KCC001380A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001380A_C01 KCC001380A_c01
GAAATAATTACCTCTCGCCTGCCACTTTAGCCCCAGAGCACAGTGCTCTCACAACACCCC
TTGCACAGTCCCGACACTTCCACAAAGACAAGAAGGATGCTGGCCGCGAAGACCTGCCCC
GCCCTGCCCGCGCGCGCTGCTCGCGCCAGCGCCCGCGTCGGCCTGCGCCCCGCTTCGGGC
GTGTCGTCGCGCCGCGTGGCCACCAAGGCTATTGAGGACACCAACCTGTTCGTCAACATT
CTGGGCAGTGGCCTGGCCGGCGCTGCCGTCGCGGCCGTGACCACCTTCACCTCTGAGAAC
AAGGACAAGGAGATTGAGCGCATCCAGACGGTGGAGGGCGCGCTGCCCATCGGCGCTGCC
ATCGCCGCTGACGCCATCGTTCACTCCATCCCCGGCCTGAACGTGCTGTTCAGCCTGCTG
CTGGAGCCCACTGGCGCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001380A_C01 KCC001380A_c01
         (439 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_217006.1| PE_PGRS [Mycobacterium tuberculosis H37Rv] gi|7...    47  8e-05
ref|NP_856162.1| PE-PGRS FAMILY PROTEIN [SECOND PART] [Mycobacte...    47  8e-05
ref|NP_854777.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis sub...    47  8e-05
ref|NP_337054.1| PE_PGRS family protein [Mycobacterium tuberculo...    47  8e-05
ref|NP_215607.1| PE_PGRS [Mycobacterium tuberculosis H37Rv] gi|7...    47  8e-05

>ref|NP_217006.1| PE_PGRS [Mycobacterium tuberculosis H37Rv] gi|7441223|pir||A70869
           hypothetical glycine-rich protein Rv2490c -
           Mycobacterium tuberculosis (strain H37RV)
           gi|2791530|emb|CAA16067.1| PE_PGRS [Mycobacterium
           tuberculosis H37Rv]
          Length = 1660

 Score = 46.6 bits (109), Expect = 8e-05
 Identities = 43/116 (37%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQ--RALHRLDALNLLVLVLRGEGGHGRDG 265
           GA G       H  AGDG   G  G+G A G      H  +A      VL  +GG+G DG
Sbjct: 526 GAGGAGGAGGAH--AGDGGAGGAGGNGGAGGAGGNGAHGFNA------VLVSDGGNGGDG 577

Query: 264 SAGQATAQNVDEQVGVLNSLGGHA-ARRHARSGAQADAGA-GASSARGQGGAGLRG 103
            AG           G     GG A A R    G   D GA GA  A G GG+G RG
Sbjct: 578 GAGGRGGD------GGAGGAGGDAPAGRAGSQGVGGDGGAGGAGGAPGNGGSGGRG 627

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 40/129 (31%), Positives = 46/129 (35%), Gaps = 2/129 (1%)
 Frame = -2

Query: 438  GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRG-EGGHGRDGS 262
            GA G         + GDG   G  GDG+A    A       + L L   G  GG G  G 
Sbjct: 962  GAGGNGGDGGNAGRVGDGGAGGNGGDGAAGANGANSGAPGSDALALGQPGGNGGQGDAGQ 1021

Query: 261  AGQATAQNVDEQVGVLNSLGGHAARRHARSGAQADAGAGASSARG-QGGAGLRGQHPSCL 85
            AG A         G     GG         GA  + GAG +   G  GGAG RG +    
Sbjct: 1022 AGGA---------GGAGGAGGAGGSVSGDGGAGGNGGAGGNGGVGASGGAGARGANGIDS 1072

Query: 84   CGSVGTVQG 58
             G  G   G
Sbjct: 1073 IGGTGGAGG 1081

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 37/113 (32%), Positives = 42/113 (36%), Gaps = 7/113 (6%)
 Frame = -2

Query: 414 AEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNV 235
           A   V  G G N G  G+G   G                  G GGHG DG+AG   A   
Sbjct: 465 AHAPVAGGHGGNGGAGGNGGLVGDG----------------GAGGHGGDGAAGAGYADMT 508

Query: 234 DEQVGVLNSLG-----GHAARRHARSGAQA-DAGAGASSAR-GQGGAGLRGQH 97
              +G   + G     G A       GA A D GAG +    G GGAG  G H
Sbjct: 509 AIFLGSSGTPGEDGGNGGAGGAGGAGGAHAGDGGAGGAGGNGGAGGAGGNGAH 561

 Score = 38.9 bits (89), Expect = 0.016
 Identities = 33/96 (34%), Positives = 35/96 (36%)
 Frame = -2

Query: 399  QAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVG 220
            Q GDG N G+ GDG A G        A       L G+GG G  G  G       D   G
Sbjct: 1208 QGGDGGNAGLFGDGGAGGD------GADGTAAEALGGDGGAGGAGGKGGDAGDIGD---G 1258

Query: 219  VLNSLGGHAARRHARSGAQADAGAGASSARGQGGAG 112
                 GG  A         A    GA  A G GGAG
Sbjct: 1259 GDGGKGGDGAHGALGGLTVAGGNGGAGGAGGAGGAG 1294

 Score = 37.7 bits (86), Expect = 0.036
 Identities = 36/101 (35%), Positives = 42/101 (40%), Gaps = 2/101 (1%)
 Frame = -2

Query: 399 QAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVD--EQ 226
           + G G N G+ GDG A G        A    V         G DG+ G  + Q  +  E 
Sbjct: 694 KGGAGGNGGLVGDGGAGGDGGSGAAGANGANV---------GEDGADGTLSGQPGEGSEA 744

Query: 225 VGVLNSLGGHAARRHARSGAQADAGAGASSARGQGGAGLRG 103
            G    +GG  A      GA  D GAG SSA G GG G RG
Sbjct: 745 NGGQGGVGGGGA-----GGAGGDGGAG-SSALGSGGNGGRG 779

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 32/98 (32%), Positives = 34/98 (34%), Gaps = 2/98 (2%)
 Frame = -2

