KCC001366A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001366A_C01 KCC001366A_c01
CATACGCTTGCGGTTCGCCTTTGCATCTACTGAACCAGCGACGATTGCAATCGATTGCGG
TACTCCTGTCGCCGCTCGCAGCGTCTGTCGCGGTCGCCAATAACCAATCGCCTAACACCT
GTGCTAGCTTCAGCAGCATGGCGAACCCCGAGTTTTACGGCCTGTCGACGACCACGCTTT
CGGGACAGCCCTTTCCTTTCAAGGACCTTGAGGGCAAGGCAGTCCTAATCGTGAACGTGG
CTAGCAAGTGCGGCTTTACGCCACAATACAAGGGTCTGGAGGAGCTGTACCAACAGTACA
AGGACCGGGGGCTCGTCATCCTTGGCTTCCCCTGCAACCAGTTTGGAGGCCAGGAGCCTG
GGGACGCTAGCGCCATCGGGGAGTTCTGCCAGCGCAATTTCGGCGTTACGTTCCCCATTA
TGGAGAAGTCGGACGTGAACGGCAACGACGCCAACCCCGTGTTCAAGTACCTGAAGAGCC
AAAAGAAGCAGTTCATGATGGAGATGATTAAATGGAACTTTGAGAAGTTCCTGGTGGACA
AGAGCGGCCAGGTGGTGGCGCGCTTCAGCAGCATGGCTACCCCCGCCAGCCTGGCGCCGG
AGATTGAGAAGGTGCTGAACGCGTAAGCGATGCGATTGTTTTGTTTTTGAGCGGCCAGGC
GGCAAGGGCCCTGACAGAGATGTGCAGATGTCAAGGTGCCGCCTTGGGGCTGCAGAAGAG
ATGGAGTTGTCAGCCGTGTTCTGCAGGGCTAGCAAGCAACGGCGTGTGTTGGCAGGATGC
AGCAGGGCGGTGAGGACTTGGAGGGAGACTCGAACTACTGCAAGCACCTGGGACAGCCCT
GTTGAGGCACCCGAGCTATTTGCCTTTGGAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001366A_C01 KCC001366A_c01
         (871 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T09638 probable glutathione peroxidase (EC 1.11.1.9) - Chla...   332  5e-90
dbj|BAA83594.1| glutathione peroxidase [Chlamydomonas sp. W80]        218  1e-55
ref|NP_596146.1| glutathione peroxidase [Schizosaccharomyces pom...   216  3e-55
ref|NP_012303.1| Hydroperoxide resistance conferring gene. Senso...   207  1e-52
ref|NP_009803.1| Glutathione peroxidase paralogue; Gpx2p [Saccha...   202  8e-51

>pir||T09638 probable glutathione peroxidase (EC 1.11.1.9) - Chlamydomonas
           reinhardtii gi|2316117|gb|AAB66330.1| glutathione
           peroxidase homolog [Chlamydomonas reinhardtii]
          Length = 162

 Score =  332 bits (851), Expect = 5e-90
 Identities = 162/162 (100%), Positives = 162/162 (100%)
 Frame = +3

Query: 138 MANPEFYGLSTTTLSGQPFPFKDLEGKAVLIVNVASKCGFTPQYKGLEELYQQYKDRGLV 317
           MANPEFYGLSTTTLSGQPFPFKDLEGKAVLIVNVASKCGFTPQYKGLEELYQQYKDRGLV
Sbjct: 1   MANPEFYGLSTTTLSGQPFPFKDLEGKAVLIVNVASKCGFTPQYKGLEELYQQYKDRGLV 60

Query: 318 ILGFPCNQFGGQEPGDASAIGEFCQRNFGVTFPIMEKSDVNGNDANPVFKYLKSQKKQFM 497
           ILGFPCNQFGGQEPGDASAIGEFCQRNFGVTFPIMEKSDVNGNDANPVFKYLKSQKKQFM
Sbjct: 61  ILGFPCNQFGGQEPGDASAIGEFCQRNFGVTFPIMEKSDVNGNDANPVFKYLKSQKKQFM 120

