KCC001375A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001375A_C01 KCC001375A_c01
gtgctgcattgcccgcctcacctcgcatgcgtttggtttgctgctcgccgggtctccgcc
gccggccgctttagcgctggCTCGCAGCCGGCCGCTTTAGTTTAGCACTGGAGGTAGGTC
CGTGTGTGGCCGCATTTTTTGTGCGGAGCATGGCATGGCATCTCTGGCTGGCTGTGGTGG
GCAGGCGGCATACCTCGCTGCTTCGACAACCACGGGAAGTCCAAGAGCCCCCACAAGTTG
GGCACATAAGCTTTAGGCGTGAGGTGTGACGTACGTGCTTGTTAACACAATTTACAATCC
GTATCTGTCGGGCGTGTATGCCTGAGTGGTTAGACATGTGCGTGGGACACGTACCCGCGT
GGAGGTTTGTGGTACCGCTTATGTACAGATCATTGTGCGAGTGTGGGGGTGGGGCAACCA
GGATGACGGGACGCGCCCGAGAATGGATGTGTTGCGTCTGTGTCTGTGGTGTGTCTGTCG
TGAACGAGGGGATAACGCCCCGCAGAGGAAATCATTGCATGCGGCACTGACTTTGCAAGC
CCTGTCGGACCGCCAGGTTGGCAAGCCGGCGGGCTCAAGGGCAGTTGCCGTGTATGCGGT
GCAGCGCGTTGACTGCGGAGTGGGCCGTAGGGTGTGACCCGAACCTCCCTGGTTGAGCTT
GTGGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001375A_C01 KCC001375A_c01
         (666 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_301192.1| hypothetical protein XP_301192 [Homo sapiens]         39  0.092
dbj|BAC87289.1| unnamed protein product [Homo sapiens]                 37  0.20
ref|XP_297652.1| hypothetical protein XP_297652 [Homo sapiens]         37  0.27
dbj|BAC03288.1| P0496H05.16 [Oryza sativa (japonica cultivar-gro...    37  0.35
ref|XP_318221.1| ENSANGP00000017020 [Anopheles gambiae] gi|30175...    36  0.59

>ref|XP_301192.1| hypothetical protein XP_301192 [Homo sapiens]
          Length = 316

 Score = 38.5 bits (88), Expect = 0.092
 Identities = 31/108 (28%), Positives = 50/108 (45%), Gaps = 14/108 (12%)
 Frame = -2

Query: 617 RSQRAAPHTRQLPLSPPACQPGGPTG-------LAKSVPHAMISSAG------RYPLVHD 477
           ++   +P   QLPL P A + G PTG       LA   P+A +++A       R+P++  
Sbjct: 127 KNHPGSPPGVQLPLGPQASRAGSPTGAFLGSLPLAPESPNAQVTTAASPAKATRFPILSP 186

Query: 476 RHTTDTDATHPFSG-ASRHPGCPTPTLAQ*SVHKRYHKPPRGYVSHAH 336
            HT  + +  P  G  +R    P P ++      R  +  RG++ HAH
Sbjct: 187 AHTLRSQSFPPGLGQRTRAWEGPEPVVSS----LRPPRALRGHLRHAH 230

>dbj|BAC87289.1| unnamed protein product [Homo sapiens]
          Length = 377

 Score = 37.4 bits (85), Expect = 0.20
 Identities = 45/199 (22%), Positives = 62/199 (30%), Gaps = 6/199 (3%)
 Frame = -2

Query: 653 TREVRVTPYGPLRSQRAAPHTRQLPLSPPACQPGGPTGLAKS----VPHAMISS--AGRY 492
           TR++  TP          PHT  L  +P  C        + +     PH +  +     +
Sbjct: 55  TRQIAPTPTHLHIHTHICPHTLSLSHTPTQCTSSHSHTCSHTHSLTCPHTLAPTRHTHSH 114