Query: 399  QAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVG 220
            Q G     GV GDG   G                  G GG G  GS G       D   G
Sbjct: 873  QVGSHGVGGVGGDGGLGGAG----------------GNGGDGGHGSDGGDGGDGGDPGAG 916

Query: 219  VLNSLGGHAAR-RHARSGAQA-DAGAGASSARGQGGAG 112
             L  LGG +     A SG  A D G G+    G GG G
Sbjct: 917  GLGGLGGDSGNGTRAASGVDASDHGPGSGGNGGNGGNG 954

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 27/89 (30%), Positives = 34/89 (37%)
 Frame = -2

Query: 393 GDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVGVL 214
           GDG + G  G G A G  A   +       +   G GG G  G+   AT    +   G  
Sbjct: 640 GDGGDPGAGGKGGAGGAGATEGVTGATGATVHSGGNGGKG--GNGADATVAGANGGKGGA 697

Query: 213 NSLGGHAARRHARSGAQADAGAGASSARG 127
              GG         GA  D G+GA+ A G
Sbjct: 698 GGNGGLV----GDGGAGGDGGSGAAGANG 722

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 34/109 (31%), Positives = 38/109 (34%), Gaps = 1/109 (0%)
 Frame = -2

Query: 393  GDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVGVL 214
            G G   G  GDG A G  AL              G GG+G  G AGQA         G  
Sbjct: 752  GGGGAGGAGGDGGA-GSSAL--------------GSGGNGGRGDAGQAGGAG---GAGGA 793

Query: 213  NSLGGHAARRHARSGAQADAGAGASSARGQGGA-GLRGQHPSCLCGSVG 70
               GG  +      G     GAG + A G GG  G  G   +   G  G
Sbjct: 794  GGAGGSVSGDGGPGGKGGAGGAGGAGASGGGGGKGASGADSAEAVGGAG 842

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
 Frame = -2

Query: 438  GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSA 259
            G +G Q  A +    G G   GV G G A G   ++             G+GG+G  G A
Sbjct: 1304 GGAGGQGGAGRGGSPGGG--GGVGGHGGAGGDAGMNGGGGTG-------GQGGNGAAGGA 1354

Query: 258  GQATAQNV------DEQVGVLNSLGGHAARRHARSGAQADAGAGA-SSARGQGGAGLRG 103
            G +   ++      D   G     GG       ++G   D GAG    A G GG G+ G
Sbjct: 1355 GWSPDSDLKGFDGFDGGSGGAGGDGGAGGAGGTQTGDGGDGGAGGLGGAGGVGGNGVDG 1413

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 43/155 (27%), Positives = 53/155 (33%), Gaps = 32/155 (20%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGV---------NDGVSGDGSADGQRALHRLDALNLLVLVLR-- 292
           GA+G+   A      GDG          N GV G G A G        +  LL  V R  
Sbjct: 329 GATGINGPAGISAAGGDGGAGGNGGAGGNGGVGGAGGAGG--------SAGLLGYVGRAG 380

Query: 291 --------------GEGGHGRDGSA------GQATAQNVDEQVGVLNSLGGHAARRHARS 172
                         G+GG G +G +      G A     D  +G     GG +    AR+
Sbjct: 381 DGGAGGGGGLGGAPGDGGAGGNGGSWLAAGDGGAGGHGGDPGLGGAGGAGGASGGAGARA 440

Query: 171 GAQA-DAGAGASSARGQGGAGLRGQHPSCLCGSVG 70
           GA    AG     + G GG G  G H     G  G
Sbjct: 441 GANGLAAGNDGPVSGGNGGKGGNGAHAPVAGGHGG 475

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 35/123 (28%), Positives = 38/123 (30%), Gaps = 11/123 (8%)
 Frame = -2

Query: 438  GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSA 259
            G  G    +  H +AG G   G  GDG                      G GGHG DG+ 
Sbjct: 1508 GQGGFGSTSGAHGKAGFGAPGGDGGDG----------------------GNGGHGGDGNG 1545

Query: 258  GQATA-QNVDEQVGVLNSLGGHAARRHARSGAQADAGAGASS----------ARGQGGAG 112
              A A        G    LGG      A  G   D G G S             G GG G
Sbjct: 1546 SFADAGDGGPGGNGGNGGLGGAGRDGGAPGGDGGDGGTGGSGGFGAPPPRSIGGGDGGDG 1605

Query: 111  LRG 103
             RG
Sbjct: 1606 GRG 1608

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 30/103 (29%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
 Frame = -2

Query: 393  GDGVNDGVSGDGSADGQRALHRLDALNLLVLV--------LRGEGGHGRDGSAGQATAQN 238
            G G N GV   G A G R  + +D++                G GGHG DG  G A    
Sbjct: 1049 GAGGNGGVGASGGA-GARGANGIDSIGGTGGAGGGGGDGGAGGVGGHGGDGGVGGAAPS- 1106

Query: 237  VDEQVGVLNSLGGHAARRHARSGAQADAGAGASSARGQGGAGL 109
                     ++G H        G    AG G   A G GG G+
Sbjct: 1107 --------GTVGSHGTGGVGGDGGLGGAG-GVGGAGGNGGIGI 1140

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 37/121 (30%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLL--VLVLRGEGGHGRD- 268
           G  G    A     AG   + GV GDG A G               +    G+GG G D 
Sbjct: 583 GGDGGAGGAGGDAPAGRAGSQGVGGDGGAGGAGGAPGNGGSGGRGDMAFKDGDGGAGGDG 642

Query: 267 ---GSAGQATAQNVDEQVGVLNSLGG--HAARRHARSGAQADAG-AGASSARGQGGAGLR 106
              G+ G+  A       GV  + G   H+     + G  ADA  AGA+   G+GGAG  
Sbjct: 643 GDPGAGGKGGAGGAGATEGVTGATGATVHSGGNGGKGGNGADATVAGANG--GKGGAGGN 700

Query: 105 G 103
           G
Sbjct: 701 G 701

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 33/115 (28%), Positives = 37/115 (31%), Gaps = 13/115 (11%)
 Frame = -2

Query: 399  QAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGR-------------DGSA 259
            + GD  + G  GDG   G  A   L  L     V  G GG G              DG  
Sbjct: 1248 KGGDAGDIGDGGDGGKGGDGAHGALGGLT----VAGGNGGAGGAGGAGGAGGAFLGDGGN 1303

