) = 7e-04
 Identities = 28/94 (29%), Positives = 38/94 (39%), Gaps = 3/94 (3%)
 Frame = +2

Query: 113  VPRSREKGLSPSTV*GRTTSSPGHSRGRFPQAHSQ--TRCLSSSRDATAEPTAARRSTVV 286
            +P+  E+G          TS   H R +  +A  +  TR     R A AE   A  + V 
Sbjct: 2742 LPQEEEEGPGAGDEMSCATSGVSHRRSKKVKAPERLGTRVSERLRGARAETQGANHTPVT 2801

Query: 287  NSRTLVMPLRMP-CQPHRGPLPRHQPAKTPGTPA 385
            +S         P C P R  +PR +PA  P  PA
Sbjct: 2802 SSHQTCNTFVPPRCSPVRERIPRPRPAPPPAPPA 2835

 Score = 28.5 bits (62), Expect(2) = 7e-04
 Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +3

Query: 492  PAVRTPCQPLRAATTSGARSPAPAP--PGASCGGLPPCRRTSGFAFQP 629
            P V  P  P   A +  A SPAP P  P AS    P    TS  A  P
Sbjct: 2859 PPVLPPVPPPPPAPSPPAPSPAPPPPAPAASVASAPASAITSSLATAP 2906

>ref|XP_323817.1| predicted protein [Neurospora crassa] gi|28918117|gb|EAA27797.1|
           predicted protein [Neurospora crassa]
          Length = 717

 Score = 36.2 bits (82), Expect(2) = 0.001
 Identities = 35/148 (23%), Positives = 61/148 (40%), Gaps = 8/148 (5%)
 Frame = +2

Query: 95  SPPSTSVPRSREKGLSPSTV*GRTTSSPGHSRGRFPQAHSQTRCLSSSRDATAE-PTAAR 271
           S PS     SR   L+P +   R   +P H   R+  +   +   S +R   ++ P++  
Sbjct: 336 SKPSIRSHTSRRLDLNPLSPGSR---APSHHSLRYAASRHSSPPQSPTRSHHSQIPSSPN 392

Query: 272 RSTVVNSRTLVMPL-------RMPCQPHRGPLPRHQPAKTPGTPASNHATRWPRLNAQNC 430
           R +   SR+   P        + P  PH+ P+P     ++ G P S H+ R       + 
Sbjct: 393 RHSRSYSRSHSNPTSRHSSPPQSPTPPHQSPIPHFSGRQSYGRPTSRHSPR-------SR 445

Query: 431 TLIGMSMRSRRPHPCTSGTPPSSSHALP 514
           ++ G  + S  P P  +   P S+ + P
Sbjct: 446 SIAGSGVSSMPPSPTVTDFAPISAISHP 473

 Score = 27.7 bits (60), Expect(2) = 0.001
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 555 APAPPGASCGGLPPCRRTSGF--AFQPQ 632
           +PAPPG S   L P  R+ GF  A  PQ
Sbjct: 476 SPAPPGFSRSSLSPAYRSGGFKAALSPQ 503

>ref|XP_323735.1| hypothetical protein [Neurospora crassa] gi|28918551|gb|EAA28223.1|
           hypothetical protein [Neurospora crassa]
          Length = 684

 Score = 40.4 bits (93), Expect = 0.023
 Identities = 58/202 (28%), Positives = 77/202 (37%), Gaps = 8/202 (3%)
 Frame = +1

Query: 40  PVPRASPCLRPPP-PSKNRKP--PFDKCSPVTGKGAEPLHSLRPNNLIART*PGSVSTGT 210
           P   AS   RPPP P +  +   P DK  P   K   PL S    N I  T P   S   
Sbjct: 70  PTRAASAIDRPPPLPRRTTEQDIPEDKPMPTVNKKPPPLPS---RNSIQHTPPALPSRRP 126

Query: 211 *PNQVPI*QSRCHSRANRSQTQHGCQQPHSSHAATHALPAPPRTTT*TPAGENTRNSRIQ 390
               +P+   R +S  N S   H      SS    H   +  RT+  + +G   R  ++ 
Sbjct: 127 TSASLPVPGVRRNS--NSSDISHLSNVSASSW--NHTASSSARTSITSDSGHPLR--KLP 180

Query: 391 PRHQVAKTQCPELHADRHEYAFTQTSSLHERHATQQFARPASHYARP-----PPRAPGRL 555
           P    AK   P L   R E           R A Q+  R A+  A P     PPR P R 
Sbjct: 181 PAFDQAKL--PPLPPTRREL------EAKAREAQQEQEREANRSAPPAVSQGPPRLPSRS 232

