KCC001364A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001364A_C02 KCC001364A_c02
ttcTGCTTGTCAATACTCCATTTAAATTGATTGCAGCGAGTCAGTGTGACTGTGCGGTCT
AACTTGTCCAAAACCAGCGCTTATTTCTGCTCAACTGTTTTTCTACTGTTATCTCCGTTT
GCTAAATCTTATTTCGCGTTTAAACGGGGAAGGCAGCCGACGTGCGGAGCAGCCTCGCGC
GGTCTTGCCGGGCGCGTGAAGAGCCATGGCGAAGCATCACCCAGATCTTATTATGTGCAT
GAAGCAGCCAGGCGTGGCCATTGGCCGCCTCTGCGAGAAGGATGATGGAAAGTGCCCAAT
TTGCGACTCCTATGTGCGCCCGTGCACCCTGGTACGCGTGTGCGACGAGTGCAACTACGG
ATCTTACGAGGGCCGCTGCGTCATCTGCGGCGGGATAGGCATTTCGGACGCCTACTACTG
CAAGGAGTGCACGTTGCAAGAAAAGGACAGAGACGGCTGCCCAAAGATCATCAACCTCGG
CTCCGCTAAAACCGACTTATTCTACGAGCGGAAGAAGTACGGGTTCAAGAAGCGGTAGCA
CCGCCCGCGGAGTCCGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001364A_C02 KCC001364A_c02
         (557 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAE04842.1| OSJNBa0084K01.14 [Oryza sativa (japonica cultiva...   229  1e-59
ref|NP_563782.1| expressed protein [Arabidopsis thaliana] gi|184...   229  2e-59
ref|NP_609038.1| CG9548-PA [Drosophila melanogaster] gi|33302634...   225  4e-58
gb|AAM75082.1| RH02789p [Drosophila melanogaster]                     224  8e-58
ref|NP_116147.1| SF3b14b; PHD-finger 5a [Homo sapiens] gi|203020...   224  8e-58

>emb|CAE04842.1| OSJNBa0084K01.14 [Oryza sativa (japonica cultivar-group)]
          Length = 110

 Score =  229 bits (585), Expect = 1e-59
 Identities = 101/110 (91%), Positives = 106/110 (95%)
 Frame = +2

Query: 206 MAKHHPDLIMCMKQPGVAIGRLCEKDDGKCPICDSYVRPCTLVRVCDECNYGSYEGRCVI 385
           MAKHHPDLIMC KQPG+AIGRLCEK DGKC ICDSYVRPCTLVRVCDECNYGS++GRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 386 CGGIGISDAYYCKECTLQEKDRDGCPKIINLGSAKTDLFYERKKYGFKKR 535
           CGG+GISDAYYCKECT QEKDRDGCPKI+NLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

>ref|NP_563782.1| expressed protein [Arabidopsis thaliana]
           gi|18402218|ref|NP_565691.1| expressed protein
           [Arabidopsis thaliana] gi|10720318|sp|O80873|U123_ARATH
           Hypothetical UPF0123 protein At1g07170/At2g30000
           gi|7486045|pir||T02485 hypothetical protein At2g30000
           [imported] - Arabidopsis thaliana
           gi|3420051|gb|AAC31852.1| expressed protein [Arabidopsis
           thaliana] gi|21593073|gb|AAM65022.1| unknown
           [Arabidopsis thaliana] gi|21618034|gb|AAM67084.1|
           unknown [Arabidopsis thaliana]
           gi|26451992|dbj|BAC43086.1| unknown protein [Arabidopsis
           thaliana] gi|28416819|gb|AAO42940.1| At2g30000
           [Arabidopsis thaliana] gi|30793845|gb|AAP40375.1|
           unknown protein [Arabidopsis thaliana]
           gi|30794025|gb|AAP40459.1| unknown protein [Arabidopsis
           thaliana]
          Length = 110

 Score =  229 bits (584), Expect = 2e-59
 Identities = 100/110 (90%), Positives = 106/110 (95%)
 Frame = +2

Query: 206 MAKHHPDLIMCMKQPGVAIGRLCEKDDGKCPICDSYVRPCTLVRVCDECNYGSYEGRCVI 385
           MAKHHPDLIMC KQPG+AIGRLCEK DGKC ICDSYVRPCTLVR+CDECNYGS++GRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 386 CGGIGISDAYYCKECTLQEKDRDGCPKIINLGSAKTDLFYERKKYGFKKR 535
           CGG+GISDAYYCKECT QEKDRDGCPKI+NLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