Query: 258  GQATAQNVDEQVGVLNSLGGHAARRHARSGAQADAGAGASSARGQGGAGLRGQHP 94
            G A  Q    + G     GG      A   A  + G G     G G AG  G  P
Sbjct: 1304 GGAGGQGGAGRGGSPGGGGGVGGHGGAGGDAGMNGGGGTGGQGGNGAAGGAGWSP 1358

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 38/120 (31%), Positives = 42/120 (34%), Gaps = 6/120 (5%)
 Frame = -2

Query: 438  GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSA 259
            G +G    A     AG+  N GV GDG   G       DA         G GG G DG  
Sbjct: 1436 GGAGGNGGAGGSAPAGEVGNRGVGGDGGDGGSGG----DA---------GNGGLGGDGFT 1482

Query: 258  ------GQATAQNVDEQVGVLNSLGGHAARRHARSGAQADAGAGASSARGQGGAGLRGQH 97
                  G+      D   G     GG      + SGA   AG GA    G GG G  G H
Sbjct: 1483 YLADFDGEPGGDGGDGGDGGWGRPGGQGG-FGSTSGAHGKAGFGAPG--GDGGDGGNGGH 1539

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 38/132 (28%), Positives = 44/132 (32%), Gaps = 20/132 (15%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRD--- 268
           G  G   +A      G G   G  GDG A G          + L     G GGHG D   
Sbjct: 371 GLLGYVGRAGDGGAGGGGGLGGAPGDGGAGGNGG-------SWLAAGDGGAGGHGGDPGL 423

Query: 267 ---GSAGQAT-------------AQNVDEQVGVLNSLGGHAARRHARSGAQADAGAGASS 136
              G AG A+             A N     G     GG+ A      G   + GAG + 
Sbjct: 424 GGAGGAGGASGGAGARAGANGLAAGNDGPVSGGNGGKGGNGAHAPVAGGHGGNGGAGGNG 483

Query: 135 AR-GQGGAGLRG 103
              G GGAG  G
Sbjct: 484 GLVGDGGAGGHG 495

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 33/97 (34%), Positives = 38/97 (39%)
 Frame = -2

Query: 393 GDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVGVL 214
           GDG   GV G+G   G   L    A    V  + G GG G  G AG A A  ++   G+ 
Sbjct: 284 GDGGAGGVGGNGGRGGW-LLGNGGAGG--VGGVGGAGGAGAAGGAGGAGATGINGPAGI- 339

Query: 213 NSLGGHAARRHARSGAQADAGAGASSARGQGGAGLRG 103
                        S A  D GAG     G GGAG  G
Sbjct: 340 -------------SAAGGDGGAG-----GNGGAGGNG 358

>ref|NP_856162.1| PE-PGRS FAMILY PROTEIN [SECOND PART] [Mycobacterium bovis subsp.
           bovis AF2122/97] gi|31619262|emb|CAD97378.1| PE-PGRS
           FAMILY PROTEIN [SECOND PART] [Mycobacterium bovis subsp.
           bovis AF2122/97]
          Length = 1150

 Score = 46.6 bits (109), Expect = 8e-05
 Identities = 43/116 (37%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQ--RALHRLDALNLLVLVLRGEGGHGRDG 265
           GA G       H  AGDG   G  G+G A G      H  +A      VL  +GG+G DG
Sbjct: 20  GAGGAGGAGGAH--AGDGGAGGAGGNGGAGGAGGNGAHGFNA------VLVSDGGNGGDG 71

Query: 264 SAGQATAQNVDEQVGVLNSLGGHA-ARRHARSGAQADAGA-GASSARGQGGAGLRG 103
            AG           G     GG A A R    G   D GA GA  A G GG+G RG
Sbjct: 72  GAGGRGGD------GGAGGAGGDAPAGRAGSQGVGGDGGAGGAGGAPGNGGSGGRG 121

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 41/128 (32%), Positives = 47/128 (36%), Gaps = 1/128 (0%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSA 259
           GA G         + GDG   G  GDG+A    A     A     L L   GG+G  G A
Sbjct: 456 GAGGNGGDGGNAGRVGDGGAGGNGGDGAAGANGA--NSGAPGSDALALGQPGGNGGQGDA 513

Query: 258 GQATAQNVDEQVGVLNSLGGHAARRHARSGAQADAGAGASSARG-QGGAGLRGQHPSCLC 82
           GQA         G     GG         GA  + GAG +   G  GGAG RG +     
Sbjct: 514 GQA---------GGAGGAGGAGGSVSGDGGAGGNGGAGGNGGVGASGGAGARGANGIDSI 564

Query: 81  GSVGTVQG 58
           G  G   G
Sbjct: 565 GGTGGAGG 572

 Score = 38.9 bits (89), Expect = 0.016
 Identities = 33/96 (34%), Positives = 35/96 (36%)
 Frame = -2

Query: 399 QAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVG 220
           Q GDG N G+ GDG A G        A       L G+GG G  G  G       D   G
Sbjct: 699 QGGDGGNAGLFGDGGAGGD------GADGTAAEALGGDGGAGGAGGKGGDAGDIGD---G 749

Query: 219 VLNSLGGHAARRHARSGAQADAGAGASSARGQGGAG 112
                GG  A         A    GA  A G GGAG
Sbjct: 750 GDGGKGGDGAHGALGGLTVAGGNGGAGGAGGAGGAG 785

 Score = 37.7 bits (86), Expect = 0.036
 Identities = 36/101 (35%), Positives = 42/101 (40%), Gaps = 2/101 (1%)
 Frame = -2

Query: 399 QAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVD--EQ 226
           + G G N G+ GDG A G        A    V         G DG+ G  + Q  +  E 
Sbjct: 188 KGGAGGNGGLVGDGGAGGDGGSGAAGANGANV---------GEDGADGTLSGQPGEGSEA 238

Query: 225 VGVLNSLGGHAARRHARSGAQADAGAGASSARGQGGAGLRG 103
            G    +GG  A      GA  D GAG SSA G GG G RG
Sbjct: 239 NGGQGGVGGGGA-----GGAGGDGGAG-SSALGSGGNGGRG 273

