>KCC001393A_C01 KCC001393A_c01
caaATACTAGTTCACAGGGATTGGGCACCTACCGTAGCCCTGATTTGAAGTTCTAGAGTT
CCGCGGGCGGGATGCCGTGCCCGTTTGGTTTCACCGCTGAGGACGGTGAATATGATTTGG
GGGATATCACACCAACGGAGGATGAGGAGGAGGAGCAGGTAGCGGAGGGCACCGGTTCGG
GCAACGAGAAGAAGGACAAGAAGTCCAAAAAGTCCAAGAAAAAGGACAGCGCTGATGAGC
CAGTGGAGGAAATAAAGCCGTCTGGCGGAGCCAAGAAGAAGAAGGACAAGAAGAAGGCTC
CCGAGGAGCTGGAATTTGATTTCGAGAAGGACCCTGTGTCCTGGTTCTACCAGAACCAAA
TCAAGAGTGAGGCAGAATTCGCCAAGAAGAAGGATTCTCTCAGGGCCGAGGCCCGCAAGC
GGCTGGACGCCATCATGTCCAGAAAGGACAAGCACCTGGAGTGGCCGTCCGACTCGGACC
TGGACGACCTGTCCATCCGCAGCAGCGAGCTGTCCGACCTGGACAGCGACGTGGACTCGC
TGGGCTCCATCATCAGCTGCGCCAACTCGTGGATTGAGGACGCCCGGTACGGCACGCCCG
CGGAGAAGACGCTGCAGTGGACCGCGTACACGGCCCTGGCGACGAGCGGCTACTCGCTCT
GGCTGACGGTGCAGGCGGTGAACACCACCCGCAAGGTCGTTGGCGTGCTGGCGAACAGCG
TGTGGCCCAACGCCGCCTTCGCGGGCGCCGCGCTGCTGGGCGCCAGCTTCATCGGGCTGC
TGCTAGCGGTGCGCTACCGCTCCAAGCGCATCCTGCTGCTCAGCCAGGCGGCGTGCCTGT
TCCTGTACAGCGCCTTCCTGGTCATCACGTGCGGCGTGGTGTTCCAGCCCACCGTGGTGG
ACGCCAAGCTCCGGGACGTGGCGTGTGTCCGGTACAGCAACACGGACCAGGGCTCGCGGC
TGTGCAAGATGATTCCCGGCATCGAGCGCGACCTGGCGGAGCAGATGTACAGCCTCATGT
GGGCCGCCGGCCTCGCGGCCATCACCGCCATGGCCACCCTCATCACAAGCATCTGGTACC
TGTACGAGCTGGCCTACATTGAGAAGAAGGCCATCAAGCACAAGCGCCGCCACAAGCGCC
GGAAGCACTCCATCCCCTGGGAGAAGACAAGATTGTGGGCCCCGTCA

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001393A_C01 KCC001393A_c01
         (1187 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_064121.1| pr5 [Rat cytomegalovirus] gi|9800242|gb|AAF9911...    72  2e-11
ref|XP_220207.2| similar to splicing coactivator subunit SRm300;...    67  6e-10
dbj|BAC65530.1| mKIAA0324 protein [Mus musculus]                       66  1e-09
ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]                  66  1e-09
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Ho...    65  2e-09

>ref|NP_064121.1| pr5 [Rat cytomegalovirus] gi|9800242|gb|AAF99116.1|AF232689_7 pr5
            [rat cytomegalovirus Maastricht]
          Length = 629

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 85/283 (30%), Positives = 115/283 (40%), Gaps = 11/283 (3%)
 Frame = +1

Query: 337  CPGSTRTKSRVRQNSPRRRILSGPRPASGWTPSCPERTSTWSGRPTRTWT---TCPSAAA 507
            CP    ++      +P RR  +GPR AS  T     R+++    P   WT   +C ++ +
Sbjct: 390  CPAPGASRPIPTDAAPPRRP-AGPRGASSSTAPGTGRSAS----PPACWTATASCWTSPS 444

Query: 508  SCPTWTATWTRWAPSSAAPTRGLRTPGTARPRRRRCSGPRTRPWRRAATRSG*RCRR*TP 687
            S PT TAT TR A  +   T    + GTA   R                         T 
Sbjct: 445  SGPTSTATRTRTAGGTGRATAAT-SDGTAASSRT------------------------TS 479

Query: 688  PARSLACWRTACGPTP--PSRAPRCWAPASSGCC*RCATAPSASCC--SARRRACSCTAP 855
            PAR      T+  P     +R P  W PAS+     C T  S+S C  +AR R  S   P
Sbjct: 480  PARPCGSPATSRAPASGGSARGPTTW-PASTAAS--CTTRRSSSTCRGAARPRDGSSPTP 536

Query: 856  SWSSRAAWCSSPPWWTPSSG---TWR-VSGTATRTRARGCAR*FPASSATWRSRCTASCG 1023
            + S R  W  SPPW  P S    T R + G++  + +R  A    +SS TW  R T +  
Sbjct: 537  ARSGRCPW--SPPWPRPGSAAASTGRGIRGSSPSSSSRSSATGTDSSSGTWTGRPTGTAS 594

Query: 1024 PPASRPSPPWPPSSQASGTCTSWPTLRRRPSSTSAATSAGSTP 1152
              ASRP+            CTS P         ++A+S G TP
Sbjct: 595  RSASRPA-----------RCTSTP--------RASASSGGGTP 618

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 73/261 (27%), Positives = 85/261 (31%)
 Frame = -3

Query: 1167 SSPRGWSASGACGGACA*WPSSQCRPARTGTRCL**GWPWR*WPRGRRPT*GCTSAPPGR 988
            S P  W+A+ +C      W S    P  T TR                     T+   GR
Sbjct: 428  SPPACWTATASC------WTSPSSGPTSTATRTR-------------------TAGGTGR 462

Query: 987  ARCRESSCTAASPGPCCCTGHTPRPGAWRPPRWAGTPRRT**PGRRCTGTGTPPG*AAGC 808
            A    S  TAAS            P   R P   G+ R           T  P   AA C
Sbjct: 463  ATAATSDGTAASSRTTSPARPCGSPATSRAPASGGSARGP---------TTWPASTAASC 513

Query: 807  AWSGSAPLAAAR*SWRPAARRPRRRRWATRCSPARQRPCGWCSPPAPSARASSRSSPGPC 628
                S+            A RPR     T   PAR   C W SPP P         PG  
Sbjct: 514  TTRRSSSTCRG-------AARPRDGSSPT---PARSGRCPW-SPPWPR--------PG-- 552

