KCC001386A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001386A_C01 KCC001386A_c01
gagCTCGATACTAGCTTACATACACCAGCGCATCACACCGGCGACGCCATGTGAAGCACA
TGCTGCCGTTACCGTGTCTGCATGAACTTGAAGCCTCGATGGTACATCGTGATGGTACAT
CTACACCAGGGAATCCTTACGGCACTATTTAGCCGCACGGAAGCCAGTGCATTCCTTCCA
GTGTCCATATGGATTACCATGGCCCTACCCCGAGCGGATTGAGGTAATGGTAGTGTTAGC
ACGCCCTCAGTAACTGTCAAATAGTCAAGTCATCATCATACGACCGTTCCGGGGCGACGC
TAGCTCGGACCCCACCTGATGCACCTTTGCGCACACGCGCTCTGCGGTATTCTGCCCCTG
AACCCTTGACGCGCCATCAGTACAGCACACGCCCACAAAACCAGCATCACTTCGCACCCT
CACACTCCACAACGTCACACGCGCACGCCACATCAACTCTGCCACCTCCCCATCACCGCC
GCGTCGGTGACCCACGCTTCCCGCCTGTCGCGTCTGCCCCCGCTGGCCGGACCTTAATGG
CCGTCTCCAGCTTCCGCGGCAGCGTCCGTTGCACCTTGCTCTCCAGATGCTCACGCGTCA
gcgggcggtcctcttccaccggctccggttccagcccctccacctcctcctcctgcgtag
tgctgggcggctcgatgatg


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001386A_C01 KCC001386A_c01
         (680 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK72125.1| outer dynein arm docking complex protein ODA1 [Ch...   135  4e-31
gb|AAH46717.1| Similar to zinc finger protein 162 [Xenopus laevis]     51  1e-05
ref|ZP_00056820.1| COG2115: Xylose isomerase [Thermobifida fusca]      50  2e-05
emb|CAD70966.1| probable Cytokinesis protein sepA [Neurospora cr...    49  5e-05
ref|XP_327870.1| hypothetical protein [Neurospora crassa] gi|289...    49  5e-05

>gb|AAK72125.1| outer dynein arm docking complex protein ODA1 [Chlamydomonas
           reinhardtii]
          Length = 552

 Score =  135 bits (341), Expect = 4e-31
 Identities = 67/68 (98%), Positives = 67/68 (98%)
 Frame = -2

Query: 679 IIEPPSTTQEEEVEGLEPEPVEEDRPLTREHLESKVQRTLPRKLETAIKVRPAGADATGG 500
           IIEPPST QEEEVEGLEPEPVEEDRPLTREHLESKVQRTLPRKLETAIKVRPAGADATGG
Sbjct: 485 IIEPPSTMQEEEVEGLEPEPVEEDRPLTREHLESKVQRTLPRKLETAIKVRPAGADATGG 544

Query: 499 KRGSPTRR 476
           KRGSPTRR
Sbjct: 545 KRGSPTRR 552

>gb|AAH46717.1| Similar to zinc finger protein 162 [Xenopus laevis]
          Length = 571

 Score = 51.2 bits (121), Expect = 1e-05
 Identities = 45/135 (33%), Positives = 56/135 (41%), Gaps = 7/135 (5%)
 Frame = +1

Query: 271 HHHTTVPGRR*LGPHLMHLCAHALCGILPLNP*RAISTAHAHKTSITSHPHTPQRHTRTP 450
           HHH   P     GPH M L      G++P  P  +         S  S P   Q+ T  P
Sbjct: 393 HHHWMQPHHS--GPHPMGLLHSHPMGLMPPPPPPSGPAPPPPPPSAPSLPPWQQQATGAP 450

Query: 451 HQLC-HLPITAASVTHASRLSRLPPLAGP*WPSPASAA------ASVAPCSPDAHASAGG 609
            Q   HLP   +S T  S  + LPP       + +S+A      AS+ P  P        
Sbjct: 451 PQTGGHLPWHQSSPTTVSGTASLPPWQQGAGSTTSSSAPQLQTTASLVPPLPGVQP---- 506

Query: 610 PLPPAPVPAPPPPPP 654
           PLPP+  P PPPPPP
Sbjct: 507 PLPPSAPPPPPPPPP 521

>ref|ZP_00056820.1| COG2115: Xylose isomerase [Thermobifida fusca]
          Length = 754

 Score = 50.4 bits (119), Expect = 2e-05
 Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
 Frame = +1

Query: 355 PLNP*RAISTAHAHKTSITSHPHTPQRHTRTPHQLCHLPITAASVTHASRLSRLPPLAGP 534
           P  P R+ S +     S + HP  P   +  P    + P T  +   AS  S  P    P
Sbjct: 186 PPEPLRSASPSKNSTNSPSPHPPAPAASSSCPTSTANAPPTCPTPPAASTASPEPTSPPP 245

Query: 535 *WPSPASAAASVAPCSPD------------AHASAGGPLPPAPVPAPP 642
            WP+P+S A S A  +P             + +SA  P PP   P+PP
Sbjct: 246 TWPAPSSKACSAASLTPSTPSSTKVSPSTVSSSSAAAPAPPQSAPSPP 293

 Score = 35.8 bits (81), Expect = 0.61
 Identities = 35/109 (32%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
 Frame = +1