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 32/98 (32%), Positives = 34/98 (34%), Gaps = 2/98 (2%)
 Frame = -2

Query: 399 QAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVG 220
           Q G     GV GDG   G                  G GG G  GS G       D   G
Sbjct: 367 QVGSHGVGGVGGDGGLGGAG----------------GNGGDGGHGSDGGDGGDGGDPGAG 410

Query: 219 VLNSLGGHAAR-RHARSGAQA-DAGAGASSARGQGGAG 112
            L  LGG +     A SG  A D G G+    G GG G
Sbjct: 411 GLGGLGGDSGNGTRAASGVDASDHGPGSGGNGGNGGNG 448

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 27/89 (30%), Positives = 34/89 (37%)
 Frame = -2

Query: 393 GDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVGVL 214
           GDG + G  G G A G  A   +       +   G GG G  G+   AT    +   G  
Sbjct: 134 GDGGDPGAGGKGGAGGAGATEGVTGATGATVHSGGNGGKG--GNGADATVAGANGGKGGA 191

Query: 213 NSLGGHAARRHARSGAQADAGAGASSARG 127
              GG         GA  D G+GA+ A G
Sbjct: 192 GGNGGLV----GDGGAGGDGGSGAAGANG 216

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 34/109 (31%), Positives = 38/109 (34%), Gaps = 1/109 (0%)
 Frame = -2

Query: 393 GDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVGVL 214
           G G   G  GDG A G  AL              G GG+G  G AGQA         G  
Sbjct: 246 GGGGAGGAGGDGGA-GSSAL--------------GSGGNGGRGDAGQAGGAG---GAGGA 287

Query: 213 NSLGGHAARRHARSGAQADAGAGASSARGQGGA-GLRGQHPSCLCGSVG 70
              GG  +      G     GAG + A G GG  G  G   +   G  G
Sbjct: 288 GGAGGSVSGDGGPGGKGGAGGAGGAGASGGGGGKGASGADSAEAVGGAG 336

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
 Frame = -2

Query: 438  GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSA 259
            G +G Q  A +    G G   GV G G A G   ++             G+GG+G  G A
Sbjct: 795  GGAGGQGGAGRGGSPGGG--GGVGGHGGAGGDAGMNGGGGTG-------GQGGNGAAGGA 845

Query: 258  GQATAQNV------DEQVGVLNSLGGHAARRHARSGAQADAGAGA-SSARGQGGAGLRG 103
            G +   ++      D   G     GG       ++G   D GAG    A G GG G+ G
Sbjct: 846  GWSPDSDLKGFDGFDGGSGGAGGDGGAGGAGGTQTGDGGDGGAGGLGGAGGVGGNGVDG 904

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 30/103 (29%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
 Frame = -2

Query: 393 GDGVNDGVSGDGSADGQRALHRLDALNLLVLV--------LRGEGGHGRDGSAGQATAQN 238
           G G N GV   G A G R  + +D++                G GGHG DG  G A    
Sbjct: 540 GAGGNGGVGASGGA-GARGANGIDSIGGTGGAGGGGGDGGAGGVGGHGGDGGVGGAAPS- 597

Query: 237 VDEQVGVLNSLGGHAARRHARSGAQADAGAGASSARGQGGAGL 109
                    ++G H        G    AG G   A G GG G+
Sbjct: 598 --------GTVGSHGTGGVGGDGGLGGAG-GVGGAGGNGGIGI 631

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 35/123 (28%), Positives = 38/123 (30%), Gaps = 11/123 (8%)
 Frame = -2

Query: 438  GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSA 259
            G  G    +  H +AG G   G  GDG                      G GGHG DG+ 
Sbjct: 998  GQGGFGSTSGAHGKAGFGAPGGDGGDG----------------------GNGGHGGDGNG 1035

Query: 258  GQATA-QNVDEQVGVLNSLGGHAARRHARSGAQADAGAGASS----------ARGQGGAG 112
              A A        G    LGG      A  G   D G G S             G GG G
Sbjct: 1036 SFADAGDGGPGGNGGNGGLGGAGRDGGAPGGDGGDGGTGGSGGFGAPPPRSIGGGDGGDG 1095

Query: 111  LRG 103
             RG
Sbjct: 1096 GRG 1098

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 37/121 (30%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLL--VLVLRGEGGHGRD- 268
           G  G    A     AG   + GV GDG A G               +    G+GG G D 
Sbjct: 77  GGDGGAGGAGGDAPAGRAGSQGVGGDGGAGGAGGAPGNGGSGGRGDMAFKDGDGGAGGDG 136

Query: 267 ---GSAGQATAQNVDEQVGVLNSLGG--HAARRHARSGAQADAG-AGASSARGQGGAGLR 106
              G+ G+  A       GV  + G   H+     + G  ADA  AGA+   G+GGAG  
Sbjct: 137 GDPGAGGKGGAGGAGATEGVTGATGATVHSGGNGGKGGNGADATVAGANG--GKGGAGGN 194

Query: 105 G 103
           G
Sbjct: 195 G 195

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 33/115 (28%), Positives = 37/115 (31%), Gaps = 13/115 (11%)
 Frame = -2

Query: 399  QAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGR-------------DGSA 259
            + GD  + G  GDG   G  A   L  L     V  G GG G              DG  
Sbjct: 739  KGGDAGDIGDGGDGGKGGDGAHGALGGLT----VAGGNGGAGGAGGAGGAGGAFLGDGGN 794

Query: 258  GQATAQNVDEQVGVLNSLGGHAARRHARSGAQADAGAGASSARGQGGAGLRGQHP 94
            G A  Q    + G     GG      A   A  + G G     G G AG  G  P
Sbjct: 795  GGAGGQGGAGRGGSPGGGGGVGGHGGAGGDAGMNGGGGTGGQGGNGAAGGAGWSP 849

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 38/120 (31%), Positives = 42/120 (34%), Gaps = 6/120 (5%)
 Frame = -2

Query: 438  GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSA 259
            G +G    A     AG+  N GV GDG   G       DA         G GG G DG  
Sbjct: 926  GGAGGNGGAGGSAPAGEVGNRGVGGDGGDGGSGG----DA---------GNGGLGGDGFT 972