Query: 627  TRSTAASSPRACRTGRPQSTSWRS**WSPASPRRCPGRTARCCGWTGRPGPSRTATPGAC 448
              S AAS+ R  R   P S+S  S            G  +    WTGR  P+ TA+  A 
Sbjct: 553  --SAAASTGRGIRGSSPSSSSRSS----------ATGTDSSSGTWTGR--PTGTASRSAS 598

Query: 447  PFWT*WRPAACGPRP*ENPSS 385
                  RPA C   P  + SS
Sbjct: 599  ------RPARCTSTPRASASS 613

 Score = 42.7 bits (99), Expect = 0.012
 Identities = 57/211 (27%), Positives = 77/211 (36%), Gaps = 4/211 (1%)
 Frame = +1

Query: 547  PSSAAPTRGLRTPGTARPRRRRCSGPRTRPWRRAATRSG*RCRR*TPPARSLACWRTACG 726
            P  A        PG +RP     + PR     R A+ S       T P    +    AC 
Sbjct: 381  PRPAVAEEACPAPGASRPIPTDAAPPRRPAGPRGASSS-------TAPGTGRSASPPACW 433

Query: 727  PTPPSRAPRCWAPASSGCC*RCATAPSASCCSARRRACSCTAPSWSSRAAWCS-SPPWWT 903
                S    CW   SSG     +TA          RA + T+   ++ +   S + P  +
Sbjct: 434  TATAS----CWTSPSSG---PTSTATRTRTAGGTGRATAATSDGTAASSRTTSPARPCGS 486

Query: 904  PSSGTWRVSGTATRTRARGCAR*FPASSATWRSRCTASCGPPASRPSPPWPPSSQASGTC 1083
            P++     SG + R      A    AS  T RS  T      A+RP     P+   SG C
Sbjct: 487  PATSRAPASGGSARGPTTWPAS-TAASCTTRRSSSTCR---GAARPRDGSSPTPARSGRC 542

Query: 1084 TSWPTLRRRPSSTSAATS---AGSTPSPGRR 1167
              W     RP S +A+T     GS+PS   R
Sbjct: 543  -PWSPPWPRPGSAAASTGRGIRGSSPSSSSR 572

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 49/192 (25%), Positives = 68/192 (34%), Gaps = 7/192 (3%)
 Frame = +1

Query: 181 ATRRRTRSPKSPRKRTALMSQWRK*S-RLAEPRR---RRTRRRLPRSWNLISRRTLCPGS 348
           +T  RTR+     + TA  S     S R   P R        R P S       T  P S
Sbjct: 449 STATRTRTAGGTGRATAATSDGTAASSRTTSPARPCGSPATSRAPASGGSARGPTTWPAS 508

Query: 349 TRTKSRVRQNSPRRRILSGPRPASGWTPSCPERTSTWSGRPTRTWTTCPSAAASCPTWTA 528
           T      R++S   R  + PR  S  TP+        SGR              CP W+ 
Sbjct: 509 TAASCTTRRSSSTCRGAARPRDGSSPTPAR-------SGR--------------CP-WSP 546

Query: 529 TWTRWAPSSAAPTRGLRTPGTARPRRRRCSGPRTRPWRRAATRSG*RCRR*TPPARSLAC 708
            W R   ++A+  RG+R    +   R   +G  +         +G   R  + PAR  + 
Sbjct: 547 PWPRPGSAAASTGRGIRGSSPSSSSRSSATGTDSSSGTWTGRPTGTASRSASRPARCTST 606

Query: 709 WRTAC---GPTP 735
            R +    G TP
Sbjct: 607 PRASASSGGGTP 618

>ref|XP_220207.2| similar to splicing coactivator subunit SRm300; RNA binding protein;
            AT-rich element binding factor [Rattus norvegicus]
          Length = 1971

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 116/400 (29%), Positives = 165/400 (41%), Gaps = 47/400 (11%)
 Frame = +1

Query: 127  SHQRRMRRRSR*RRAPVRATRRRTRSPKSPRKRTALMSQWRK*S----RLAEPRRR---R 285
            S + R R   R RR+P  ++   T   +S R+R ++ S   K +    R   P+ R   R
Sbjct: 927  SPETRSRTPPRRRRSPSVSSPEPTEKSRSSRRRRSVSSPRNKTTSRRGRSPSPKPRGLQR 986

Query: 286  TRRRLPRSWNLISRRTLCPGSTRTKSRVRQNS-PRRRILSGPRPASGWTPSCPER--TST 456
            +R R  R     +RR    GS+++ SR RQ S  R R+    R  SG+    P R  +S 
Sbjct: 987  SRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSR 1046

Query: 457  WSGRPTRTWTTCP------SAAASCPT-WTATWTRWAPSSAAPTRGLRTPGTARPRRRRC 615
             S R  R  +  P      S + + P  W  + +R +P++   +R  RTP  +R R R  
Sbjct: 1047 TSSRRRRGRSRTPLTSRKRSRSRTSPAPWKRSRSRASPATHRRSRS-RTPLISRRRSRSR 1105

Query: 616  SGP----------RTRPWRRAATRSG*RCRR*TPP-------ARSLACWRTACGPTPP-- 738
            + P          R R   RA+  S  R R  TPP       +R+    R +   TPP  
Sbjct: 1106 TSPVSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVT 1165

Query: 739  SRAPRCWAPASSGCC*RCATAPSASCCSARRRACSCTAPSWSSRAAWCSSPPWWTPSSGT 918
             R  R  +P  +    R  T+P       RRR+ S T+P    R+   +SP     S   
Sbjct: 1166 RRRSRSRSPPVTRRRSRSRTSP-----VTRRRSRSRTSPVTRRRSRSRTSPVTRRRSR-- 1218

Query: 919  WRVSGTATRTRARGCAR*FPASSATWRSRC-------TASCGPPA----SRPSPPWPPSS 1065
               S T+  TR R  +R  PA     RSR        + S  P A    SR   P     
Sbjct: 1219 ---SRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRAARG 1275

Query: 1066 QASGTCTSWPTLRRRPSSTSAATSAGSTPSPGRRQDCGPR 1185
            + S T  S P +RRR +S S++  + S   P  R   G R
Sbjct: 1276 KRSLT-RSPPAIRRRSASGSSSDRSRSATPPATRNHSGSR 1314

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 80/262 (30%), Positives = 110/262 (41%), Gaps = 7/262 (2%)
 Frame = +1

