KCC001376A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001376A_C01 KCC001376A_c01
TAATATTCACCTGGTCTTGCGAATCAAACGCAACTAACGAAACAAAACTGTCAAAACTGT
CCAGCTTCTGCCCTTTTGAAAAGCATATCATTGAATTAGTTGGTAGAATAGGCCAACGAG
CGTGAAATGCGCCTGAGATACGGCGTGTGCAGGAATGACGTGGATGGGGCGCAAGGCGAG
GCCTAGGCGACCACTCTCGTGGCCGAGTCGTGGGCTTGCATGGGTAGGGCTTCCAGAAGG
TCTTGTGGTAACTCACTCACTTGTGTGGTAACTCTGTGTCATATACTCTGTGTCATATAC
TCTGTGTCATATACTTTAACACATTCAGTATATTGGCAAGATGGCTGGTGAACTGCTCGC
AAAAGGCGACCGCGCATTTATCGATGAAAGTTATGAGGACGCGGTGCAGGCGTATACCGA
GGCCCTGGCAGCAGATCCTAGCGATGCGCGTATCTATGAGGCGCGCGCGAATGCTTATCT
CAAGCTGGAGAAGCACTCTGAAGCGAACGCAGACGCCACGAAAGCTCTGGAGCTGTCGCC
GGACCGGCCAAAGGCCTACCTGCGCAAGGGGATAGCGCTGTTCAACTTGGAGGAGTATGA
AGCGGCTAAAGAGGCGTTCGAAGCGGGCTGTGCGCTGGCGCCCGACAACACCTTTAAGAC
GTGGATTCCCAAGTGCGATGCCGAGCTGGAGGATGAGGCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001376A_C01 KCC001376A_c01
         (701 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO85509.1| SGT1 [Nicotiana benthamiana]                           107  2e-22
ref|NP_194088.1| phosphatase - related [Arabidopsis thaliana] gi...   104  1e-21
gb|AAL33611.1|AF439975_1 SGT1a [Arabidopsis thaliana]                 104  1e-21
gb|AAL33610.1|AF439974_1 SGT1 [Hordeum vulgare]                       104  1e-21
gb|AAF18438.1|AF192467_1 Sgt1 [Oryza sativa]                          103  3e-21

>gb|AAO85509.1| SGT1 [Nicotiana benthamiana]
          Length = 370

 Score =  107 bits (267), Expect = 2e-22
 Identities = 56/121 (46%), Positives = 76/121 (62%), Gaps = 1/121 (0%)
 Frame = +2

Query: 341 MAGELLAKGDRAFIDESYEDAVQAYTEALAADPSDARIYEARANAYLKLEKHSEANADAT 520
           MA +L  +   AFID+ +E AV  YT+A+A  P +A ++  RA A +KL   +EA  DA 
Sbjct: 1   MASDLETRAKEAFIDDHFELAVDLYTQAIAMTPKNAELFADRAQANIKLNYFTEAVVDAN 60

Query: 521 KALELSPDRPKAYLRKGIALFNLEEYEAAKEAFEAGCALAP-DNTFKTWIPKCDAELEDE 697
           KA+EL P   KAYLRKG+A   LEEY+ AK A E G +LAP ++ F   I +CD  + +E
Sbjct: 61  KAIELDPSMSKAYLRKGLACMKLEEYQTAKAALETGASLAPAESRFTKLIKECDERIAEE 120

Query: 698 A 700
           A
Sbjct: 121 A 121

>ref|NP_194088.1| phosphatase - related [Arabidopsis thaliana]
           gi|30686242|ref|NP_849429.1| phosphatase - related
           [Arabidopsis thaliana] gi|7486748|pir||T05589
           hypothetical protein F9D16.40 - Arabidopsis thaliana
           gi|4454026|emb|CAA23023.1| phosphatase like protein
           [Arabidopsis thaliana] gi|7269205|emb|CAB79312.1|
           phosphatase like protein [Arabidopsis thaliana]
           gi|17381044|gb|AAL36334.1| putative phosphatase
           [Arabidopsis thaliana] gi|20465861|gb|AAM20035.1|
           putative phosphatase [Arabidopsis thaliana]
          Length = 350

 Score =  104 bits (260), Expect = 1e-21
 Identities = 55/120 (45%), Positives = 75/120 (61%), Gaps = 1/120 (0%)
 Frame = +2