Query: 258  ------GQATAQNVDEQVGVLNSLGGHAARRHARSGAQADAGAGASSARGQGGAGLRGQH 97
                  G+      D   G     GG      + SGA   AG GA    G GG G  G H
Sbjct: 973  YLADFDGEPGGDGGDGGDGGWGRPGGQGG-FGSTSGAHGKAGFGAPG--GDGGDGGNGGH 1029

>ref|NP_854777.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis subsp. bovis AF2122/97]
           gi|31617872|emb|CAD93982.1| PE-PGRS FAMILY PROTEIN
           [Mycobacterium bovis subsp. bovis AF2122/97]
          Length = 850

 Score = 46.6 bits (109), Expect = 8e-05
 Identities = 41/118 (34%), Positives = 47/118 (39%), Gaps = 6/118 (5%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSA 259
           G SGL   A      G G + G  G G A G+       A  LLV    G GGHG DG A
Sbjct: 415 GGSGLSGNAN----GGAGGDSGRGGTGGAGGEGG-----AAGLLV----GTGGHGGDGGA 461

Query: 258 GQATAQNVDEQVGVLNSLGGHAARRHA--RSGAQADAGAGASSAR----GQGGAGLRG 103
           G A  +  D        + G   R  A    G+  D G GA+       G GGAG  G
Sbjct: 462 GGAAVKGGDGGAAAGTGIAGAGGRGGAGGSGGSGGDGGGGAAGPAGWLFGDGGAGGNG 519

 Score = 36.6 bits (83), Expect = 0.081
 Identities = 40/134 (29%), Positives = 47/134 (34%), Gaps = 10/134 (7%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGVND----------GVSGDGSADGQRALHRLDALNLLVLVLRG 289
           GA G    A   + AG+GV+           G  GDG A G     RL  +        G
Sbjct: 346 GAGGHGAAAGNGLAAGNGVSSSGGGGAGGTGGAGGDGGAGGAGGNARLWGVG-------G 398

Query: 288 EGGHGRDGSAGQATAQNVDEQVGVLNSLGGHAARRHARSGAQADAGAGASSARGQGGAGL 109
            GG G DG AG A  +            GG        SG   +A  GA    G+GG G 
Sbjct: 399 AGGAGGDGGAGGAGGK------------GG--------SGLSGNANGGAGGDSGRGGTGG 438

Query: 108 RGQHPSCLCGSVGT 67
            G         VGT
Sbjct: 439 AGGEGGAAGLLVGT 452

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 40/134 (29%), Positives = 49/134 (35%), Gaps = 11/134 (8%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSA 259
           G++GL          G+G +  V+  GSA G         L        G GG+G  G A
Sbjct: 217 GSAGLWGTGGAGGDGGNGRSGPVNVAGSAGGNGGAGGAAGL----FGDAGAGGNGGKGGA 272

Query: 258 GQATAQ----NVDEQVGVLNSLGGHA-------ARRHARSGAQADAGAGASSARGQGGAG 112
           G A         D   G     GGHA       A  +  SG    AG   + A G GGAG
Sbjct: 273 GGAAFSINFTAGDGGAGGAGGSGGHALLWGAGGAGGNGGSGGTGGAGGSTAGAGGNGGAG 332

Query: 111 LRGQHPSCLCGSVG 70
             G     L G+ G
Sbjct: 333 GGGGTGGLLFGNGG 346

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 33/95 (34%), Positives = 39/95 (40%), Gaps = 1/95 (1%)
 Frame = -2

Query: 393 GDGVNDGVSG-DGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVGV 217
           G  V  GV+G +G A G   L              G GG G DG  G++   NV    G 
Sbjct: 201 GTSVIPGVAGGNGGAGGSAGLW-------------GTGGAGGDGGNGRSGPVNVAGSAGG 247

Query: 216 LNSLGGHAARRHARSGAQADAGAGASSARGQGGAG 112
               GG A       G   DAGAG +   G+GGAG
Sbjct: 248 NGGAGGAA-------GLFGDAGAGGN--GGKGGAG 273

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 33/115 (28%), Positives = 40/115 (34%), Gaps = 2/115 (1%)
 Frame = -2

Query: 393 GDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVGVL 214
           GDG N G   DG   G               +L G GG+G     G +T   V       
Sbjct: 123 GDGANGGPGQDGGPGG---------------LLYGNGGNG-----GTSTTAGV------- 155

Query: 213 NSLGGHAARRHARSGAQADAGAGASSARGQGGAG--LRGQHPSCLCGSVGTVQGV 55
              GG+           A  G GA +A G GGAG  L G   +   G    + GV
Sbjct: 156 --AGGNGGAAGLIGNGGAGGGGGAGAAGGNGGAGGWLYGNGGAGGAGGTSVIPGV 208

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 32/107 (29%), Positives = 42/107 (38%), Gaps = 10/107 (9%)
 Frame = -2

Query: 393 GDGVNDG-VSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVGV 217
           G+G   G + G+G A GQ A           +     GG+G  G  G +     +  +  
Sbjct: 551 GNGATGGWLYGNGGAGGQGATAGAGGAGANGVSSTNGGGNGGIGGTGGSGGAGGNAGLLG 610

Query: 216 LNSLGGHAARRHA--RSGA------QADAGAGASSA-RGQGGAGLRG 103
           +   GGH A   A  R GA       +D GAG      G GGAG  G
Sbjct: 611 VGGAGGHGASGGAGDRGGAGGTGFISSDGGAGGDGGDGGNGGAGGTG 657

>ref|NP_337054.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
           gi|13882294|gb|AAK46868.1| PE_PGRS family protein
           [Mycobacterium tuberculosis CDC1551]
          Length = 1665

 Score = 46.6 bits (109), Expect = 8e-05
 Identities = 43/116 (37%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQ--RALHRLDALNLLVLVLRGEGGHGRDG 265
           GA G       H  AGDG   G  G+G A G      H  +A      VL  +GG+G DG
Sbjct: 531 GAGGAGGAGGAH--AGDGGAGGAGGNGGAGGAGGNGAHGFNA------VLVSDGGNGGDG 582