Query: 145  RRRSR*RRAPVRATRRRTRSPKSPRKRTALMSQWRK*SRLAEPRRRRTRRRLPRSWNLIS 324
            RRRSR R +PV   R R+ + +  R R + +S+ R  SR     RRR+R R P +     
Sbjct: 1099 RRRSRSRTSPVSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSR 1158

Query: 325  RRTLCPGSTRTKSRVRQNSPRRRILSGPRPASGWTPSCPERTSTWSGRPTRTWTTCPSAA 504
             RT  P  TR +SR R     RR                 RTS  + R +R+ T+  +  
Sbjct: 1159 SRT--PPVTRRRSRSRSPPVTRR-------------RSRSRTSPVTRRRSRSRTSPVTRR 1203

Query: 505  ASCPTWTATWTRWAPSSAAPTRGLRTPGTARPRRRRCSGPRT--RPWRRAATRSG*RCRR 678
             S    +    R + S  +P    R+     P  RR S  RT   P +R+ +RS    RR
Sbjct: 1204 RSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRR 1263

Query: 679  *TPPARSLACWRTACGPTPPSRAP----RCWAPASSGCC*RCATAPSASCCSARRRACSC 846
                +RS    R A G    +R+P    R  A  SS    R AT P     + R  + S 
Sbjct: 1264 ---RSRSRTP-RAARGKRSLTRSPPAIRRRSASGSSSDRSRSATPP-----ATRNHSGSR 1314

Query: 847  TAP-SWSSRAAWCSSPPWWTPS 909
            T P + SS    C S P  +P+
Sbjct: 1315 TPPVALSSSRMSCFSRPSMSPT 1336

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 108/398 (27%), Positives = 147/398 (36%), Gaps = 19/398 (4%)
 Frame = +1

Query: 49   SSRVPRAGCRARLVSPLRTVNMIWGISHQRRMRRRSR*RRAPVRATRRRTRSPKSPRKRT 228
            S R  R+  R+R+    R      G  +  R   R    R   R  R R+R+P + RKR+
Sbjct: 1012 SRRRQRSRSRSRVTRRRRG-----GSGYHSRSPTRQESSRTSSRRRRGRSRTPLTSRKRS 1066

Query: 229  ALMSQ---W-RK*SRLAEPRRRRTRRRLPRSWNLISRRTLCPGSTRTKSRVRQNSPRRRI 396
               +    W R  SR +    RR+R R P    LISRR     ++    R  ++  RRR 
Sbjct: 1067 RSRTSPAPWKRSRSRASPATHRRSRSRTP----LISRRRSRSRTSPVSRRRSRSVNRRRS 1122

Query: 397  LSGPRPAS-----GWTPSCPERTSTWSGRPTRTWTTCPSAAASCPTWTATWTRWAPSSAA 561
             S   P S       TP    R S      +RT TT   + +  P  T   +R   S + 
Sbjct: 1123 RSRASPVSRRRSRSRTPPVTRRRSR-----SRTPTTRRRSRSRTPPVTRRRSR---SRSP 1174

Query: 562  PTRGLRTPGTARPRRRRCSGPRTRP--WRRAATRSG*RCRR*TPPARSLACWRTACGPTP 735
            P    R+     P  RR S  RT P   RR+ +R+    RR +    S    R +   TP
Sbjct: 1175 PVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTP 1234

Query: 736  PS--RAPRCWAPASSGCC*RCATAPSASCCSARRRACSCTAPSWSSRAAWCSSPP----- 894
            P+  R  R   P           + S S  + RRR+ S T  +   + +   SPP     
Sbjct: 1235 PAIRRRSRSRTPLLPR-----KRSRSRSPLAIRRRSRSRTPRAARGKRSLTRSPPAIRRR 1289

Query: 895  WWTPSSGTWRVSGTATRTRARGCAR*FPASSATWRSRCTASCGPPASRPSPPWPPSSQAS 1074
              + SS     S T   TR    +R  P + ++ R  C        SRPS    P  +  
Sbjct: 1290 SASGSSSDRSRSATPPATRNHSGSRTPPVALSSSRMSC-------FSRPSMSPTPLDRCR 1342

Query: 1075 GTCTSWPT-LRRRPSSTSAATSAGSTPSPGRRQDCGPR 1185
                  P    R P S    T       PG R    PR
Sbjct: 1343 SPGMLEPLGSARTPMSVLQQTGGSMMDGPGPRIPDHPR 1380

 Score = 37.4 bits (85), Expect = 0.52
 Identities = 34/100 (34%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
 Frame = -3

Query: 762  RPAARRPR-RRRWATRCSPARQRPCGWCSPPAPSARASSRSSPGPCTRSTAASSPRACRT 586
            R  +R P  RRR  +R  P  +R     SPP    R+ SR+SP    RS + +SP   R 
Sbjct: 1145 RSRSRTPTTRRRSRSRTPPVTRRRSRSRSPPVTRRRSRSRTSPVTRRRSRSRTSPVTRRR 1204

Query: 585  GRPQSTSWRS**WSPASPRRCPGRTARCCGWTGRPGPSRT 466
             R ++        SP + RR   RT+     T R   SRT
Sbjct: 1205 SRSRT--------SPVTRRRSRSRTSPV---TRRRSRSRT 1233

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 32/99 (32%), Positives = 42/99 (42%)
 Frame = -3

Query: 759  PAARRPRRRRWATRCSPARQRPCGWCSPPAPSARASSRSSPGPCTRSTAASSPRACRTGR 580
            P  RR  R R  T    +R R     +PP    R+ SRS P    RS + +SP   R  R
Sbjct: 1140 PVTRRRSRSRTPTTRRRSRSR-----TPPVTRRRSRSRSPPVTRRRSRSRTSPVTRRRSR 1194

Query: 579  PQSTSWRS**WSPASPRRCPGRTARCCGWTGRPGPSRTA 463
             ++        SP + RR   RT+     T R   SRT+
Sbjct: 1195 SRT--------SPVTRRRSRSRTSPV---TRRRSRSRTS 1222

>dbj|BAC65530.1| mKIAA0324 protein [Mus musculus]
          Length = 1754

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 115/398 (28%), Positives = 161/398 (39%), Gaps = 45/398 (11%)
 Frame = +1

Query: 127  SHQRRMRRRSR*RRAPVRATRRRTRSPKSPRKRTALMSQWRK*S----RLAEPRRR---R 285
            S + R R   R RR+P  ++   T   +S R+R ++ S   K +    R   P+ R   R
Sbjct: 720  SPEIRSRTPPRRRRSPSVSSPEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQR 779

