KCC001374A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001374A_C01 KCC001374A_c01
ctggcctacctacaagtccatcgacgtggcactgccGCGCGAGATGGTGGAGGGCGTGGA
GGTGTACCGCTCCTACTACGACTCCGACTCCAAGCACCGCAAGCTGACGTGGATCTACAC
GCTGGGCACAGCGGTGCTGCGGGGCAACTTCGACTCCAAGCCCATCGAGATGCAGATGAA
CACGCTGCAGGCGGCGCTGTGCATGCTGCTCAACGACGTGGACGAGCTGAGCTACGGCGA
GATCCAGGAGCGGCTGCGCCTGCCCGATGACGACCTGCAGCGCCTGCTGCACTCGCTGGT
CTGCGCCAAATACAAGATCATTAAGAAGGATCCGGACGGCAAGTCCATTGGCAAGTCAGA
CAAGTTCGCGTTCAACAACCGCTTCACTGACAAAATGCGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001374A_C01 KCC001374A_c01
         (400 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK53842.1|AC011806_19 Putative cullin [Oryza sativa] gi|1552...   171  2e-42
dbj|BAB64732.1| cullin-like protein [Oryza sativa (japonica cult...   162  8e-40
gb|AAK53839.1|AC011806_16 Putative cullin [Oryza sativa]              162  8e-40
ref|NP_567243.1| cullin 1 protein -related [Arabidopsis thaliana...   160  4e-39
pir||T01092 cullin-like protein T10P11.14.1 - Arabidopsis thalia...   160  4e-39

>gb|AAK53842.1|AC011806_19 Putative cullin [Oryza sativa] gi|15528667|dbj|BAB64734.1|
           cullin-like protein [Oryza sativa (japonica
           cultivar-group)] gi|15528698|dbj|BAB64764.1| cullin-like
           protein [Oryza sativa (japonica cultivar-group)]
          Length = 746

 Score =  171 bits (433), Expect = 2e-42
 Identities = 77/133 (57%), Positives = 102/133 (75%)
 Frame = +2

Query: 2   WPTYKSIDVALPREMVEGVEVYRSYYDSDSKHRKLTWIYTLGTAVLRGNFDSKPIEMQMN 181
           WPTYK+ D+ LP EMV+ VEV++ YY SD +HRKLTWI++LG  V+ GNFD+KP+E  +N
Sbjct: 522 WPTYKNSDINLPLEMVKCVEVFKEYYRSDKQHRKLTWIFSLGNCVVIGNFDAKPVEFVLN 581

Query: 182 TLQAALCMLLNDVDELSYGEIQERLRLPDDDLQRLLHSLVCAKYKIIKKDPDGKSIGKSD 361
           T QAAL +L N+ D+LSY +I  +L+L DDD  RLLHSL CAKYKI+ K+P  + I   D
Sbjct: 582 TYQAALLLLFNEADKLSYSDIVSQLKLSDDDAVRLLHSLSCAKYKILNKEPSNRVISPED 641

Query: 362 KFAFNNRFTDKMR 400
           +F FN++FTD+MR
Sbjct: 642 EFEFNSKFTDRMR 654

>dbj|BAB64732.1| cullin-like protein [Oryza sativa (japonica cultivar-group)]
           gi|15528696|dbj|BAB64762.1| cullin-like protein [Oryza
           sativa (japonica cultivar-group)]
           gi|33243052|gb|AAQ01196.1| CUL1 [Oryza sativa (japonica
           cultivar-group)]
          Length = 732

 Score =  162 bits (411), Expect = 8e-40
 Identities = 75/133 (56%), Positives = 100/133 (74%)
 Frame = +2

Query: 2   WPTYKSIDVALPREMVEGVEVYRSYYDSDSKHRKLTWIYTLGTAVLRGNFDSKPIEMQMN 181
           WP+YKS D+ LP EMV+ VEV++ +Y + +KHRKLTWIY+LGT  +   F++K IE+ + 
Sbjct: 508 WPSYKSFDINLPAEMVKCVEVFKEFYQTRTKHRKLTWIYSLGTCNINAKFEAKTIELIVT 567

Query: 182 TLQAALCMLLNDVDELSYGEIQERLRLPDDDLQRLLHSLVCAKYKIIKKDPDGKSIGKSD 361
           T QAAL +L N VD LSY EI  +L L DDD+ RLLHSL CAKYKI+ K+P+ +SI  +D
Sbjct: 568 TYQAALLLLFNGVDRLSYSEIVTQLNLSDDDVVRLLHSLSCAKYKILSKEPNNRSISPND 627