Query: 264 SAGQATAQNVDEQVGVLNSLGGHA-ARRHARSGAQADAGA-GASSARGQGGAGLRG 103
            AG           G     GG A A R    G   D GA GA  A G GG+G RG
Sbjct: 583 GAGGRGGD------GGAGGAGGDAPAGRAGSQGVGGDGGAGGAGGAPGNGGSGGRG 632

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 40/129 (31%), Positives = 46/129 (35%), Gaps = 2/129 (1%)
 Frame = -2

Query: 438  GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRG-EGGHGRDGS 262
            GA G         + GDG   G  GDG+A    A       + L L   G  GG G  G 
Sbjct: 967  GAGGNGGDGGNAGRVGDGGAGGNGGDGAAGANGANSGAPGSDALALGQPGGNGGQGDAGQ 1026

Query: 261  AGQATAQNVDEQVGVLNSLGGHAARRHARSGAQADAGAGASSARG-QGGAGLRGQHPSCL 85
            AG A         G     GG         GA  + GAG +   G  GGAG RG +    
Sbjct: 1027 AGGA---------GGAGGAGGAGGSVSGDGGAGGNGGAGGNGGVGASGGAGARGANGIDS 1077

Query: 84   CGSVGTVQG 58
             G  G   G
Sbjct: 1078 IGGTGGAGG 1086

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 37/113 (32%), Positives = 42/113 (36%), Gaps = 7/113 (6%)
 Frame = -2

Query: 414 AEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNV 235
           A   V  G G N G  G+G   G                  G GGHG DG+AG   A   
Sbjct: 470 AHAPVAGGHGGNGGAGGNGGLVGDG----------------GAGGHGGDGAAGAGYADMT 513

Query: 234 DEQVGVLNSLG-----GHAARRHARSGAQA-DAGAGASSAR-GQGGAGLRGQH 97
              +G   + G     G A       GA A D GAG +    G GGAG  G H
Sbjct: 514 AIFLGSSGTPGEDGGNGGAGGAGGAGGAHAGDGGAGGAGGNGGAGGAGGNGAH 566

 Score = 38.9 bits (89), Expect = 0.016
 Identities = 33/96 (34%), Positives = 35/96 (36%)
 Frame = -2

Query: 399  QAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVG 220
            Q GDG N G+ GDG A G        A       L G+GG G  G  G       D   G
Sbjct: 1213 QGGDGGNAGLFGDGGAGGD------GADGTAAEALGGDGGAGGAGGKGGDAGDIGD---G 1263

Query: 219  VLNSLGGHAARRHARSGAQADAGAGASSARGQGGAG 112
                 GG  A         A    GA  A G GGAG
Sbjct: 1264 GDGGKGGDGAHGALGGLTVAGGNGGAGGAGGAGGAG 1299

 Score = 37.7 bits (86), Expect = 0.036
 Identities = 36/101 (35%), Positives = 42/101 (40%), Gaps = 2/101 (1%)
 Frame = -2

Query: 399 QAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVD--EQ 226
           + G G N G+ GDG A G        A    V         G DG+ G  + Q  +  E 
Sbjct: 699 KGGAGGNGGLVGDGGAGGDGGSGAAGANGANV---------GEDGADGTLSGQPGEGSEA 749

Query: 225 VGVLNSLGGHAARRHARSGAQADAGAGASSARGQGGAGLRG 103
            G    +GG  A      GA  D GAG SSA G GG G RG
Sbjct: 750 NGGQGGVGGGGA-----GGAGGDGGAG-SSALGSGGNGGRG 784

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 32/98 (32%), Positives = 34/98 (34%), Gaps = 2/98 (2%)
 Frame = -2

Query: 399  QAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVG 220
            Q G     GV GDG   G                  G GG G  GS G       D   G
Sbjct: 878  QVGSHGVGGVGGDGGLGGAG----------------GNGGDGGHGSDGGDGGDGGDPGAG 921

Query: 219  VLNSLGGHAAR-RHARSGAQA-DAGAGASSARGQGGAG 112
             L  LGG +     A SG  A D G G+    G GG G
Sbjct: 922  GLGGLGGDSGNGTRAASGVDASDHGPGSGGNGGNGGNG 959

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 27/89 (30%), Positives = 34/89 (37%)
 Frame = -2

Query: 393 GDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVGVL 214
           GDG + G  G G A G  A   +       +   G GG G  G+   AT    +   G  
Sbjct: 645 GDGGDPGAGGKGGAGGAGATEGVTGATGATVHSGGNGGKG--GNGADATVAGANGGKGGA 702

Query: 213 NSLGGHAARRHARSGAQADAGAGASSARG 127
              GG         GA  D G+GA+ A G
Sbjct: 703 GGNGGLV----GDGGAGGDGGSGAAGANG 727

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 34/109 (31%), Positives = 38/109 (34%), Gaps = 1/109 (0%)
 Frame = -2

Query: 393  GDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVGVL 214
            G G   G  GDG A G  AL              G GG+G  G AGQA         G  
Sbjct: 757  GGGGAGGAGGDGGA-GSSAL--------------GSGGNGGRGDAGQAGGAG---GAGGA 798

Query: 213  NSLGGHAARRHARSGAQADAGAGASSARGQGGA-GLRGQHPSCLCGSVG 70
               GG  +      G     GAG + A G GG  G  G   +   G  G
Sbjct: 799  GGAGGSVSGDGGPGGKGGAGGAGGAGASGGGGGKGASGADSAEAVGGAG 847

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
 Frame = -2

Query: 438  GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSA 259
            G +G Q  A +    G G   GV G G A G   ++             G+GG+G  G A
Sbjct: 1309 GGAGGQGGAGRGGSPGGG--GGVGGHGGAGGDAGMNGGGGTG-------GQGGNGAAGGA 1359

Query: 258  GQATAQNV------DEQVGVLNSLGGHAARRHARSGAQADAGAGA-SSARGQGGAGLRG 103
            G +   ++      D   G     GG       ++G   D GAG    A G GG G+ G
Sbjct: 1360 GWSPDSDLKGFDGFDGGSGGAGGDGGAGGAGGTQTGDGGDGGAGGLGGAGGVGGNGVDG 1418