Query: 341 MAGELLAKGDRAFIDESYEDAVQAYTEALAADPSDARIYEARANAYLKLEKHSEANADAT 520
           MA EL  K   AF+D+ ++ AV  Y++A+  DP+ A  +  RA AY+KLE  +EA ADA 
Sbjct: 1   MAKELADKAKEAFVDDDFDVAVDLYSKAIDLDPNCAEFFADRAQAYIKLESFTEAVADAN 60

Query: 521 KALELSPDRPKAYLRKGIALFNLEEYEAAKEAFEAGCALAP-DNTFKTWIPKCDAELEDE 697
           KA+EL P   KAYLRKG A   LEEY  AK A E G ++ P ++ FK  I +C+  + +E
Sbjct: 61  KAIELDPSLTKAYLRKGTACMKLEEYRTAKTALEKGASITPSESKFKKLIDECNFLITEE 120

>gb|AAL33611.1|AF439975_1 SGT1a [Arabidopsis thaliana]
          Length = 350

 Score =  104 bits (260), Expect = 1e-21
 Identities = 55/120 (45%), Positives = 75/120 (61%), Gaps = 1/120 (0%)
 Frame = +2

Query: 341 MAGELLAKGDRAFIDESYEDAVQAYTEALAADPSDARIYEARANAYLKLEKHSEANADAT 520
           MA EL  K   AF+D+ ++ AV  Y++A+  DP+ A  +  RA AY+KLE  +EA ADA 
Sbjct: 1   MAKELADKAKEAFVDDDFDVAVDLYSKAIDLDPNCAEFFADRAQAYIKLESFTEAVADAN 60

Query: 521 KALELSPDRPKAYLRKGIALFNLEEYEAAKEAFEAGCALAP-DNTFKTWIPKCDAELEDE 697
           KA+EL P   KAYLRKG A   LEEY  AK A E G ++ P ++ FK  I +C+  + +E
Sbjct: 61  KAIELDPSLTKAYLRKGTACMKLEEYRTAKTALEKGASITPSESKFKKLIDECNFLITEE 120

>gb|AAL33610.1|AF439974_1 SGT1 [Hordeum vulgare]
          Length = 373

 Score =  104 bits (259), Expect = 1e-21
 Identities = 54/120 (45%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
 Frame = +2

Query: 344 AGELLAKGDRAFIDESYEDAVQAYTEALAADPSDARIYEARANAYLKLEKHSEANADATK 523
           A +L +K   AF+D+ +E A + YT+A+ A P+ A +Y  RA A++KL  ++EA ADA K
Sbjct: 6   ASDLESKAKEAFVDDDFELAAELYTQAIEAGPATAELYADRAQAHIKLGSYTEAVADANK 65

Query: 524 ALELSPDRPKAYLRKGIALFNLEEYEAAKEAFEAGCALAP-DNTFKTWIPKCDAELEDEA 700
           A+EL P   KAYLRKG A   LEEY+ AK A E G + A  D+ F   + +CD  + +EA
Sbjct: 66  AIELDPSMHKAYLRKGSACIKLEEYQTAKAALEVGSSYASGDSRFTRLMKECDDRIAEEA 125

>gb|AAF18438.1|AF192467_1 Sgt1 [Oryza sativa]
          Length = 367

 Score =  103 bits (256), Expect = 3e-21
 Identities = 53/119 (44%), Positives = 75/119 (62%), Gaps = 1/119 (0%)
 Frame = +2

Query: 344 AGELLAKGDRAFIDESYEDAVQAYTEALAADPSDARIYEARANAYLKLEKHSEANADATK 523
           A +L +K   AF+D+ +E A + YT+A+ A P+ A +Y  RA A++KL  ++EA ADA K
Sbjct: 6   ASDLESKAKAAFVDDDFELAAELYTQAIEASPATAELYADRAQAHIKLGNYTEAVADANK 65

Query: 524 ALELSPDRPKAYLRKGIALFNLEEYEAAKEAFEAGCALAP-DNTFKTWIPKCDAELEDE 697
           A+EL P   KAYLRKG A   LEEY+ AK A E G + A  D+ F   + +CD  + +E
Sbjct: 66  AIELDPSMHKAYLRKGAACIRLEEYQTAKAALELGYSFASGDSRFTRLMKECDERIAEE 124



EST assemble image


clone accession position
1 LC037d05_r AV621534 1 550
2 HC060e08_r AV636517 401 794
3 CM042e12_r AV389296 401 781




Chlamydomonas reinhardtii
Kazusa DNA Research Institute