Query: 362 KFAFNNRFTDKMR 400
            F FN++FTDK+R
Sbjct: 628 VFEFNSKFTDKLR 640

>gb|AAK53839.1|AC011806_16 Putative cullin [Oryza sativa]
          Length = 750

 Score =  162 bits (411), Expect = 8e-40
 Identities = 75/133 (56%), Positives = 100/133 (74%)
 Frame = +2

Query: 2   WPTYKSIDVALPREMVEGVEVYRSYYDSDSKHRKLTWIYTLGTAVLRGNFDSKPIEMQMN 181
           WP+YKS D+ LP EMV+ VEV++ +Y + +KHRKLTWIY+LGT  +   F++K IE+ + 
Sbjct: 526 WPSYKSFDINLPAEMVKCVEVFKEFYQTRTKHRKLTWIYSLGTCNINAKFEAKTIELIVT 585

Query: 182 TLQAALCMLLNDVDELSYGEIQERLRLPDDDLQRLLHSLVCAKYKIIKKDPDGKSIGKSD 361
           T QAAL +L N VD LSY EI  +L L DDD+ RLLHSL CAKYKI+ K+P+ +SI  +D
Sbjct: 586 TYQAALLLLFNGVDRLSYSEIVTQLNLSDDDVVRLLHSLSCAKYKILSKEPNNRSISPND 645

Query: 362 KFAFNNRFTDKMR 400
            F FN++FTDK+R
Sbjct: 646 VFEFNSKFTDKLR 658

>ref|NP_567243.1| cullin 1 protein -related [Arabidopsis thaliana]
           gi|15028161|gb|AAK76704.1| putative cullin 1 protein
           [Arabidopsis thaliana] gi|22136936|gb|AAM91812.1|
           putative cullin 1 protein [Arabidopsis thaliana]
           gi|30524960|emb|CAC85264.1| cullin 1 [Arabidopsis
           thaliana]
          Length = 738

 Score =  160 bits (405), Expect = 4e-39
 Identities = 72/133 (54%), Positives = 102/133 (76%)
 Frame = +2

Query: 2   WPTYKSIDVALPREMVEGVEVYRSYYDSDSKHRKLTWIYTLGTAVLRGNFDSKPIEMQMN 181
           WP+YKS D+ LP EM++ VEV++ +Y++ +KHRKLTWIY+LGT  + G FD K IE+ ++
Sbjct: 514 WPSYKSFDINLPSEMIKCVEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVS 573

Query: 182 TLQAALCMLLNDVDELSYGEIQERLRLPDDDLQRLLHSLVCAKYKIIKKDPDGKSIGKSD 361
           T QAA+ +L N  D+LSY EI  +L L  +DL RLLHSL CAKYKI+ K+P+ K++ ++D
Sbjct: 574 TYQAAVLLLFNTTDKLSYTEILAQLNLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQND 633

Query: 362 KFAFNNRFTDKMR 400
            F FN++FTD+MR
Sbjct: 634 AFEFNSKFTDRMR 646

>pir||T01092 cullin-like protein T10P11.14.1 - Arabidopsis thaliana
           gi|2281115|gb|AAC78267.1|AAC78267 putative cullin-like 1
           protein [Arabidopsis thaliana]
           gi|7269017|emb|CAB80750.1| putative cullin-like 1
           protein [Arabidopsis thaliana]
          Length = 676

 Score =  160 bits (405), Expect = 4e-39
 Identities = 72/133 (54%), Positives = 102/133 (76%)
 Frame = +2

Query: 2   WPTYKSIDVALPREMVEGVEVYRSYYDSDSKHRKLTWIYTLGTAVLRGNFDSKPIEMQMN 181
           WP+YKS D+ LP EM++ VEV++ +Y++ +KHRKLTWIY+LGT  + G FD K IE+ ++
Sbjct: 452 WPSYKSFDINLPSEMIKCVEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVS 511

Query: 182 TLQAALCMLLNDVDELSYGEIQERLRLPDDDLQRLLHSLVCAKYKIIKKDPDGKSIGKSD 361
           T QAA+ +L N  D+LSY EI  +L L  +DL RLLHSL CAKYKI+ K+P+ K++ ++D
Sbjct: 512 TYQAAVLLLFNTTDKLSYTEILAQLNLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQND 571

Query: 362 KFAFNNRFTDKMR 400
            F FN++FTD+MR
Sbjct: 572 AFEFNSKFTDRMR 584



EST assemble image


clone accession position
1 CM080f07_r AV392012 1 514
2 CM042d04_r AV389232 30 236




Chlamydomonas reinhardtii
Kazusa DNA Research Institute