KCC001398A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001398A_C01 KCC001398A_c01
gcacgaggttgggtgtttgtttgtTTCTATATGTGTGCACGAGGCCCGACAGCTCAACAT
GCTTAACTGGCGCGGCATGTCAGGGACCGTACTGTGCGGAATGAGCGTCGCGAGTAACGT
TCAAGCGCACTTCAGTCCACCAGTTCAAGGTCATTTTTTAGTTCTGGGGACGACGTTGCT
CAAGAGGCACTATTTGCAAGGGCGCTTGACTCAATCGAGAGTTGGTCGTTCACGCGGGAT
GTAGAGAACATCGTGTACGGTATCCCATACACCCTATTTTGCGTATGTTACGGATTCGTC
GGGCGTCAGCATGGGATCAAACGAAGGAGTAGGGATCCCATGCACCTATCCTATTACGGC
ACAAGAGCGCGCTATGAGTCAAGTAGTTTGCGGTGGAGCTGGTCGTGTTACAGCGGTATT
GGTATGACGAGGCAAGGGCCCTGCTATTGCAATCACAGTTCCTGGGTCGGAGTACATACA
TACGTCACTGTCTTGTGAGAGATGGCCGCCGTTTCGGCATTTGCCTGGGTGTTTTTGGGT
GCACGAGCAGACGCCGTGTTTGGTGTTGTGGTCGGTTGGGTTGGTGCTGCGTCGCTGGCT
GTGCTAGCCTGTGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001398A_C01 KCC001398A_c01
         (615 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A37232 mucin, tracheal (AMN-22) - human (fragment) gi|85725...    28  0.52
ref|NP_647965.1| CG4835-PA [Drosophila melanogaster] gi|23094138...    34  1.9
ref|ZP_00139656.1| COG1012: NAD-dependent aldehyde dehydrogenase...    33  2.5
dbj|BAA99512.1| P0489A01.2 [Oryza sativa (japonica cultivar-group)]    33  2.5
gb|AAK92612.1|AC078944_23 Putative cytochrome P-450 like protein...    33  2.5

>pir||A37232 mucin, tracheal (AMN-22) - human (fragment)
           gi|8572538|gb|AAA63229.2| mucin [Homo sapiens]
          Length = 294

 Score = 27.7 bits (60), Expect(2) = 0.52
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = -1

Query: 465 PGTVIAIAGPLPRHTNTAVTRPAPPQTT*LIARSCAVIG*VHGIPTP--SFDPMLTPDES 292
           P T      P P  T+T  T P P  TT  +  +    G     PTP  +   M+TP  +
Sbjct: 190 PITTTTTVTPTPTPTSTQSTTPTPITTTNTVTPTPTPTGTQTPTPTPITTTTTMVTPTPT 249

Query: 291 VT 286
           +T
Sbjct: 250 IT 251

 Score = 26.9 bits (58), Expect(2) = 0.52
 Identities = 15/40 (37%), Positives = 16/40 (39%)
 Frame = -2

Query: 584 PTQPTTTPNTASARAPKNTQANAETAAISHKTVTYVCTPT 465
           PT  TTT        P  TQ    T   +  TVT   TPT
Sbjct: 119 PTPITTTTTVTPTPTPTGTQTPTSTPITTTTTVTPTPTPT 158

>ref|NP_647965.1| CG4835-PA [Drosophila melanogaster] gi|23094138|gb|AAF50778.2|
            CG4835-PA [Drosophila melanogaster]
          Length = 1175

 Score = 33.9 bits (76), Expect = 1.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 605  STASDAAPTQPTTTPNTASARAPKNTQANAETAAISHKTVTYVCTPT 465
            +T S    T PTTT  T  +  PK T   + T   + ++ T V TPT
Sbjct: 1062 TTESTTISTTPTTTEPTTVSTTPKTTTTESTTVTTTTESTTTVSTPT 1108

>ref|ZP_00139656.1| COG1012: NAD-dependent aldehyde dehydrogenases [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 637

 Score = 33.5 bits (75), Expect = 2.5
 Identities = 22/74 (29%), Positives = 33/74 (43%)
 Frame = -1

Query: 612 TG*HSQRRSTNPTDHNTKHGVCSCTQKHPGKCRNGGHLSQDSDVCMYSDPGTVIAIAGPL 433
           +G  ++RR T PT        C+   +H      GG  +Q+S   +Y+ PGT  A+    
Sbjct: 94  SGKRARRRVTRPTLRRRPRRPCTSPPRH------GGTTTQESFAMIYAAPGTPGAVVTFK 147

Query: 432 PRHTNTAVTRPAPP 391
           PR+ N       PP
Sbjct: 148 PRYGNYIGGEFVPP 161

>dbj|BAA99512.1| P0489A01.2 [Oryza sativa (japonica cultivar-group)]
          Length = 1212

 Score = 33.5 bits (75), Expect = 2.5
 Identities = 21/51 (41%), Positives = 23/51 (44%), Gaps = 3/51 (5%)
 Frame = -2

Query: 614 AQASTASDAAPT---QPTTTPNTASARAPKNTQANAETAAISHKTVTYVCT 471
           A AST  D APT    PT TP  A   AP      A+  A  +K   Y CT
Sbjct: 753 APASTPQDPAPTPPRAPTPTPPQAPLPAPSKATKKAKVDAAKNKDPGYDCT 803

>gb|AAK92612.1|AC078944_23 Putative cytochrome P-450 like protein [Oryza sativa]
           gi|31430347|gb|AAP52273.1| putative cytochrome P-450
           like protein [Oryza sativa (japonica cultivar-group)]
          Length = 1163

 Score = 33.5 bits (75), Expect = 2.5
 Identities = 21/51 (41%), Positives = 23/51 (44%), Gaps = 3/51 (5%)
 Frame = -2

Query: 614 AQASTASDAAPT---QPTTTPNTASARAPKNTQANAETAAISHKTVTYVCT 471
           A AST  D APT    PT TP  A   AP      A+  A  +K   Y CT
Sbjct: 567 APASTPQDPAPTPPRAPTPTPPQAPLPAPSKATKKAKVDAAKNKDPGYDCT 617



EST assemble image


clone accession position
1 CM045a03_r AV389719 1 527
2 CM066g02_r AV390847 25 615




Chlamydomonas reinhardtii
Kazusa DNA Research Institute