Query: 286  TRRRLPRSWNLISRRTLCPGSTRTKSRVRQNS-PRRRILSGPRPASGWTPSCPER--TST 456
            +R R  R     +RR    GS+++ SR RQ S  R R+    R  SG+    P R  +S 
Sbjct: 780  SRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSR 839

Query: 457  WSGRPTRTWTTCP------SAAASCPT-WTATWTRWAPSSAAPTRGLRTPGTARPRRRRC 615
             S R  R  +  P      S + + P  W  + +R +P++   +R  RTP  +R R R  
Sbjct: 840  TSSRRRRGRSRTPLTSRKRSRSRTSPAPWKRSRSRASPATHRRSRS-RTPLISRRRSRSR 898

Query: 616  SGP----------RTRPWRRAATRSG*RCRR*TPPARSLACWRTACGPTPPSRAPRCWAP 765
            + P          R R   RA+  S  R R  TPP       R +   TP  R  R   P
Sbjct: 899  TSPVSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTR----RRSRSRTPTRRRSRSRTP 954

Query: 766  ASSGCC*RCATAP-------SASCCSARRRACSCTAPSWSSRAAWCSSPPWWTPSSGTWR 924
              +    R  T P       S +    RRR+ S T+P    R+   +SP     S     
Sbjct: 955  PVTRRRSRSRTPPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSR---- 1010

Query: 925  VSGTATRTRARGCAR*FPASSATWRSRC-------TASCGPPA----SRPSPPWPPSSQA 1071
             S T+  TR R  +R  PA     RSR        + S  P A    SR   P     + 
Sbjct: 1011 -SRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRAARGKR 1069

Query: 1072 SGTCTSWPTLRRRPSSTSAATSAGSTPSPGRRQDCGPR 1185
            S T  S P +RRR +S S++  + S   P  R   G R
Sbjct: 1070 SLT-RSPPAIRRRSASGSSSDRSRSATPPATRNHSGSR 1106

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 109/397 (27%), Positives = 150/397 (37%), Gaps = 18/397 (4%)
 Frame = +1

Query: 49   SSRVPRAGCRARLVSPLRTVNMIWGISHQRRMRRRSR*RRAPVRATRRRTRSPKSPRKRT 228
            S R  R+  R+R+    R      G  +  R   R    R   R  R R+R+P + RKR+
Sbjct: 805  SRRRQRSRSRSRVTRRRRG-----GSGYHSRSPTRQESSRTSSRRRRGRSRTPLTSRKRS 859

Query: 229  ALMSQ---W-RK*SRLAEPRRRRTRRRLPRSWNLISRRTLCPGSTRTKSRVRQNSPRRRI 396
               +    W R  SR +    RR+R R P    LISRR     ++    R  ++  RRR 
Sbjct: 860  RSRTSPAPWKRSRSRASPATHRRSRSRTP----LISRRRSRSRTSPVSRRRSRSVNRRRS 915

Query: 397  LSGPRPAS-----GWTPSCPERTSTWSGRPTRTWTTCPSAAASCP-TWTATWTRWAPSSA 558
             S   P S       TP    R S      +RT T   S + + P T   + +R  P + 
Sbjct: 916  RSRASPVSRRRSRSRTPPVTRRRSR-----SRTPTRRRSRSRTPPVTRRRSRSRTPPVTR 970

Query: 559  APTRGLRTPGTARPRRRRCSGPRTRPWRRAATRSG*RCRR*TPPARSLACWRTACGPTPP 738
              +R   +P T R  R R S P TR  RR+ +R+    RR +    S    R +   TPP
Sbjct: 971  RRSRSRTSPVTRRRSRSRTS-PVTR--RRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPP 1027

Query: 739  S--RAPRCWAPASSGCC*RCATAPSASCCSARRRACSCTAPSWSSRAAWCSSPP-----W 897
            +  R  R   P           + S S  + RRR+ S T  +   + +   SPP      
Sbjct: 1028 AIRRRSRSRTPLLPR-----KRSRSRSPLAIRRRSRSRTPRAARGKRSLTRSPPAIRRRS 1082

Query: 898  WTPSSGTWRVSGTATRTRARGCAR*FPASSATWRSRCTASCGPPASRPSPPWPPSSQASG 1077
             + SS     S T   TR    +R  P + ++ R  C        SRPS    P  +   
Sbjct: 1083 ASGSSSDRSRSATPPATRNHSGSRTPPVALSSSRMSC-------FSRPSMSPTPLDRCRS 1135

Query: 1078 TCTSWPT-LRRRPSSTSAATSAGSTPSPGRRQDCGPR 1185
                 P    R P S    T       PG R    PR
Sbjct: 1136 PGMLEPLGSARTPMSVLQQTGGSMMDGPGPRIPDHPR 1172

 Score = 40.8 bits (94), Expect = 0.047
 Identities = 33/99 (33%), Positives = 45/99 (45%)
 Frame = -3

Query: 762  RPAARRPRRRRWATRCSPARQRPCGWCSPPAPSARASSRSSPGPCTRSTAASSPRACRTG 583
            R  +R P RRR  +R  P  +R     +PP    R+ SR+SP    RS + +SP   R  
Sbjct: 938  RSRSRTPTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRS 997

Query: 582  RPQSTSWRS**WSPASPRRCPGRTARCCGWTGRPGPSRT 466
            R ++        SP + RR   RT+     T R   SRT
Sbjct: 998  RSRT--------SPVTRRRSRSRTSPV---TRRRSRSRT 1025

>ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]
          Length = 2607

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 115/398 (28%), Positives = 161/398 (39%), Gaps = 45/398 (11%)
 Frame = +1

Query: 127  SHQRRMRRRSR*RRAPVRATRRRTRSPKSPRKRTALMSQWRK*S----RLAEPRRR---R 285
            S + R R   R RR+P  ++   T   +S R+R ++ S   K +    R   P+ R   R
Sbjct: 1573 SPEIRSRTPPRRRRSPSVSSPEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQR 1632

Query: 286  TRRRLPRSWNLISRRTLCPGSTRTKSRVRQNS-PRRRILSGPRPASGWTPSCPER--TST 456
            +R R  R     +RR    GS+++ SR RQ S  R R+    R  SG+    P R  +S 
Sbjct: 1633 SRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSR 1692