Query: 556 HLPHPAHLAAGCHLVAAHQALP 621
            LP P+ ++     + +  +LP
Sbjct: 233 SLPPPSTVSREPPALPSRPSLP 254

>ref|XP_213372.2| similar to macrosialin [Rattus norvegicus]
          Length = 318

 Score = 40.4 bits (93), Expect = 0.023
 Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
 Frame = +2

Query: 245 ATAEPTAARRSTVVNSRTLVMPLRMPCQPHRGPLPRHQPAKT---PGTPASNHATRWPRL 415
           +TA PT   R T  + R      R     HR     H+P  T   P T +  +AT  P  
Sbjct: 31  STASPTTTHRPTTTSHRPTTTSHRPTTTSHRPTTTSHRPTTTSHRPTTTSHGNATVSPTT 90

Query: 416 NAQNCTLIGMSMRSRRPHPCTSGTPPSSSHALPATT 523
           N+   + +G       PHP   G PP S    P++T
Sbjct: 91  NSPGFSTVG-------PHP---GPPPPSPSPSPSST 116

>gb|AAP53837.1| putative cell wall protein [Oryza sativa (japonica cultivar-group)]
          Length = 764

 Score = 40.0 bits (92), Expect = 0.030
 Identities = 56/235 (23%), Positives = 82/235 (34%), Gaps = 21/235 (8%)
 Frame = +1

Query: 1   HVPRLRTHHASQTPVPRASPC------LRPPPPSKNRKPPFDKCS-PVTGKGAEPLHSLR 159
           +VP +     S+ P P ASP         P  PS ++ PP  + +    GK  E     R
Sbjct: 117 YVPAVALLFPSRRPPPAASPSSPERRPAAPSSPSASQPPPLPRSALRFAGKPPET-RPRR 175

Query: 160 PNNLIART*PGSVSTGT*PNQVPI*QSRCHSRANRSQTQHGC----QQPHSSHAATHALP 327
            N+ +A T P SV+    P + P   S   +  +R   +         P +S +A+  L 
Sbjct: 176 QNSGVAATVPPSVAPVAAPGRRPTSPSPPSASPHRPPPRPALGFAGTSPRTSPSASPELF 235

Query: 328 APPRTTT*TPAGEN---------TRNSRIQPRHQVAKTQCPELHADRHEYAFTQTSSLHE 480
             P   T  P G           T +S   P        C  LH                
Sbjct: 236 GRPSLLTRAPVGRTSTTFGIAAATSSSASLPLRPNTAGVCRRLHRS-------------- 281

Query: 481 RHATQQFARPASHYARPPPRAPGRLHLP-HPAHLAAGCHLVAAHQALPSNRNSHS 642
                  + PA   A PPP +  +  +P HP   A  C L ++    P + +S S
Sbjct: 282 -------SSPARRLAAPPPSSASQRRVPRHPRLRAGRCRLPSSSPRRPRSSSSSS 329

 Score = 32.7 bits (73), Expect = 4.8
 Identities = 43/157 (27%), Positives = 56/157 (35%), Gaps = 6/157 (3%)
 Frame = +2

Query: 50  APPLAYGRRLLQRIGSPPSTSVPRSREKGLSPSTV*GRTTSSPGHSRGRFPQAHSQTRCL 229
           AP  A GRR       P S S P +      P    G   +SP  S    P+   +   L
Sbjct: 189 APVAAPGRR-------PTSPSPPSASPHRPPPRPALGFAGTSPRTSPSASPELFGRPSLL 241

Query: 230 SSSRDATAEPTAARRSTVVNSRTLVMPLRMPC-----QPHRGPLPRHQPAKTPGTPASNH 394
           + +       T    +   +S +L  PLR        + HR   P  + A  P + AS  
Sbjct: 242 TRAPVGRTSTTFGIAAATSSSASL--PLRPNTAGVCRRLHRSSSPARRLAAPPPSSASQR 299

Query: 395 AT-RWPRLNAQNCTLIGMSMRSRRPHPCTSGTPPSSS 502
              R PRL A  C L   S R  R    +S     SS
Sbjct: 300 RVPRHPRLRAGRCRLPSSSPRRPRSSSSSSSRRSRSS 336



EST assemble image


clone accession position
1 MX225e08_r BP090552 1 281
2 CM045b06_r AV389675 99 650




Chlamydomonas reinhardtii
Kazusa DNA Research Institute