KCC001382A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001382A_C01 KCC001382A_c01
gagagagagaactagtctcgagttttttttttttttttttCGCATGCAGCTTCGTTACAG
TGCACTACCAGTGGTAACTCTATAGCGGGCGnTATCCTATATGGCTTCCATGGCGCTTTG
TTGTCCTCCACCCCACCAAATGCCATTTGCACTTCCACTGCGACCTACATGTTTACAGCC
CACTACCGTACTACTACTACAGAGAACATAAGCCAAGGAGACGCCGGTGGTACGACGGTT
TCTCCGTGCGACA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001382A_C01 KCC001382A_c01
         (253 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC16060.1| hypothetical protein [Oryza sativa (japonica cul...    31  4.4
ref|ZP_00014493.1| COG0282: Acetate kinase [Rhodospirillum rubrum]     31  4.4
pir||T31108 cyst germination specific acidic repeat protein prec...    30  7.6
ref|XP_287916.1| hypothetical protein XP_287916 [Mus musculus]         30  9.9
ref|XP_162416.2| SCO-spondin [Mus musculus]                            30  9.9

>dbj|BAC16060.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 202

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = -2

Query: 213 AYVLCSSSTVVGCKHVGRSGSANGIWWGGGQQSAMEAI*DXARYRVTTGSAL*RSCMRKK 34
           A V+ ++  V G    GR G A G  WGGG+Q    A+    R+R        R C R++
Sbjct: 60  AVVVAAAGEVEG----GRCGGAGG-GWGGGRQGEARAMPGDGRHRKRCS----RRCGRRR 110

Query: 33  KKKNSRL 13
            ++++R+
Sbjct: 111 HRRDARV 117

>ref|ZP_00014493.1| COG0282: Acetate kinase [Rhodospirillum rubrum]
          Length = 414

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 120 VVLHPTKCHLHFHCDLHVYSPLPYYYYREHKPRR 221
           VV+  T  H       HV++ LPY+YY EHK RR
Sbjct: 142 VVVFDTSFHQGMPPHAHVFA-LPYHYYAEHKIRR 174

>pir||T31108 cyst germination specific acidic repeat protein precursor -
           Phytophthora infestans gi|3851514|gb|AAC72308.1| cyst
           germination specific acidic repeat protein precursor
           [Phytophthora infestans]
          Length = 1489

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 151 TSTATYMFTAHYRTTTTENISQGDAGGTTVSPCD 252
           T T  Y  T HY +TTTE +++G  G T     D
Sbjct: 185 TQTGDYGNTIHYGSTTTEGVTKGGYGPTDAKVID 218

>ref|XP_287916.1| hypothetical protein XP_287916 [Mus musculus]
          Length = 145

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 17/40 (42%), Positives = 18/40 (44%)
 Frame = +3

Query: 18  SSFFFFFFACSFVTVHYQW*LYSGRYPIWLPWRFVVLHPT 137
           SS FFFF        H QW   S  YP  +P  F V  PT
Sbjct: 103 SSSFFFFVDLLRAYAHAQWHFGSNLYPKHIPVPFFVCIPT 142

>ref|XP_162416.2| SCO-spondin [Mus musculus]
          Length = 3795

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 119  CCPPPHQMPFALPLRPTCLQPTTV 190
            C  PPH+ PF+L L  T   PTT+
Sbjct: 1843 CARPPHRAPFSLVLLTTVAAPTTL 1866



EST assemble image


clone accession position
1 LC084e04_r AV624917 1 174
2 CM043d06_r AV389512 41 253




Chlamydomonas reinhardtii
Kazusa DNA Research Institute