Query: 457  WSGRPTRTWTTCP------SAAASCPT-WTATWTRWAPSSAAPTRGLRTPGTARPRRRRC 615
             S R  R  +  P      S + + P  W  + +R +P++   +R  RTP  +R R R  
Sbjct: 1693 TSSRRRRGRSRTPLTSRKRSRSRTSPAPWKRSRSRASPATHRRSRS-RTPLISRRRSRSR 1751

Query: 616  SGP----------RTRPWRRAATRSG*RCRR*TPPARSLACWRTACGPTPPSRAPRCWAP 765
            + P          R R   RA+  S  R R  TPP       R +   TP  R  R   P
Sbjct: 1752 TSPVSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTR----RRSRSRTPTRRRSRSRTP 1807

Query: 766  ASSGCC*RCATAP-------SASCCSARRRACSCTAPSWSSRAAWCSSPPWWTPSSGTWR 924
              +    R  T P       S +    RRR+ S T+P    R+   +SP     S     
Sbjct: 1808 PVTRRRSRSRTPPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSR---- 1863

Query: 925  VSGTATRTRARGCAR*FPASSATWRSRC-------TASCGPPA----SRPSPPWPPSSQA 1071
             S T+  TR R  +R  PA     RSR        + S  P A    SR   P     + 
Sbjct: 1864 -SRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRAARGKR 1922

Query: 1072 SGTCTSWPTLRRRPSSTSAATSAGSTPSPGRRQDCGPR 1185
            S T  S P +RRR +S S++  + S   P  R   G R
Sbjct: 1923 SLT-RSPPAIRRRSASGSSSDRSRSATPPATRNHSGSR 1959

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 105/405 (25%), Positives = 146/405 (35%), Gaps = 34/405 (8%)
 Frame = +1

Query: 52   SRVPRAGCRARLVSPLRTVNMIWGISHQRRMRRRSR*RRAPVRATRRRTRSPKSPRKRTA 231
            SR P+   R+R  SP R      G S  R  +RR R R A  R  R  +RSP +  +  +
Sbjct: 426  SRSPQRRGRSR--SPQRP-----GWSRSRNTQRRGRSRSA--RRGRSHSRSPATRGRSRS 476

Query: 232  LMSQWRK*SRLAEPRRRRTRRRLPRSWNLISRRTLCPGSTRTKSRVRQNS-PRRRILSGP 408
                 R  SR   P RRR+R R P      SR     G +R+++  R+ S  R  +    
Sbjct: 477  RTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRS 536

Query: 409  RPASGWTPSCPERTSTWSGRPTRTWTTCPSAAASCPTWTATWTRWAPSSAAPTR----GL 576
            R  S    S   R+ T + R  R+ +  P+      + T         S  P R      
Sbjct: 537  RSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTPARRGRSRS 596

Query: 577  RTPGTARPR-----RRRCSGPRTRPWRRAATRSG*RCRR*TPPARSLACWRTACGP---- 729
            RTP   R R     RR  S  RT P RR   RSG    R      S    R+   P    
Sbjct: 597  RTPARRRSRSRSLVRRGRSHSRT-PQRRG--RSGSSSERKNKSRTSQRRSRSNSSPEMKK 653

Query: 730  --TPPSRAPRCWAPASSGCC*RCATAPSASC------CSARRRACSCTAPSWSSRA---A 876
                  R+    +P S     R + + S+ C         RR     + P   S+     
Sbjct: 654  SHVSSRRSRSLSSPRSKAKSLRRSLSGSSPCPKQKSQTPTRRSRSGSSPPKQKSKTPPRQ 713

Query: 877  WCSSPPWWTPSSGTWRVSGTATRTRARGC---------AR*FPASSATWRSRCTASCGPP 1029
              S+ P     SGT    G+ T  +A  C         +   P      R+    SC   
Sbjct: 714  SRSNSPQPKVKSGTPPRPGSVTNMQADECTATPQRQSHSESSPDGEVKSRTPSRQSCSGS 773

Query: 1030 ASRPSPPWPPSSQASGTCTSWPTLRRRPSSTSAATSAGSTPSPGR 1164
            + R     PP    S + +  P ++   S    + S+ S+PSP R
Sbjct: 774  SPRVKSSTPPRQSPSRSSSPQPKVKTVISPRGRSHSSSSSPSPSR 818

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 109/397 (27%), Positives = 150/397 (37%), Gaps = 18/397 (4%)
 Frame = +1

Query: 49   SSRVPRAGCRARLVSPLRTVNMIWGISHQRRMRRRSR*RRAPVRATRRRTRSPKSPRKRT 228
            S R  R+  R+R+    R      G  +  R   R    R   R  R R+R+P + RKR+
Sbjct: 1658 SRRRQRSRSRSRVTRRRRG-----GSGYHSRSPTRQESSRTSSRRRRGRSRTPLTSRKRS 1712

Query: 229  ALMSQ---W-RK*SRLAEPRRRRTRRRLPRSWNLISRRTLCPGSTRTKSRVRQNSPRRRI 396
               +    W R  SR +    RR+R R P    LISRR     ++    R  ++  RRR 
Sbjct: 1713 RSRTSPAPWKRSRSRASPATHRRSRSRTP----LISRRRSRSRTSPVSRRRSRSVNRRRS 1768

Query: 397  LSGPRPAS-----GWTPSCPERTSTWSGRPTRTWTTCPSAAASCP-TWTATWTRWAPSSA 558
             S   P S       TP    R S      +RT T   S + + P T   + +R  P + 
Sbjct: 1769 RSRASPVSRRRSRSRTPPVTRRRSR-----SRTPTRRRSRSRTPPVTRRRSRSRTPPVTR 1823

Query: 559  APTRGLRTPGTARPRRRRCSGPRTRPWRRAATRSG*RCRR*TPPARSLACWRTACGPTPP 738
              +R   +P T R  R R S P TR  RR+ +R+    RR +    S    R +   TPP
Sbjct: 1824 RRSRSRTSPVTRRRSRSRTS-PVTR--RRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPP 1880

Query: 739  S--RAPRCWAPASSGCC*RCATAPSASCCSARRRACSCTAPSWSSRAAWCSSPP-----W 897
            +  R  R   P           + S S  + RRR+ S T  +   + +   SPP      
Sbjct: 1881 AIRRRSRSRTPLLPR-----KRSRSRSPLAIRRRSRSRTPRAARGKRSLTRSPPAIRRRS 1935

Query: 898  WTPSSGTWRVSGTATRTRARGCAR*FPASSATWRSRCTASCGPPASRPSPPWPPSSQASG 1077
             + SS     S T   TR    +R  P + ++ R  C        SRPS    P  +   
Sbjct: 1936 ASGSSSDRSRSATPPATRNHSGSRTPPVALSSSRMSC-------FSRPSMSPTPLDRCRS 1988