Query: 498 MEMIKWNFEKFLVDKSGQVVARFSSMATPASLAPEIEKVLNA 623
           MEMIKWNFEKFLVDKSGQVVARFSSMATPASLAPEIEKVLNA
Sbjct: 121 MEMIKWNFEKFLVDKSGQVVARFSSMATPASLAPEIEKVLNA 162

>dbj|BAA83594.1| glutathione peroxidase [Chlamydomonas sp. W80]
          Length = 163

 Score =  218 bits (555), Expect = 1e-55
 Identities = 101/161 (62%), Positives = 130/161 (80%), Gaps = 1/161 (0%)
 Frame = +3

Query: 138 MANPEFYGLSTTTLSGQPFPFKDLEGKAVLIVNVASKCGFTPQYKGLEELYQQYKDRGLV 317
           MA+P FY L+ T ++G+ FPF  L+GK VL+VNVAS+CGFTPQYKGL+ELY +YKD GLV
Sbjct: 1   MASP-FYALAATDIAGKEFPFAQLQGKVVLVVNVASQCGFTPQYKGLQELYDKYKDEGLV 59

Query: 318 ILGFPCNQFGGQEPGDASAIGEFCQRNFGVTFPIMEKSDVNGNDANPVFKYLKSQKKQFM 497
           I+GFPC+QFG QEPG  S I  FCQ+NFGVTFP+M K +VNG++ +PV+++LKS+KKQ  
Sbjct: 60  IIGFPCDQFGHQEPGQESEIASFCQKNFGVTFPMMAKIEVNGDNTHPVYQFLKSEKKQLF 119

Query: 498 MEMIKWNFEKFLVDKSGQVVARFSSMATP-ASLAPEIEKVL 617
           ME IKWNFEKFL++K G+VV RFSS   P  ++AP + K+L
Sbjct: 120 MERIKWNFEKFLINKQGEVVERFSSAGDPMRNIAPAVAKLL 160

>ref|NP_596146.1| glutathione peroxidase [Schizosaccharomyces pombe]
           gi|6225487|sp|O59858|GPX1_SCHPO Glutathione peroxidase
           gi|11255600|pir||T43376 glutathione peroxidase (EC
           1.11.1.9) [similarity] - fission yeast
           (Schizosaccharomyces pombe) gi|2992162|dbj|BAA25326.1|
           glutathione peroxidase [Schizosaccharomyces pombe]
           gi|3192035|emb|CAA19364.1| SPBC32F12.03c
           [Schizosaccharomyces pombe]
          Length = 158

 Score =  216 bits (551), Expect = 3e-55
 Identities = 97/155 (62%), Positives = 123/155 (78%)
 Frame = +3

Query: 153 FYGLSTTTLSGQPFPFKDLEGKAVLIVNVASKCGFTPQYKGLEELYQQYKDRGLVILGFP 332
           FY L+     G PFPF +L+GK VL+VN ASKCGFTPQYKGLE LYQ+YKDRG +ILGFP
Sbjct: 4   FYDLAPKDKDGNPFPFSNLKGKVVLVVNTASKCGFTPQYKGLEALYQKYKDRGFIILGFP 63

Query: 333 CNQFGGQEPGDASAIGEFCQRNFGVTFPIMEKSDVNGNDANPVFKYLKSQKKQFMMEMIK 512
           CNQFG QEPG    I +FCQ+N+GVTFP++ K +VNG++ +PV+++LKSQKKQ  +E IK
Sbjct: 64  CNQFGNQEPGSDEEIAQFCQKNYGVTFPVLAKINVNGDNVDPVYQFLKSQKKQLGLERIK 123

Query: 513 WNFEKFLVDKSGQVVARFSSMATPASLAPEIEKVL 617
           WNFEKFLV++ GQV+ R+SS++ P  L  +IE VL
Sbjct: 124 WNFEKFLVNRQGQVIERYSSISKPEHLENDIESVL 158

>ref|NP_012303.1| Hydroperoxide resistance conferring gene. Sensor and transducer of
           the hydroperoxide signal to Yap1. Hydroperoxide receptor
           and redox-transducer.; Hyr1p [Saccharomyces cerevisiae]
           gi|729640|sp|P40581|GPX3_YEAST Glutathione peroxidase 3
           gi|626388|pir||S48499 glutathione peroxidase (EC
           1.11.1.9) HYR1 [similarity] - yeast (Saccharomyces
           cerevisiae) gi|557843|emb|CAA86197.1| unnamed protein
           product [Saccharomyces cerevisiae]
           gi|727367|gb|AAA64283.1| Hyr1p
          Length = 163

