KCC001367A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001367A_C01 KCC001367A_c01
gcacgagCCTACTTGCACAATTAAATATCTAACTCAACTAGTTCCACGCTCTCCTGCCAG
CTACCGGAACAATTGCGTTCTGCTTTTCAGTTGCTGTAGTCTTTGGCTGCACAACCTTAC
GCGATGGCGCTACTTGCCAACAGCCGCTCGCTACGTGGAGCGAACCCCAGCGCTGTCCGT
GCCACGGCGGCACGGGTTGCACGACTGGCCGTGGTTCCGCGGAGGGGTGTGGCCACCGCC
GCCCAGAAGCAGCAGTTCGAGTCGTTTGATGATATGCTGGCGCGCTCGGAGCTCCCACTG
CTGGTGGACTTCTACGCAACCTGGTGTGGGCCCTGCCAAATGATGTCGCCCATCCTGACG
GCAGTGCAGACCAAGATGAAGGGCAAGTTGCAGGTTGTCAAAATCGACACGGACAAGTAC
CCCGGCATTGCCAGCCAGCACCGCATCCAGGCCCTGCCCACCATTGCGCTTTTCATGAAG
GGCAAGATGGTCTTCCGCTTTGAGGGCGTCCTCAACGAGGGCCAAATCATTGATAAGGTC
AACTACTACCTCAGTGGCGCCGCGATGGGGCAGCAGAAGTAATAGGCTGCTGTGCTGCGT
CTCCACGTCATAGCGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001367A_C01 KCC001367A_c01
         (617 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO20257.1| thioredoxin y [Chlamydomonas reinhardtii]              298  3e-80
ref|ZP_00071156.1| COG0526: Thiol-disulfide isomerase and thiore...   128  8e-29
ref|NP_177802.1| thioredoxin family [Arabidopsis thaliana] gi|25...   125  5e-28
ref|NP_442168.1| thioredoxin M [Synechocystis sp. PCC 6803] gi|1...   125  6e-28
ref|NP_175021.2| thioredoxin family [Arabidopsis thaliana] gi|22...   124  1e-27

>gb|AAO20257.1| thioredoxin y [Chlamydomonas reinhardtii]
          Length = 152

 Score =  298 bits (764), Expect = 3e-80
 Identities = 152/152 (100%), Positives = 152/152 (100%)
 Frame = +1

Query: 124 MALLANSRSLRGANPSAVRATAARVARLAVVPRRGVATAAQKQQFESFDDMLARSELPLL 303
           MALLANSRSLRGANPSAVRATAARVARLAVVPRRGVATAAQKQQFESFDDMLARSELPLL
Sbjct: 1   MALLANSRSLRGANPSAVRATAARVARLAVVPRRGVATAAQKQQFESFDDMLARSELPLL 60

Query: 304 VDFYATWCGPCQMMSPILTAVQTKMKGKLQVVKIDTDKYPGIASQHRIQALPTIALFMKG 483
           VDFYATWCGPCQMMSPILTAVQTKMKGKLQVVKIDTDKYPGIASQHRIQALPTIALFMKG
Sbjct: 61  VDFYATWCGPCQMMSPILTAVQTKMKGKLQVVKIDTDKYPGIASQHRIQALPTIALFMKG 120

Query: 484 KMVFRFEGVLNEGQIIDKVNYYLSGAAMGQQK 579
           KMVFRFEGVLNEGQIIDKVNYYLSGAAMGQQK
Sbjct: 121 KMVFRFEGVLNEGQIIDKVNYYLSGAAMGQQK 152

>ref|ZP_00071156.1| COG0526: Thiol-disulfide isomerase and thioredoxins [Trichodesmium
           erythraeum IMS101]
          Length = 107

 Score =  128 bits (321), Expect = 8e-29
 Identities = 56/101 (55%), Positives = 82/101 (80%)
 Frame = +1

Query: 241 AQKQQFESFDDMLARSELPLLVDFYATWCGPCQMMSPILTAVQTKMKGKLQVVKIDTDKY 420
           A K++F +FD++LA S+LP+LVDFYATWCGPC+MM+PIL  V  ++K KL++VKIDTDKY
Sbjct: 2   AIKKKFNNFDELLAGSDLPVLVDFYATWCGPCKMMTPILEQVNQQIKDKLRIVKIDTDKY 61

Query: 421 PGIASQHRIQALPTIALFMKGKMVFRFEGVLNEGQIIDKVN 543
           P +AS++ I++LPT+ LF  G+ V R EGV+   Q+++++N
Sbjct: 62  PQLASRYHIESLPTLVLFKNGQPVDRIEGVIQSPQLVERLN 102