Query: 1078 TCTSWPT-LRRRPSSTSAATSAGSTPSPGRRQDCGPR 1185
                 P    R P S    T       PG R    PR
Sbjct: 1989 PGMLEPLGSARTPMSVLQQTGGSMMDGPGPRIPDHPR 2025

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 95/350 (27%), Positives = 136/350 (38%), Gaps = 3/350 (0%)
 Frame = +1

Query: 145  RRRSR*RRAPVRATRRRTRSPKSPRKRTALMSQWRK*SRLAEPRRRRTRRRLPRSWNLIS 324
            R RSR  R P +    R+RSP+  R R+A   +W K SR +  RR R+R      W+  S
Sbjct: 393  RGRSR-SRTPTKRGHSRSRSPQWRRSRSA--QRWGK-SR-SPQRRGRSRSPQRPGWSR-S 446

Query: 325  RRTLCPGSTRTKSRVRQN--SPRRRILSGPRPASGWTPSCPERTSTWSGRPTRTWTTCPS 498
            R T   G +R+  R R +  SP  R  S  R     TP+   R+ + +    R+ +  P+
Sbjct: 447  RNTQRRGRSRSARRGRSHSRSPATRGRSRSR-----TPARRGRSRSRTPARRRSRSRTPA 501

Query: 499  AAASCPTWTATWTRWAPSSAAPTRG-LRTPGTARPRRRRCSGPRTRPWRRAATRSG*RCR 675
               S     A   R    + A  R   R+P   R R R  +    R   R   R   R R
Sbjct: 502  RRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSQARRSGRSRSRTPARRSGRSR 561

Query: 676  R*TPPARSLACWRTACGPTPPSRAPRCWAPASSGCC*RCATAPSASCCSARRRACSCTAP 855
              TP  R  +  RT   P   S   R   PA  G         S S   ARRR+ S    
Sbjct: 562  SRTPARRGRSRSRT---PARRSARSRSRTPARRG--------RSRSRTPARRRSRS---R 607

Query: 856  SWSSRAAWCSSPPWWTPSSGTWRVSGTATRTRARGCAR*FPASSATWRSRCTASCGPPAS 1035
            S   R    S  P     SG    S +  + ++R   R   ++S+    +   S     S
Sbjct: 608  SLVRRGRSHSRTPQRRGRSG----SSSERKNKSRTSQRRSRSNSSPEMKKSHVSSRRSRS 663

Query: 1036 RPSPPWPPSSQASGTCTSWPTLRRRPSSTSAATSAGSTPSPGRRQDCGPR 1185
              SP     S       S P  +++  + +  + +GS+P P ++    PR
Sbjct: 664  LSSPRSKAKSLRRSLSGSSPCPKQKSQTPTRRSRSGSSP-PKQKSKTPPR 712

 Score = 40.8 bits (94), Expect = 0.047
 Identities = 33/99 (33%), Positives = 45/99 (45%)
 Frame = -3

Query: 762  RPAARRPRRRRWATRCSPARQRPCGWCSPPAPSARASSRSSPGPCTRSTAASSPRACRTG 583
            R  +R P RRR  +R  P  +R     +PP    R+ SR+SP    RS + +SP   R  
Sbjct: 1791 RSRSRTPTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRS 1850

Query: 582  RPQSTSWRS**WSPASPRRCPGRTARCCGWTGRPGPSRT 466
            R ++        SP + RR   RT+     T R   SRT
Sbjct: 1851 RSRT--------SPVTRRRSRSRTSPV---TRRRSRSRT 1878

>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2296

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 106/384 (27%), Positives = 146/384 (37%), Gaps = 15/384 (3%)
 Frame = +1

Query: 49   SSRVPRAGCRARLVSPLRTVNMIWGISHQRRMRRRSR*RRAPVRATRRRTRSPKSPRKRT 228
            S R  R+  R+R+    R      G  +  R   R    R   R  R R+R+P + RKR+
Sbjct: 1798 SRRRQRSRSRSRVTRRRRG-----GSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRS 1852

Query: 229  ALMSQ---W-RK*SRLAEPRRRRTRRRLPRSWNLISRRTLCPGSTRTKSRVRQNSPRRRI 396
               +    W R  SR +    RR+R R P      SR    P S R +SR R +  RRR 
Sbjct: 1853 RSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVS-RRRSRSRTSVTRRRS 1911

Query: 397  LSGPRPAS-----GWTPSCPERTSTWSGRPTRTWTTCPSAAASCPTWTATWTRWAPSSAA 561
             S   P S       TP    R S      +RT TT   + +  P  T   +R   S   
Sbjct: 1912 RSRASPVSRRRSRSRTPPVTRRRSR-----SRTPTTRRRSRSRTPPVTRRRSR---SRTP 1963

Query: 562  PTRGLRTPGTARPRRRRCSGPRTRP--WRRAATRSG*RCRR*TPPARSLACWRTACGPTP 735
            P    R+     P  RR S  RT P   RR+ +R+    RR +    S    R +   TP
Sbjct: 1964 PVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTP 2023

Query: 736  PSR-APRCWAPASSGCC*RC---ATAPSASCCSARRRACSCTAPSWSSRAAWCSSPPWWT 903
            P++  PR   P++     RC    T P A   S    A + T  S        S P    
Sbjct: 2024 PAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGV 2083

Query: 904  PSSGTWRVSGTATRTRARGCAR*FPASSATWRSRCTASCGPPASRPSPPWPPSSQASGTC 1083
            P S                     PAS+   +    A+  P   R S     SS +S + 
Sbjct: 2084 PHSDVGEP----------------PASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSS 2127

Query: 1084 TSWPTLRRRPSSTSAATSAGSTPS 1155
            +S        SS+S+++S+GS+ S
Sbjct: 2128 SS--------SSSSSSSSSGSSSS 2143

 Score = 60.1 bits (144), Expect = 7e-08
 Identities = 107/399 (26%), Positives = 154/399 (37%), Gaps = 28/399 (7%)
 Frame = +1

Query: 52   SRVPRAGCRARLVSPLRTVNMIWGISHQRRMRRRSR*RRAPVRATRRRTRSPKSPRKRTA 231
            SR P    R+R  +P R  +       +   RRRSR  R P R  R R+R+P   R RT 
Sbjct: 575  SRTPARRGRSRSRTPARRRSR-----SRTPTRRRSR-SRTPARRGRSRSRTPARRRSRT- 627