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 43/155 (27%), Positives = 53/155 (33%), Gaps = 32/155 (20%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGV---------NDGVSGDGSADGQRALHRLDALNLLVLVLR-- 292
           GA+G+   A      GDG          N GV G G A G        +  LL  V R  
Sbjct: 334 GATGINGPAGISAAGGDGGAGGNGGAGGNGGVGGAGGAGG--------SAGLLGYVGRAG 385

Query: 291 --------------GEGGHGRDGSA------GQATAQNVDEQVGVLNSLGGHAARRHARS 172
                         G+GG G +G +      G A     D  +G     GG +    AR+
Sbjct: 386 DGGAGGGGGLGGAPGDGGAGGNGGSWLAAGDGGAGGHGGDPGLGGAGGAGGASGGAGARA 445

Query: 171 GAQA-DAGAGASSARGQGGAGLRGQHPSCLCGSVG 70
           GA    AG     + G GG G  G H     G  G
Sbjct: 446 GANGLAAGNDGPVSGGNGGKGGNGAHAPVAGGHGG 480

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 35/123 (28%), Positives = 38/123 (30%), Gaps = 11/123 (8%)
 Frame = -2

Query: 438  GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSA 259
            G  G    +  H +AG G   G  GDG                      G GGHG DG+ 
Sbjct: 1513 GQGGFGSTSGAHGKAGFGAPGGDGGDG----------------------GNGGHGGDGNG 1550

Query: 258  GQATA-QNVDEQVGVLNSLGGHAARRHARSGAQADAGAGASS----------ARGQGGAG 112
              A A        G    LGG      A  G   D G G S             G GG G
Sbjct: 1551 SFADAGDGGPGGNGGNGGLGGAGRDGGAPGGDGGDGGTGGSGGFGAPPPRSIGGGDGGDG 1610

Query: 111  LRG 103
             RG
Sbjct: 1611 GRG 1613

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 30/103 (29%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
 Frame = -2

Query: 393  GDGVNDGVSGDGSADGQRALHRLDALNLLVLV--------LRGEGGHGRDGSAGQATAQN 238
            G G N GV   G A G R  + +D++                G GGHG DG  G A    
Sbjct: 1054 GAGGNGGVGASGGA-GARGANGIDSIGGTGGAGGGGGDGGAGGVGGHGGDGGVGGAAPS- 1111

Query: 237  VDEQVGVLNSLGGHAARRHARSGAQADAGAGASSARGQGGAGL 109
                     ++G H        G    AG G   A G GG G+
Sbjct: 1112 --------GTVGSHGTGGVGGDGGLGGAG-GVGGAGGNGGIGI 1145

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 37/121 (30%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLL--VLVLRGEGGHGRD- 268
           G  G    A     AG   + GV GDG A G               +    G+GG G D 
Sbjct: 588 GGDGGAGGAGGDAPAGRAGSQGVGGDGGAGGAGGAPGNGGSGGRGDMAFKDGDGGAGGDG 647

Query: 267 ---GSAGQATAQNVDEQVGVLNSLGG--HAARRHARSGAQADAG-AGASSARGQGGAGLR 106
              G+ G+  A       GV  + G   H+     + G  ADA  AGA+   G+GGAG  
Sbjct: 648 GDPGAGGKGGAGGAGATEGVTGATGATVHSGGNGGKGGNGADATVAGANG--GKGGAGGN 705

Query: 105 G 103
           G
Sbjct: 706 G 706

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 33/115 (28%), Positives = 37/115 (31%), Gaps = 13/115 (11%)
 Frame = -2

Query: 399  QAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGR-------------DGSA 259
            + GD  + G  GDG   G  A   L  L     V  G GG G              DG  
Sbjct: 1253 KGGDAGDIGDGGDGGKGGDGAHGALGGLT----VAGGNGGAGGAGGAGGAGGAFLGDGGN 1308

Query: 258  GQATAQNVDEQVGVLNSLGGHAARRHARSGAQADAGAGASSARGQGGAGLRGQHP 94
            G A  Q    + G     GG      A   A  + G G     G G AG  G  P
Sbjct: 1309 GGAGGQGGAGRGGSPGGGGGVGGHGGAGGDAGMNGGGGTGGQGGNGAAGGAGWSP 1363

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 38/120 (31%), Positives = 42/120 (34%), Gaps = 6/120 (5%)
 Frame = -2

Query: 438  GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSA 259
            G +G    A     AG+  N GV GDG   G       DA         G GG G DG  
Sbjct: 1441 GGAGGNGGAGGSAPAGEVGNRGVGGDGGDGGSGG----DA---------GNGGLGGDGFT 1487

Query: 258  ------GQATAQNVDEQVGVLNSLGGHAARRHARSGAQADAGAGASSARGQGGAGLRGQH 97
                  G+      D   G     GG      + SGA   AG GA    G GG G  G H
Sbjct: 1488 YLADFDGEPGGDGGDGGDGGWGRPGGQGG-FGSTSGAHGKAGFGAPG--GDGGDGGNGGH 1544

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 38/132 (28%), Positives = 44/132 (32%), Gaps = 20/132 (15%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRD--- 268
           G  G   +A      G G   G  GDG A G          + L     G GGHG D   
Sbjct: 376 GLLGYVGRAGDGGAGGGGGLGGAPGDGGAGGNGG-------SWLAAGDGGAGGHGGDPGL 428

Query: 267 ---GSAGQAT-------------AQNVDEQVGVLNSLGGHAARRHARSGAQADAGAGASS 136
              G AG A+             A N     G     GG+ A      G   + GAG + 
Sbjct: 429 GGAGGAGGASGGAGARAGANGLAAGNDGPVSGGNGGKGGNGAHAPVAGGHGGNGGAGGNG 488

Query: 135 AR-GQGGAGLRG 103
              G GGAG  G
Sbjct: 489 GLVGDGGAGGHG 500

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 33/97 (34%), Positives = 38/97 (39%)
 Frame = -2

Query: 393 GDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVGVL 214
           GDG   GV G+G   G   L    A    V  + G GG G  G AG A A  ++   G+ 
Sbjct: 289 GDGGAGGVGGNGGRGGW-LLGNGGAGG--VGGVGGAGGAGAAGGAGGAGATGINGPAGI- 344