>ref|NP_609038.1| CG9548-PA [Drosophila melanogaster]
           gi|33302634|sp|Q9VMC8|U123_DROME Hypothetical UPF0123
           protein CG9548 gi|22945771|gb|AAF52393.2| CG9548-PA
           [Drosophila melanogaster]
          Length = 111

 Score =  225 bits (573), Expect = 4e-58
 Identities = 97/109 (88%), Positives = 104/109 (94%)
 Frame = +2

Query: 206 MAKHHPDLIMCMKQPGVAIGRLCEKDDGKCPICDSYVRPCTLVRVCDECNYGSYEGRCVI 385
           MAKHHPDLI C KQPGVAIGRLCEKDDGKC ICDSYVRPCTLVR+CDECNYGSY+GRCVI
Sbjct: 1   MAKHHPDLIFCRKQPGVAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 386 CGGIGISDAYYCKECTLQEKDRDGCPKIINLGSAKTDLFYERKKYGFKK 532
           CGG G+SDAYYCK CT+QEKDRDGCPKI+NLGS+KTDLFYERKKYGFK+
Sbjct: 61  CGGPGVSDAYYCKSCTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKQ 109

>gb|AAM75082.1| RH02789p [Drosophila melanogaster]
          Length = 111

 Score =  224 bits (570), Expect = 8e-58
 Identities = 96/109 (88%), Positives = 104/109 (95%)
 Frame = +2

Query: 206 MAKHHPDLIMCMKQPGVAIGRLCEKDDGKCPICDSYVRPCTLVRVCDECNYGSYEGRCVI 385
           MAKHHPDLI C KQPGVAIGRLCEKDDGKC ICDSYVRPCTLVR+CDECNYGSY+GRCVI
Sbjct: 1   MAKHHPDLIFCRKQPGVAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 386 CGGIGISDAYYCKECTLQEKDRDGCPKIINLGSAKTDLFYERKKYGFKK 532
           CGG G+SDAYYCK CT+QEKDRDGCPKI+NLGS+KTDLFYERKKYGF++
Sbjct: 61  CGGPGVSDAYYCKSCTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFRQ 109

>ref|NP_116147.1| SF3b14b; PHD-finger 5a [Homo sapiens] gi|20302071|ref|NP_620243.1|
           transcription factor INI [Rattus norvegicus]
           gi|24415990|ref|NP_081013.1| PHF5A [Mus musculus]
           gi|27545283|ref|NP_775373.1| PHD finger protein 5A
           [Danio rerio] gi|10720333|sp|Q9UH06|U123_HUMAN
           Hypothetical UPF0123 protein BK223H9.2/MGC1346
           gi|6572198|emb|CAB62939.1| bK223H9.2 (ortholog of A.
           thaliana F23F1.8) [Homo sapiens]
           gi|12834235|dbj|BAB22833.1| unnamed protein product [Mus
           musculus] gi|13938376|gb|AAH07321.1| SF3b14b [Homo
           sapiens] gi|19263793|gb|AAH25161.1| PHF5A [Mus musculus]
           gi|20162519|gb|AAM14623.1|AF495522_1 transcription
           factor INI [Rattus norvegicus]
           gi|20977587|gb|AAM28221.1| MCG1346-like protein [Danio
           rerio] gi|21360842|gb|AAM49735.1|AF479286_1 PHF5A [Mus
           musculus] gi|21360845|gb|AAM49736.1|AF479288_1 PHF5A
           [Mus musculus] gi|23336898|tpg|DAA00074.1| TPA: SF3b14b
           [Homo sapiens] gi|28278016|gb|AAH46093.1| Similar to PHD
           finger protein 5A [Danio rerio]
          Length = 110

 Score =  224 bits (570), Expect = 8e-58
 Identities = 98/110 (89%), Positives = 104/110 (94%)
 Frame = +2

Query: 206 MAKHHPDLIMCMKQPGVAIGRLCEKDDGKCPICDSYVRPCTLVRVCDECNYGSYEGRCVI 385
           MAKHHPDLI C KQ GVAIGRLCEK DGKC ICDSYVRPCTLVR+CDECNYGSY+GRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 386 CGGIGISDAYYCKECTLQEKDRDGCPKIINLGSAKTDLFYERKKYGFKKR 535
           CGG G+SDAYYCKECT+QEKDRDGCPKI+NLGS+KTDLFYERKKYGFKKR
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110



EST assemble image


clone accession position
1 CM041d08_r AV389382 1 214
2 MXL068g03_r BP097016 6 472
3 LC056e07_r AV622918 24 557




Chlamydomonas reinhardtii
Kazusa DNA Research Institute