Query: 491 PLVHDRHTTDTDATHPFSGASRHPGCPTPTLAQ*SVHKRYHKPPRGYVSHAHV*PLRHTR 312
              H    T T + + F+  S  PG           H   H  P    +H H   LR T 
Sbjct: 115 ACTHPHVQTHTASAYTFTTHSHTPGHTHSCSHLIHTHSHAHSHPPNAPTHTHAHTLRPTY 174

Query: 311 PTDTDCKLC*QARTSHLTPKAYVPNLWGLLDFPWLSKQRGMPPAHHSQPEMPCHAPHKKC 132
              T      ++   HL            L  P       + P  H+    P H PH + 
Sbjct: 175 CPHT------RSHPMHLLT----------LIRPLTPAHTHLTPGSHTHVHTPAHTPHTR- 217

Query: 131 GHTRTYLQC*TKAAGCEPA 75
            H  T L   T A    PA
Sbjct: 218 SHNHTCLYLLTHACTNTPA 236

>ref|XP_297652.1| hypothetical protein XP_297652 [Homo sapiens]
          Length = 660

 Score = 37.0 bits (84), Expect = 0.27
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +3

Query: 315 CMPEWLDMCVGHVPAWRFVVPLMYRSLCE-CGGGATRMTGRAREWMC-CVCV--CGVSVV 482
           C+  WL  CV   P  R  V L  R+    CG  A R+ GR   W+C CV V  CG   V
Sbjct: 227 CVAVWLCGCVAVWPCGRAAVRLCGRAAVRLCGCAAVRLCGRVAVWLCGCVVVWLCGCVAV 286

>dbj|BAC03288.1| P0496H05.16 [Oryza sativa (japonica cultivar-group)]
          Length = 237

 Score = 36.6 bits (83), Expect = 0.35
 Identities = 41/132 (31%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
 Frame = -2

Query: 650 REVRVTPYGPLRSQRAAPHTRQLP--------LSPPACQPGGPTGLAKSVPHAMISS-AG 498
           R +   P  P  S  AA  +   P        L PP C    P  L  S PH ++SS   
Sbjct: 50  RSIHGKPRPPASSAIAAALSNAPPPRIGSIIHLRPPPCVASSPPHLHTSPPHRLLSSPVP 109

Query: 497 RYPLVHDRHTTDTDATHPFSG------ASRHPGCPTPTLAQ*SVHKRYHKPPRGYVSHAH 336
           R P      T D  AT   S        SR P CP P + +  V  R H+  RG  S   
Sbjct: 110 RAPRPAPPSTADA-ATRAVSSLPSPRPESRVPRCPLPPMREQEVTPRQHR--RGAASSP- 165

Query: 335 V*PLRHTRPTDT 300
             P R   P  T
Sbjct: 166 --PSRRPAPPST 175

>ref|XP_318221.1| ENSANGP00000017020 [Anopheles gambiae] gi|30175006|gb|EAA13376.2|
           ENSANGP00000017020 [Anopheles gambiae str. PEST]
          Length = 596

 Score = 35.8 bits (81), Expect = 0.59
 Identities = 25/81 (30%), Positives = 39/81 (47%)
 Frame = -3

Query: 388 LYISGTTNLHAGTCPTHMSNHSGIHARQIRIVNCVNKHVRHTSRLKLMCPTCGGSWTSRG 209
           LY S   N+    C T    H+  H   ++ +  V++ +   +RL+L C TC     S+ 
Sbjct: 4   LYTSRQINIKCLVCTT--PGHAAKHCETLKRMT-VDERLESVTRLQL-CSTCLNRHGSKP 59

Query: 208 CRSSEVCRLPTTASQRCHAML 146
           CRS   CR+P    +R H +L
Sbjct: 60  CRSRFTCRVP-GCGERHHTLL 79



EST assemble image


clone accession position
1 HC042g01_r AV635163 1 489
2 HC045b11_r AV635344 141 603
3 CM042d11_r AV389303 335 666




Chlamydomonas reinhardtii
Kazusa DNA Research Institute