Query: 232  LMSQWRK*SRLAEPRRR--RTRRRLP-RSWNLISRRTLCPGSTRTKS------RVRQNSP 384
              S  R+ SR   P RR  R+R R P R     SR     G +R+++      R R  +P
Sbjct: 628  -RSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTP 686

Query: 385  RRRILS---GPRPASGWTPSCPERTSTWSGRPTRTWTTCPSAAASCPTWTATWTRWAPSS 555
             RR  S    PR     + S   R  + S  P R   +  S+     + T+   R + S+
Sbjct: 687  ARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTS--QRRSRSN 744

Query: 556  AAPTRGLRTPGTARPRRRRCSGPRTRPWRRAATRSG*RCRR*TPPARSLACWRTACGPTP 735
            ++P   ++    +  R R  S PR++   R + R         P  +S          TP
Sbjct: 745  SSPE--MKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKS---------QTP 793

Query: 736  PSRAPRCWAPASSGCC*RCATAPSASCCSARRRACSCTAP------SWSSRAAWCSSPPW 897
            P R       + SG     ++ P A   +  RR+ S ++P         SR +  SS P 
Sbjct: 794  PRR-------SRSG-----SSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPH 841

Query: 898  WTPSSGTWRVSGTATRTRA---------RGCAR*FPASSATWRSRCTASC-GPPASRPSP 1047
                SGT    G+ T  +A         R C    P      R+    SC G    R   
Sbjct: 842  PKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHSCSGSSPPRVKS 901

Query: 1048 PWPPSSQASGTCTSWPTLRRRPSSTSAATSAGSTPSPGR 1164
              PP    S + +  P ++   S    + S  S+PSP R
Sbjct: 902  STPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSR 940

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 101/395 (25%), Positives = 145/395 (36%), Gaps = 58/395 (14%)
 Frame = +1

Query: 145  RRRSR*RRAPVRATRRRTRSPKSPRKRTALMSQWRK*SRLAEPRRRRTRRRLPRSWNLIS 324
            RRR R R  P    R R+R+  +P KR+         SR +    RR+R R P      S
Sbjct: 1837 RRRGRSRTPPTSRKRSRSRTSPAPWKRSR--------SRASPATHRRSRSRTPLISRRRS 1888

Query: 325  RRTLCPGSTRTKSRVRQNSPRRRILSGPRPAS-----GWTPSCPERTSTWSGRPTRTWTT 489
            R    P S R +SR R +  RRR  S   P S       TP    R S      +RT TT
Sbjct: 1889 RSRTSPVSRR-RSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSR-----SRTPTT 1942

Query: 490  CPSAAASCPTWTATWTRWAPSSAAPTRGLRTPGTARPRRRRCSGPRTRPW--RRAATRSG 663
               + +  P  T   +R   S   P    R+     P  RR S  RT P   RR+ +R+ 
Sbjct: 1943 RRRSRSRTPPVTRRRSR---SRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTS 1999

Query: 664  *RCRR*TPPARSLACWRTACGPTPPSR-APRCWAPASSGCC*RCA---TAPSASCCSARR 831
               RR +    S    R +   TPP++  PR   P++     RC    T P A   S   
Sbjct: 2000 PVTRRRSRSRTSPVTRRRSRSRTPPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSLSS 2059

Query: 832  RACSCTAPSWSSRAAWCSSPPWWTP---------SSGTWRVSGTAT-------RTRARGC 963
             A + T  S        S P    P         S+G  + S  A        R+ +   
Sbjct: 2060 GAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSS 2119

Query: 964  AR*FPASSATWRSRCTASCGPPAS-------------------------------RPSPP 1050
            +    +SS++  S  ++S G  +S                               RP  P
Sbjct: 2120 SSSSSSSSSSSSSSSSSSSGSSSSDSEGSSFLCNLSGTEEVPSPTPAPKEAVREGRPPEP 2179

Query: 1051 WPPSSQASGTCTSWPTLRRRPSSTSAATSAGSTPS 1155
             P   +   + +S  +     SS+S+++S+ S+ S
Sbjct: 2180 TPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSS 2214

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 106/371 (28%), Positives = 144/371 (38%), Gaps = 26/371 (7%)
 Frame = +1

Query: 127  SHQRRMRRRSR*RRAP-VRATRRRTRSPKSPRKRTALMSQWRK*SRLAEPRRRRTRRRLP 303
            + + R  RR R   +P  + T RR RSP SP+ R    S+ R     +   + RT RR  
Sbjct: 1736 AEKSRSSRRRRSASSPRTKTTSRRGRSP-SPKPRGLQRSRSR-----SRREKTRTTRRRD 1789

Query: 304  RSWNLISRRTLCPGSTRTKSRVRQNS-PRRRILSGPRPASGWTPSCPER--TSTWSGRPT 474
            RS           GS+++ SR RQ S  R R+    R  SG+    P R  +S  S R  
Sbjct: 1790 RS-----------GSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRR 1838

Query: 475  RTWTTCPSAA-------ASCPTWTATWTRWAPS------------SAAPTRGLRTPGTAR 597
            R  +  P  +        S   W  + +R +P+            S   +R   +P + R
Sbjct: 1839 RGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRR 1898

Query: 598  PRRRRCSGPRTRPWRRAATRSG*RCRR*TPPARSLACWRTACGPTPPS-RAPRCWAPASS 774
              R R S  R R   RA+  S  R R  TPP       R +   TP + R  R   P  +
Sbjct: 1899 RSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTR----RRSRSRTPTTRRRSRSRTPPVT 1954

Query: 775  GCC*RCATAPSASCCSARRRACSCTAPSWSSRAAWCSSPPWWTPSSGTWRVSGTATRTRA 954
                R  T P       RRR+ S T+P    R+   +SP     S      S T+  TR 
Sbjct: 1955 RRRSRSRTPP-----VTRRRSRSRTSPITRRRSRSRTSPVTRRRSR-----SRTSPVTRR 2004

Query: 955  RGCAR*FPASSATWRSRCTASCGPPA-SRPSPPWPPSSQASGTCTSWPTLRRRPS-STSA 1128
            R  +R  P +    RSR      PPA  +P  P P +      C    T     S S S+
Sbjct: 2005 RSRSRTSPVTRRRSRSRT-----PPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSLSS 2059

Query: 1129 ATSAGSTPSPG 1161
               A +T S G
Sbjct: 2060 GAVATTTSSAG 2070

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 101/390 (25%), Positives = 141/390 (35%), Gaps = 37/390 (9%)
 Frame = +1