Query: 355 PLNP*RAISTAHAHKTSITSHPHTPQRHTRTPHQLCHLPITAASVTHASRLSRLPPLAGP 534
           P NP    +T  A  T  T+ P TP   T +P           S       +  PP   P
Sbjct: 54  PPNPSPTAATPPAPAT--TTPPPTPTGPTCSPSPSAANSAPRESPPPPKSSAASPPPNSP 111

Query: 535 *WPSPASAAASV----APCSPDAHAS---AGGPLPPAPVPA-PPPPPPA 657
              S A A A+     +P +PD   S   +  P PP+P P  PPP PPA
Sbjct: 112 PSTSSAPAPATTWPPHSPSTPDPATSSSPSAPPEPPSPSPKNPPPTPPA 160

 Score = 34.3 bits (77), Expect = 1.8
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 469 PITAASVTHASRLSRLPPLAGP*WPSPASAAASVAPCSPDAHASAGGP-LPPAPVPAPPP 645
           P +  S + A   +   P   P  P PA++++  AP  P + +    P  PPAP P  P 
Sbjct: 108 PNSPPSTSSAPAPATTWPPHSPSTPDPATSSSPSAPPEPPSPSPKNPPPTPPAPSPDSPT 167

Query: 646 PPPA 657
           PP A
Sbjct: 168 PPDA 171

 Score = 33.5 bits (75), Expect = 3.0
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +1

Query: 445 TPHQLCHLPITAASVTHASRLSRLPPLAGP*WPSPASAAASVAPCSPDAHASAGGPLPPA 624
           TP       ++ ++V+ +S  +  PP + P   SP  ++A+ +P  P A+ S   P    
Sbjct: 261 TPSTPSSTKVSPSTVSSSSAAAPAPPQSAP---SPPKSSAAPSPSQPKANTSPTAPPAKQ 317

Query: 625 PVPAPPPPP 651
           P  +P  PP
Sbjct: 318 PGHSPANPP 326

>emb|CAD70966.1| probable Cytokinesis protein sepA [Neurospora crassa]
          Length = 1790

 Score = 49.3 bits (116), Expect = 5e-05
 Identities = 33/93 (35%), Positives = 42/93 (44%)
 Frame = +1

Query: 376  ISTAHAHKTSITSHPHTPQRHTRTPHQLCHLPITAASVTHASRLSRLPPLAGP*WPSPAS 555
            I+T  +H +  +  P TP   T TP     + +T A+   A   +  PP   P  P P  
Sbjct: 988  ITTGPSHPSMESQTPITPS-DTETPK----IQVTDATGPSAPAAASGPPPPPPP-PPPPP 1041

Query: 556  AAASVAPCSPDAHASAGGPLPPAPVPAPPPPPP 654
                  P +P     AGGP PP P P PPPPPP
Sbjct: 1042 PPPGFLPGAPAPIPGAGGPPPPPPPPPPPPPPP 1074

 Score = 37.7 bits (86), Expect = 0.16
 Identities = 20/45 (44%), Positives = 20/45 (44%)
 Frame = +1

Query: 517  PPLAGP*WPSPASAAASVAPCSPDAHASAGGPLPPAPVPAPPPPP 651
            PP   P  P P       AP  P     AGGP PP P P PPP P
Sbjct: 1063 PPPPPPPPPPPPGGLPGAAPPMP----GAGGPPPPPPPPPPPPMP 1103

>ref|XP_327870.1| hypothetical protein [Neurospora crassa] gi|28917030|gb|EAA26755.1|
            hypothetical protein [Neurospora crassa]
          Length = 1817

 Score = 49.3 bits (116), Expect = 5e-05
 Identities = 33/93 (35%), Positives = 42/93 (44%)
 Frame = +1

Query: 376  ISTAHAHKTSITSHPHTPQRHTRTPHQLCHLPITAASVTHASRLSRLPPLAGP*WPSPAS 555
            I+T  +H +  +  P TP   T TP     + +T A+   A   +  PP   P  P P  
Sbjct: 988  ITTGPSHPSMESQTPITPS-DTETPK----IQVTDATGPSAPAAASGPPPPPPP-PPPPP 1041

Query: 556  AAASVAPCSPDAHASAGGPLPPAPVPAPPPPPP 654
                  P +P     AGGP PP P P PPPPPP
Sbjct: 1042 PPPGFLPGAPAPIPGAGGPPPPPPPPPPPPPPP 1074

 Score = 37.7 bits (86), Expect = 0.16
 Identities = 20/45 (44%), Positives = 20/45 (44%)
 Frame = +1

Query: 517  PPLAGP*WPSPASAAASVAPCSPDAHASAGGPLPPAPVPAPPPPP 651
            PP   P  P P       AP  P     AGGP PP P P PPP P
Sbjct: 1063 PPPPPPPPPPPPGGLPGAAPPMP----GAGGPPPPPPPPPPPPMP 1103

 Score = 32.0 bits (71), Expect = 8.9
 Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
 Frame = +1

Query: 517  PPLAGP*WPSPASAAASVAPCSPDAHASAGGPLPPAPVPA--------PPPPPP 654
            PP+ G   P P        P  P     AG P PP P P         PPPPPP
Sbjct: 1082 PPMPGAGGPPPPPPP----PPPPPMPGMAGMPPPPPPPPPMPGMPGMPPPPPPP 1131



EST assemble image


clone accession position
1 CM043f10_r AV389478 1 354
2 MXL095g11_r BP098580 4 302
3 MXL009h09_r BP093546 222 680




Chlamydomonas reinhardtii
Kazusa DNA Research Institute