>ref|NP_177802.1| thioredoxin family [Arabidopsis thaliana] gi|25406467|pir||B96796
           thioredoxin-like protein, 49720-48645 [imported] -
           Arabidopsis thaliana gi|6143893|gb|AAF04439.1|AC010718_8
           thioredoxin-like protein; 49720-48645 [Arabidopsis
           thaliana]
          Length = 151

 Score =  125 bits (314), Expect = 5e-28
 Identities = 65/134 (48%), Positives = 89/134 (65%)
 Frame = +1

Query: 139 NSRSLRGANPSAVRATAARVARLAVVPRRGVATAAQKQQFESFDDMLARSELPLLVDFYA 318
           NS+   G +  A R+ +A   +  V  RR     A+KQ F+SF+D+L  S+ P+LVD+YA
Sbjct: 15  NSKESSGVSAFASRSISAVKFQFPV--RR---IEAKKQTFDSFEDLLVNSDKPVLVDYYA 69

Query: 319 TWCGPCQMMSPILTAVQTKMKGKLQVVKIDTDKYPGIASQHRIQALPTIALFMKGKMVFR 498
           TWCGPCQ M PIL  V   +K K+QVVKIDT+KYP IA++++I+ALPT  LF  G+   R
Sbjct: 70  TWCGPCQFMVPILNEVSETLKDKIQVVKIDTEKYPSIANKYKIEALPTFILFKDGEPCDR 129

Query: 499 FEGVLNEGQIIDKV 540
           FEG L   Q+I ++
Sbjct: 130 FEGALTAKQLIQRI 143

>ref|NP_442168.1| thioredoxin M [Synechocystis sp. PCC 6803]
           gi|1729938|sp|P52232|THI1_SYNY3 Thioredoxin-like protein
           SLR0233 gi|7430831|pir||S76386 thioredoxin M-1 -
           Synechocystis sp. (strain PCC 6803)
           gi|1001610|dbj|BAA10238.1| thioredoxin M [Synechocystis
           sp. PCC 6803]
          Length = 105

 Score =  125 bits (313), Expect = 6e-28
 Identities = 58/104 (55%), Positives = 80/104 (76%)
 Frame = +1

Query: 241 AQKQQFESFDDMLARSELPLLVDFYATWCGPCQMMSPILTAVQTKMKGKLQVVKIDTDKY 420
           A K+QF +F +MLA S  P+LVDFYATWCGPCQMM+PIL  V + ++ ++QVVKIDTDKY
Sbjct: 2   AVKKQFANFAEMLAGSPKPVLVDFYATWCGPCQMMAPILEQVGSHLRQQIQVVKIDTDKY 61

Query: 421 PGIASQHRIQALPTIALFMKGKMVFRFEGVLNEGQIIDKVNYYL 552
           P IA+Q++IQ+LPT+ LF +G+ V R EGV    Q+I ++  ++
Sbjct: 62  PAIATQYQIQSLPTLVLFKQGQPVHRMEGVQQAAQLIQQLQVFV 105

>ref|NP_175021.2| thioredoxin family [Arabidopsis thaliana]
           gi|22135797|gb|AAM91085.1| At1g43560/T10P12_4
           [Arabidopsis thaliana]
          Length = 167

 Score =  124 bits (311), Expect = 1e-27
 Identities = 56/101 (55%), Positives = 76/101 (74%)
 Frame = +1

Query: 238 AAQKQQFESFDDMLARSELPLLVDFYATWCGPCQMMSPILTAVQTKMKGKLQVVKIDTDK 417
           AA+KQ F SFDD+L  S+ P+LVDFYATWCGPCQ+M PIL  V   +K  + VVKIDT+K
Sbjct: 59  AAKKQTFNSFDDLLQNSDKPVLVDFYATWCGPCQLMVPILNEVSETLKDIIAVVKIDTEK 118

Query: 418 YPGIASQHRIQALPTIALFMKGKMVFRFEGVLNEGQIIDKV 540
           YP +A++++I+ALPT  LF  GK+  RFEG L   Q+++++
Sbjct: 119 YPSLANKYQIEALPTFILFKDGKLWDRFEGALPANQLVERI 159



EST assemble image


clone accession position
1 CM041h02_r AV389443 1 557
2 MX238c11_r BP091410 8 483
3 MX019d09_r BP086879 11 378
4 LCL090f04_r AV631233 25 425
5 LC089g08_r AV625242 92 618




Chlamydomonas reinhardtii
Kazusa DNA Research Institute