KCC001385A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001385A_C01 KCC001385A_c01
tacaCTGAGACATCACTCGTATAACAGATAGTCTCCGAGGTTCCAACGCTGCCATACAAG
CTCGTCGTTATCTCGCGAATCCAGAGACATGGCCACCTTTGCCAACCCGGCAAGCTGCAG
TCGGACCGTGGCGACGAAGTCGTCTCGCAAATGCGCGCGAGAGTATCTGAGGGTGCATGC
CTCGGCAAGCGGAGCCTTCGGCGGCCACAACTCTGCTGCGGGTTCGGGAGGCAACCCGCG
CGCGAACATGAGCGGCGTGTTCCAGATACAAGGCTCACCCGTGCCATGTACAATGCTGGA
CGTCAGGGACGCCTACGAGGCCTGCAGCCTCACGTCAAGCCCCGCCGAGAGGCGCCAATG
CTTCGAGGTGTACGGGCTGGACAGCGACAAAGTGGACCGCTACTACGATCGTGTCGTGTC
TATGGAGCGGCTCATTGACCAGGGCGACTCGGTGGGGCAGAACATGGTGGCCTCCGGCGG
CGCCATGGCCCTGTACATGCTGGCGTGGTACATCCTGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001385A_C01 KCC001385A_c01
         (518 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_318209.1| ENSANGP00000001363 [Anopheles gambiae] gi|21301...    36  0.26
ref|ZP_00026390.1| COG3245: Cytochrome c5 [Ralstonia metallidurans]    36  0.34
ref|ZP_00028885.1| COG1744: Uncharacterized ABC-type transport s...    36  0.34
ref|ZP_00044107.1| COG2202: FOG: PAS/PAC domain [Magnetococcus s...    36  0.34
dbj|BAC87637.1| unnamed protein product [Homo sapiens]                 35  0.58

>ref|XP_318209.1| ENSANGP00000001363 [Anopheles gambiae] gi|21301215|gb|EAA13360.1|
           ENSANGP00000001363 [Anopheles gambiae str. PEST]
          Length = 198

 Score = 36.2 bits (82), Expect = 0.26
 Identities = 31/85 (36%), Positives = 34/85 (39%), Gaps = 3/85 (3%)
 Frame = +3

Query: 267 YKAHPCHVQCWTSGTPTRPAA-SRQAPPRGANAS-RCTGWTATKWTA-TTIVSCLWSGSL 437
           Y  H C   CW SGT T P   +R  P R    S  CTG     WT  T +  C  SG+ 
Sbjct: 119 YTPHRC---CWESGTCTGPCTWTRYTPLRCCCVSGTCTG--PCTWTGYTPLRCCCVSGTC 173

Query: 438 TRATRWGRTWWPPAAPWPCTCWRGT 512
           T     G   W    P  C C  GT
Sbjct: 174 T-----GPCTWTGYTPHRCCCESGT 193

>ref|ZP_00026390.1| COG3245: Cytochrome c5 [Ralstonia metallidurans]
          Length = 410

 Score = 35.8 bits (81), Expect = 0.34
 Identities = 22/64 (34%), Positives = 34/64 (52%)
 Frame = +1

Query: 229 RQPAREHERRVPDTRLTRAMYNAGRQGRLRGLQPHVKPRREAPMLRGVRAGQRQSGPLLR 408
           RQP R+++R +P+ R        GR G+ RG +  +KPR +A ++R      RQS P   
Sbjct: 46  RQPGRKNDRFIPENR-DAIQTRPGRNGQARG-RGQLKPRCDARVVRIASPRARQSKPPPT 103

Query: 409 SCRV 420
            C +
Sbjct: 104 CCAI 107

>ref|ZP_00028885.1| COG1744: Uncharacterized ABC-type transport system, periplasmic
           component/surface lipoprotein [Burkholderia fungorum]
          Length = 636

 Score = 35.8 bits (81), Expect = 0.34
 Identities = 47/152 (30%), Positives = 58/152 (37%), Gaps = 10/152 (6%)
 Frame = +1

Query: 64  VVISRIQRHGHLCQPGKLQSDRGDEVVSQMRARVSEGACLGKRSLRRPQLCCGFGRQPAR 243
           V   R+    H  QPG+ +      V   +R R   G C       R  L  G G +  R
Sbjct: 20  VAAVRLSHAHHARQPGRYRP-----VADDLRHRPL-GVC-------RQALHVGRGARDHR 66

Query: 244 --EHERRVPDTRLTRAMYNAGRQGRLRGLQPHVKPRREAPMLRGVR----AGQRQSGPLL 405
             +H R + D+R            R R +QPH       P +RG R    +  R SG  L
Sbjct: 67  HVDHSRPLEDSR-----------ARARTVQPHAARLPRVPDVRGDRLVPVSHTRGSGAAL 115

Query: 406 RSCRVYGAAH*PGRLGGA----EHGGLRRRHG 489
                 G A   GRL G       GGLRRRHG
Sbjct: 116 GRRIAAGGAL--GRLSGGGRALRRGGLRRRHG 145

>ref|ZP_00044107.1| COG2202: FOG: PAS/PAC domain [Magnetococcus sp. MC-1]
          Length = 1134

 Score = 35.8 bits (81), Expect = 0.34
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 257 VFQIQGSPVPCTMLDVRDAY-EACSLTSSPAERRQCFEVYGLDSDKVDRYYDRVV 418
           VF   G+P+   +L+V  AY E   +T   AE R   E+YG  S      Y+RVV
Sbjct: 504 VFNEHGNPIDYRILEVNKAYTEILGITKEQAEGRLATEIYGQTSPPYLELYNRVV 558

>dbj|BAC87637.1| unnamed protein product [Homo sapiens]
          Length = 286

 Score = 35.0 bits (79), Expect = 0.58
 Identities = 36/117 (30%), Positives = 48/117 (40%)
 Frame = -1

Query: 473 RPPCSAPPSRPGQ*AAP*TRHDRSSGPLCRCPARTPRSIGASRRGLT*GCRPRRRP*RPA 294
           RPP  APP+R    A P      +  P    PARTP +   +R   T    P R P  P 
Sbjct: 74  RPPTRAPPTRMPPTAPP------TRTPPTASPARTPPTESPARTPPT--ASPARTP--PR 123

Query: 293 LYMARVSLVSGTRRSCSRAGCLPNPQQSCGRRRLRLPRHAPSDTLARICETTSSPRS 123
               R    +  RR+ S A     P ++  RR    PR +P+ T  R     + PR+
Sbjct: 124 ASPTRTPPRASPRRTPSTASPTRTPPRASPRR--TPPRASPTRTPPRASPKRTPPRA 178



EST assemble image


clone accession position
1 LC016b01_r AV620002 1 514
2 MX021b10_r BP086950 5 399
3 CM043e11_r AV389517 18 171
4 LCL003d01_r AV626160 30 466
5 MX037g05_r BP087575 31 518




Chlamydomonas reinhardtii
Kazusa DNA Research Institute