Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001391A_C01 KCC001391A_c01
(465 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC65569.1| mKIAA0458 protein [Mus musculus] 37 0.084
ref|NP_057417.2| splicing coactivator subunit SRm300; RNA bindin... 35 0.55
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Ho... 35 0.55
dbj|BAA83714.1| RNA binding protein [Homo sapiens] 35 0.55
dbj|BAA83713.1| RNA binding protein [Homo sapiens] 35 0.55
>dbj|BAC65569.1| mKIAA0458 protein [Mus musculus]
Length = 882
Score = 37.4 bits (85), Expect = 0.084
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Frame = +1
Query: 52 TSVRRSVRHSTTPPLSPSSLRASAYRRA---YMQLPT--PRPATKSHEPLG*ELRSRR-H 213
+S ++ + + P L S ASA A QLPT P P+ + P G S+ +
Sbjct: 55 SSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPN 114
Query: 214 ASQNVARPAAHTHTNQPTLLLGARCPGRSIPVEP*PEPLRLGCAAP 351
+Q+ PAAHTH Q L R P P++P P A P
Sbjct: 115 QTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQP 160
>ref|NP_057417.2| splicing coactivator subunit SRm300; RNA binding protein; AT-rich
element binding factor [Homo sapiens]
gi|5821153|dbj|BAA83718.1| RNA binding protein [Homo
sapiens]
Length = 2752
Score = 34.7 bits (78), Expect = 0.55
Identities = 21/77 (27%), Positives = 34/77 (43%)
Frame = +1
Query: 25 RQRSPI*LHTSVRRSVRHSTTPPLSPSSLRASAYRRAYMQLPTPRPATKSHEPLG*ELRS 204
R RSP + +S ++PP SP + S + + + P P PA SH + S
Sbjct: 401 RDRSPPKSPEKLPQSSSSESSPP-SPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTS 459
Query: 205 RRHASQNVARPAAHTHT 255
+ + R +H+HT
Sbjct: 460 KNRSHGRAKRDKSHSHT 476
>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2296
Score = 34.7 bits (78), Expect = 0.55
Identities = 21/77 (27%), Positives = 34/77 (43%)
Frame = +1
Query: 25 RQRSPI*LHTSVRRSVRHSTTPPLSPSSLRASAYRRAYMQLPTPRPATKSHEPLG*ELRS 204
R RSP + +S ++PP SP + S + + + P P PA SH + S
Sbjct: 401 RDRSPPKSPEKLPQSSSSESSPP-SPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTS 459
Query: 205 RRHASQNVARPAAHTHT 255
+ + R +H+HT
Sbjct: 460 KNRSHGRAKRDKSHSHT 476
>dbj|BAA83714.1| RNA binding protein [Homo sapiens]
Length = 956
Score = 34.7 bits (78), Expect = 0.55
Identities = 21/77 (27%), Positives = 34/77 (43%)
Frame = +1
Query: 25 RQRSPI*LHTSVRRSVRHSTTPPLSPSSLRASAYRRAYMQLPTPRPATKSHEPLG*ELRS 204
R RSP + +S ++PP SP + S + + + P P PA SH + S
Sbjct: 366 RDRSPPKSPEKLPQSSSSESSPP-SPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTS 424
Query: 205 RRHASQNVARPAAHTHT 255
+ + R +H+HT
Sbjct: 425 KNRSHGRAKRDKSHSHT 441
>dbj|BAA83713.1| RNA binding protein [Homo sapiens]
Length = 1262
Score = 34.7 bits (78), Expect = 0.55
Identities = 21/77 (27%), Positives = 34/77 (43%)
Frame = +1
Query: 25 RQRSPI*LHTSVRRSVRHSTTPPLSPSSLRASAYRRAYMQLPTPRPATKSHEPLG*ELRS 204
R RSP + +S ++PP SP + S + + + P P PA SH + S
Sbjct: 191 RDRSPPKSPEKLPQSSSSESSPP-SPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTS 249
Query: 205 RRHASQNVARPAAHTHT 255
+ + R +H+HT
Sbjct: 250 KNRSHGRAKRDKSHSHT 266