Query: 127  SHQRRMRRRSR*RRAPVRATRRRTRSPKSPRKRTALMS---QWRK*SRLAE-------PR 276
            SH     RR    R+P  A R R+RS ++P KR    S   QWR+ SR A+       P+
Sbjct: 472  SHSHTPSRRMGRSRSPATAKRGRSRS-RTPTKRGHSRSRSPQWRR-SRSAQRWGRSRSPQ 529

Query: 277  RRRTRRRLPRSWNLISRRTLCPGSTR-------------TKSRVRQNSPRRRILSGPR-P 414
            RR   R   R     SR T   G +R             T+ R R  +P RR  S  R P
Sbjct: 530  RRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTP 589

Query: 415  ASGWTPS-CPERTSTWSGRPTRTWTTCPSAAASCPTWTATWTRWAPSSAAPTR-----GL 576
            A   + S  P R  + S  P R   +     A   + T +  R    S +P R       
Sbjct: 590  ARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRS 649

Query: 577  RTPGTARPRRRRCSGPRTRPWRRAATRSG*RCRR*TPPARSLACWRTACGPTPPSRA--- 747
            RTP      R R    R R   R   R   R R  TP  R  +  RT       SR+   
Sbjct: 650  RTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVR 709

Query: 748  ---PRCWAPASSGCC*RCATAPSASCCSARRRACSCTAPSWSSRAAWCSSPPWWTP-SSG 915
                    P   G     +   + S  S RR   + +     SR +   S    +P S  
Sbjct: 710  RGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKA 769

Query: 916  TWRVSGTATRTRARGCAR*FPASSATWRSRCTASCGPPASRPSPPWPPSSQASGTCTSWP 1095
              R+S   + + +  C +    S    R   + S  P A   +PP    S +S      P
Sbjct: 770  KSRLSLRRSLSGSSPCPK--QKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSS------P 821

Query: 1096 TLRRRPSSTSAATSAGSTPSPGRRQDCGPR 1185
              +++  + S  + + S+P P  +    PR
Sbjct: 822  PPKQKSKTPSRQSHSSSSPHPKVKSGTPPR 851

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 104/394 (26%), Positives = 141/394 (35%), Gaps = 51/394 (12%)
 Frame = +1

Query: 142  MRRRSR*RRAPV-----RATRRRTRSPKSP----RKRTALMSQWRK*SR--------LAE 270
            +R+RSR   +P      R + RR+RS  SP    + R A  +Q    S          A 
Sbjct: 1573 LRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRAL 1632

Query: 271  PRRRRT------RRRLPRSWNLISRRTLCPGSTRTKSRVRQNSPRRRILSGPRPASGWTP 432
            PRR R+      R   P   +        P  +RT  R  ++SP  +  S   P    + 
Sbjct: 1633 PRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSR 1692

Query: 433  SCPERTSTWSGRPTRTWTTCPSAAASCPTWTATWTRWAPSSAAPTRGLRTPGTARPRRRR 612
            S PE T     R  R      SA++S  T + T  R   S +  +        +  RRR 
Sbjct: 1693 SSPELT-----RKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRS 1747

Query: 613  CSGPRTR----------PWRRAATRSG*RCRR*TP--------PARSLACWRTACGPTPP 738
             S PRT+          P  R   RS  R RR              S +  R        
Sbjct: 1748 ASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSR 1807

Query: 739  SRAPRCWAPASSGCC*RCATAPSASCCSARRRACSCTAPSWSSRAAWCSSPPWW------ 900
            SR  R     S       A   S+   S RRR  S T P+   R+   +SP  W      
Sbjct: 1808 SRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSR 1867

Query: 901  -TPSSGTWRVSGTATRTRARGCAR*FPASSATWRSRCTASCGPPASRPSPPWPPSSQASG 1077
             +P++     S T   +R R  +R  P S    RSR + +     SR S    P S+   
Sbjct: 1868 ASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRAS----PVSRRRS 1923

Query: 1078 TCTSWPTLRRRPSSTSAAT---SAGSTPSPGRRQ 1170
               + P  RRR  S +  T   S   TP   RR+
Sbjct: 1924 RSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRR 1957

 Score = 37.4 bits (85), Expect = 0.52
 Identities = 58/190 (30%), Positives = 76/190 (39%), Gaps = 13/190 (6%)
 Frame = -3

Query: 1038 PRGRRPT*GCTSAPPGRARCRESSCTAASPGPCCCTGHTPRPGAWRPPRWAGTPRRT**P 859
            PR RR     +  P  ++R      +A+SP     T  T R G    P+  G  R     
Sbjct: 1722 PRHRRSPSVSSPEPAEKSRSSRRRRSASSPR----TKTTSRRGRSPSPKPRGLQRSRSRS 1777

Query: 858  GRRCTGTGTPPG*AAGCAWSGSAPLAAAR*SWRPAARRPRRRRWATRCSPARQRPCGWCS 679
             R  T T T     +G + S S     +R   R   RR     + +R SPARQ      S
Sbjct: 1778 RREKTRT-TRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSR-SPARQESSRTSS 1835

Query: 678  ---------PPAPSARASSRSSPGPCTRSTAASSP---RACRTGRPQSTSWRS-**WSPA 538
                     PP    R+ SR+SP P  RS + +SP   R  R+  P  +  RS    SP 
Sbjct: 1836 RRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPV 1895

Query: 537  SPRRCPGRTA 508
            S RR   RT+
Sbjct: 1896 SRRRSRSRTS 1905

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
 Frame = -3

Query: 762  RPAARRPR-RRRWATRCSPARQRPCGWCSPPAPSARASSRSSPGPCTRSTAASSPRACRT 586
            R  +R P  RRR  +R  P  +R     +PP    R+ SR+SP    RS + +SP   R 
Sbjct: 1934 RSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRR 1993

Query: 585  GRPQSTSWRS**WSPASPRRCPGRTARCCGWTGRPGPSRT 466
             R ++        SP + RR   RT+     T R   SRT
Sbjct: 1994 SRSRT--------SPVTRRRSRSRTSPV---TRRRSRSRT 2022

EST assemble image

clone accession position 1 CM044g01_r AV389523 1 361 2 CM079e01_r AV391969 4 606 3 HC096b11_r AV639195 74 335 4 MXL012f02_r BP093721 92 606 5 MXL013a04_r BP093744 98 239 6 LC040b03_r AV621720 265 762 7 MX248h12_r BP092042 583 1064 8 LC042d08_r AV621903 675 1187

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