 Score =  207 bits (528), Expect = 1e-52
 Identities = 99/157 (63%), Positives = 120/157 (76%), Gaps = 1/157 (0%)
 Frame = +3

Query: 150 EFYGLSTTTLSGQPFPFKDLEGKAVLIVNVASKCGFTPQYKGLEELYQQYKDRGLVILGF 329
           EFY L+     GQPFPF  L+GK VLIVNVASKCGFTPQYK LE LY++YKD G  I+GF
Sbjct: 3   EFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTPQYKELEALYKRYKDEGFTIIGF 62

Query: 330 PCNQFGGQEPGDASAIGEFCQRNFGVTFPIMEKSDVNGNDANPVFKYLKSQKKQFM-MEM 506
           PCNQFG QEPG    I +FCQ N+GVTFPIM+K DVNG + +PV+K+LKSQK   + +  
Sbjct: 63  PCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRG 122

Query: 507 IKWNFEKFLVDKSGQVVARFSSMATPASLAPEIEKVL 617
           IKWNFEKFLVDK G+V  R+SS+  P+SL+  IE++L
Sbjct: 123 IKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELL 159

>ref|NP_009803.1| Glutathione peroxidase paralogue; Gpx2p [Saccharomyces cerevisiae]
           gi|585222|sp|P38143|GPX2_YEAST Glutathione peroxidase 2
           gi|626804|pir||S46121 probable glutathione peroxidase
           (EC 1.11.1.9) - yeast  (Saccharomyces cerevisiae)
           gi|536655|emb|CAA85207.1| unnamed protein product
           [Saccharomyces cerevisiae]
          Length = 162

 Score =  202 bits (513), Expect = 8e-51
 Identities = 99/157 (63%), Positives = 120/157 (76%), Gaps = 1/157 (0%)
 Frame = +3

Query: 153 FYGLSTTTLSGQPFPFKDLEGKAVLIVNVASKCGFTPQYKGLEELYQQYKDRGLVILGFP 332
           FY L      G+ F F  L+GK VLIVNVASKCGFTPQYK LEELY++Y+D+G VILGFP
Sbjct: 5   FYDLECKDKKGESFKFDQLKGKVVLIVNVASKCGFTPQYKELEELYKKYQDKGFVILGFP 64

Query: 333 CNQFGGQEPGDASAIGEFCQRNFGVTFPIMEKSDVNGNDANPVFKYLKSQKKQFM-MEMI 509
           CNQFG QEPG    I EFCQ N+GVTFPIM+K DVNG++A+ V+ YLKSQK   +  + I
Sbjct: 65  CNQFGKQEPGSDEQITEFCQLNYGVTFPIMKKIDVNGSNADSVYNYLKSQKAGLLGFKGI 124

Query: 510 KWNFEKFLVDKSGQVVARFSSMATPASLAPEIEKVLN 620
           KWNFEKFLVD +G+VV RFSS+  P+SL  EI+ +L+
Sbjct: 125 KWNFEKFLVDSNGKVVQRFSSLTKPSSLDQEIQSLLS 161



EST assemble image


clone accession position
1 HC010b06_r AV632595 1 613
2 LC038g10_r AV621635 72 631
3 LC092g12_r AV625453 75 545
4 LC050c05_r AV622479 76 622
5 LC037b12_r AV621519 80 533
6 HC099c02_r AV639427 90 505
7 MXL059h03_r BP096509 90 491
8 MX056a03_r BP088275 90 525
9 MXL014f10_r BP093849 92 584
10 MX204f04_r BP089301 92 531
11 HC032b06_r AV634340 95 399
12 LC043h01_r AV622010 104 622
13 MX037h08_r BP087581 116 627
14 MXL083f03_r BP097923 119 550
15 LC024h06_r AV620646 205 758
16 CM041f06_r AV389446 276 850
17 MX052d12_r BP088131 645 954
18 MXL100c03_r BP098855 645 994




Chlamydomonas reinhardtii
Kazusa DNA Research Institute