Query: 213 NSLGGHAARRHARSGAQADAGAGASSARGQGGAGLRG 103
                        S A  D GAG     G GGAG  G
Sbjct: 345 -------------SAAGGDGGAG-----GNGGAGGNG 363

>ref|NP_215607.1| PE_PGRS [Mycobacterium tuberculosis H37Rv] gi|7446017|pir||A70896
           hypothetical glycine-rich protein Rv1091 - Mycobacterium
           tuberculosis (strain H37RV) gi|2896728|emb|CAA17207.1|
           PE_PGRS [Mycobacterium tuberculosis H37Rv]
          Length = 853

 Score = 46.6 bits (109), Expect = 8e-05
 Identities = 41/118 (34%), Positives = 47/118 (39%), Gaps = 6/118 (5%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSA 259
           G SGL   A      G G + G  G G A G+       A  LLV    G GGHG DG A
Sbjct: 415 GGSGLSGNAN----GGAGGDSGRGGTGGAGGEGG-----AAGLLV----GTGGHGGDGGA 461

Query: 258 GQATAQNVDEQVGVLNSLGGHAARRHA--RSGAQADAGAGASSAR----GQGGAGLRG 103
           G A  +  D        + G   R  A    G+  D G GA+       G GGAG  G
Sbjct: 462 GGAAVKGGDGGAAAGTGIAGAGGRGGAGGSGGSGGDGGGGAAGPAGWLFGDGGAGGNG 519

 Score = 36.6 bits (83), Expect = 0.081
 Identities = 40/134 (29%), Positives = 47/134 (34%), Gaps = 10/134 (7%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGVND----------GVSGDGSADGQRALHRLDALNLLVLVLRG 289
           GA G    A   + AG+GV+           G  GDG A G     RL  +        G
Sbjct: 346 GAGGHGAAAGNGLAAGNGVSSSGGGGAGGTGGAGGDGGAGGAGGNARLWGVG-------G 398

Query: 288 EGGHGRDGSAGQATAQNVDEQVGVLNSLGGHAARRHARSGAQADAGAGASSARGQGGAGL 109
            GG G DG AG A  +            GG        SG   +A  GA    G+GG G 
Sbjct: 399 AGGAGGDGGAGGAGGK------------GG--------SGLSGNANGGAGGDSGRGGTGG 438

Query: 108 RGQHPSCLCGSVGT 67
            G         VGT
Sbjct: 439 AGGEGGAAGLLVGT 452

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 40/134 (29%), Positives = 49/134 (35%), Gaps = 11/134 (8%)
 Frame = -2

Query: 438 GASGLQQQAEQHVQAGDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSA 259
           G++GL          G+G +  V+  GSA G         L        G GG+G  G A
Sbjct: 217 GSAGLWGTGGAGGDGGNGRSGPVNVAGSAGGNGGAGGAAGL----FGDAGAGGNGGKGGA 272

Query: 258 GQATAQ----NVDEQVGVLNSLGGHA-------ARRHARSGAQADAGAGASSARGQGGAG 112
           G A         D   G     GGHA       A  +  SG    AG   + A G GGAG
Sbjct: 273 GGAAFSINFTAGDGGAGGAGGSGGHALLWGAGGAGGNGGSGGTGGAGGSTAGAGGNGGAG 332

Query: 111 LRGQHPSCLCGSVG 70
             G     L G+ G
Sbjct: 333 GGGGTGGLLFGNGG 346

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 33/95 (34%), Positives = 39/95 (40%), Gaps = 1/95 (1%)
 Frame = -2

Query: 393 GDGVNDGVSG-DGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVGV 217
           G  V  GV+G +G A G   L              G GG G DG  G++   NV    G 
Sbjct: 201 GTSVIPGVAGGNGGAGGSAGLW-------------GTGGAGGDGGNGRSGPVNVAGSAGG 247

Query: 216 LNSLGGHAARRHARSGAQADAGAGASSARGQGGAG 112
               GG A       G   DAGAG +   G+GGAG
Sbjct: 248 NGGAGGAA-------GLFGDAGAGGN--GGKGGAG 273

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 33/115 (28%), Positives = 40/115 (34%), Gaps = 2/115 (1%)
 Frame = -2

Query: 393 GDGVNDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQATAQNVDEQVGVL 214
           GDG N G   DG   G               +L G GG+G     G +T   V       
Sbjct: 123 GDGANGGPGQDGGPGG---------------LLYGNGGNG-----GTSTTAGV------- 155

Query: 213 NSLGGHAARRHARSGAQADAGAGASSARGQGGAG--LRGQHPSCLCGSVGTVQGV 55
              GG+           A  G GA +A G GGAG  L G   +   G    + GV
Sbjct: 156 --AGGNGGAAGLIGNGGAGGGGGAGAAGGNGGAGGWLYGNGGAGGAGGTSVIPGV 208

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 34/124 (27%), Positives = 41/124 (32%), Gaps = 19/124 (15%)
 Frame = -2

Query: 381  NDGVSGDGSADGQRALHRLDALNLLVLVLRGEGGHGRDGSAGQ----------ATAQNVD 232
            N G  G G   G  A   L   +  +  L G GG G DG  G           A  Q   
Sbjct: 725  NGGAGGGGGKGGNGAGGGLGGGSFGLPGLNGSGGDGGDGGNGAPGGVLYGNGGAGGQGSS 784

Query: 231  EQVGVLNSLGGHAARRHARSGAQ--------ADAGAGASSAR-GQGGAGLRGQHPSCLCG 79
              +G   + GG   +      AQ         + GAG +    G GG G  G     L G
Sbjct: 785  GGIGGPGATGGAGGKGGDGGDAQLIGDGGNGGNGGAGGTGGTPGPGGPGGSGGLGGLLFG 844

Query: 78   SVGT 67
              GT
Sbjct: 845  QTGT 848



EST assemble image


clone accession position
1 CM043a06_r AV389507 1 255
2 MX065f01_r BP088637 2 369
3 MX049g01_r BP088025 2 331
4 MXL010d11_r BP093580 30 323
5 CM098b05_r AV392939 71 440




Chlamydomonas reinhardtii
Kazusa DNA Research Institute