KCC001356A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001356A_C01 KCC001356A_c01
TTCGGCCGTGTGGAGGTGCAGGTGCCGGACGCTGGCGGCAATCTCATCTGGGCGCCCCTG
TGCCCGGCCTTCGACGGTGACGAGTCGTTCGTGGCAGACGTGGCGTGCAAGCAGGCGTTT
GACTGGCCCGATAAACCCAAGCCCTCTTTCTTTGTCAGCGGCAACCCGTTGCTGCCAGGC
TGGACCATTCCTACAAGCCCGGTGACCAACGCAGCGTACTTCAACCCAGCCGCGTACACG
GGCTGGGCGTCCATTGTGGGCGGCGACGTGACCACCGCCCTCTCCCTTCAGGAGCTGGAC
CTGCAGGTGACGACCGAGCCCTGCCCGACCGGCTACATGTTCGCCGTGTACTGCCAGATT
AGCATGTAGGAGGTTTCAATATATGTTGTAGCTTGCTTTCAAGTGGCTTTGCGTATCTAC
ATAGGCGTGCGGTTCCCCGGCAGCACGAGGCTCCCAGACGTGTGGGCGCCATGCAGCCGC
CAGAAGCATTCATTTTAATACGCGCGCTAGGCATTCATCTCTCCTTTCTTAAAAGTTGGG
CCCAAATGCTAAGTTGAATTGAAAATTGAAACAAATGTTGTACAAATGTTTGCAGCAGTT
GCAGTGGCCCGTCCGTTAGCAGCGTGTTGTGCACCAGCGGAGTGTGCTTTTTTGTGTCCC
AACATAGAGGCGTGTGCTTAGTAGGCGCCCGCGTCAAGGTGGCTGGGTTGATAACGACCC
GGGATCAGCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001356A_C01 KCC001356A_c01
         (731 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_029703.2| similar to KIAA1423 protein [Homo sapiens]            41  0.017
gb|AAP06903.1| hypothetical protein [Oryza sativa (japonica cult...    40  0.037
ref|NP_294953.1| hypothetical protein [Deinococcus radiodurans] ...    40  0.049
gb|AAB70928.1| proline rich protein [Santalum album]                   38  0.14
ref|NP_787286.1| unknown [Tropheryma whipplei str. Twist] gi|284...    38  0.19

>ref|XP_029703.2| similar to KIAA1423 protein [Homo sapiens]
          Length = 680

 Score = 41.2 bits (95), Expect = 0.017
 Identities = 32/97 (32%), Positives = 41/97 (41%), Gaps = 20/97 (20%)
 Frame = +2

Query: 125 GPINPSPLSLSAATRCCQAGP----------FLQAR*PTQRTSTQPRTRAGRPLWAAT*P 274
           G +N  PLSLS  T CC + P          + + R     + TQ  +R G P       
Sbjct: 33  GTLNQIPLSLSCTTLCCTSSPAFCLSRGGGGWARRRMGAAPSPTQASSRGGGP------G 86

Query: 275 PPSPFRSWTCR*R----------PSPARPATCSPCTA 355
           PP+P R+ +   R          PSPARP T SP  A
Sbjct: 87  PPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPA 123

>gb|AAP06903.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
           gi|29893659|gb|AAP06913.1| hypothetical protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 420

 Score = 40.0 bits (92), Expect = 0.037
 Identities = 53/179 (29%), Positives = 78/179 (42%), Gaps = 10/179 (5%)
 Frame = -2

Query: 508 SARIKMNASGGCMAPTRLGASCCRGTARLCRYAKPLESKLQHILKPPTC*SGSTRRTCSR 329
           +AR +++A GG  + T+   +   G+A   R A+   + ++H    PT  S  + R   R
Sbjct: 115 TARQRLDA-GGRSSATKASGAATTGSASSRRRARRAAAAVRHSAATPT--STPSTREDLR 171

Query: 328 SGRARSSPAGPAPEGRGRWSRRRPQWTPSPCTRLG*STLRWSP--GL*EWSSLAATGCR* 155
            G          P+ R    RRR     +  T  G S+ R SP  G  +  S+   G R 
Sbjct: 172 GG----------PDARTSIERRRNDRRAAHTTE-GASSSRVSPHHGRGDQPSVPPVGGRA 220

Query: 154 QRKRAWVYRASQTPACTPRLPRTTRH-------RRRPGTGAPR*DCRQ-RPAPAPPHGR 2
               A    + ++P  +PRLPR+          RRRPG G P     Q RP+P PP G+
Sbjct: 221 CGTTAC---SKRSPPRSPRLPRSFFSSRTEWLARRRPGLGTPPIPVWQLRPSPGPPLGQ 276

>ref|NP_294953.1| hypothetical protein [Deinococcus radiodurans]
           gi|7472709|pir||F75420 hypothetical protein -
           Deinococcus radiodurans (strain R1)
           gi|6458982|gb|AAF10810.1|AE001971_10 hypothetical
           protein [Deinococcus radiodurans]
          Length = 319

 Score = 39.7 bits (91), Expect = 0.049
 Identities = 36/109 (33%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
 Frame = +2

Query: 62  ARPSTVTSRSWQT--WRASRRLTGPINPS-PLSLSAATR--CCQAGPFLQAR*PTQRTST 226
           ARPS  + R+  T  W A+   + P  PS P S+ A TR  CC   P   A      T  
Sbjct: 208 ARPSVSSGRATSTRCWPAASANSVPKPPSSPRSVRAGTRWGCCTWTPGAPAAPRATTTRN 267

Query: 227 QPRTRAGRPLWAAT*PPPSPFRSWTCR*RPSPARPATC--SPCTARLAC 367
                  R +W  T P  +P R  + R     ARPA C  + CT    C
Sbjct: 268 SCSHSPSRRVWRLTTPGSTPSRPASARPPRRCARPAPCWRAACTCPTRC 316

>gb|AAB70928.1| proline rich protein [Santalum album]
          Length = 326

 Score = 38.1 bits (87), Expect = 0.14
 Identities = 35/101 (34%), Positives = 47/101 (45%)
 Frame = +2

Query: 56  PCARPSTVTSRSWQTWRASRRLTGPINPSPLSLSAATRCCQAGPFLQAR*PTQRTSTQPR 235
           P  RPS+ TS    T   + R  GP +PSP   S     C   P    + P+   S+ PR
Sbjct: 154 PTPRPSSPTSTP-PTDGETPRPPGPRSPSP---SPGPPSCSPSP----KSPSPPASSPPR 205

Query: 236 TRAGRPLWAAT*PPPSPFRSWTCR*RPSPARPATCSPCTAR 358
           +R G P +  +  PP+P RS        P  PA+ SP TA+
Sbjct: 206 SRPGPPDYTTSPSPPTP-RS------VPPTPPASPSPPTAK 239

>ref|NP_787286.1| unknown [Tropheryma whipplei str. Twist] gi|28476165|gb|AAO44255.1|
           unknown [Tropheryma whipplei str. Twist]
          Length = 100

 Score = 37.7 bits (86), Expect = 0.19
 Identities = 27/87 (31%), Positives = 36/87 (41%)
 Frame = +2

Query: 86  RSWQTWRASRRLTGPINPSPLSLSAATRCCQAGPFLQAR*PTQRTSTQPRTRAGRPLWAA 265
           R   T +  R LT P  P    L+AA    +     Q    T  +STQ  ++A  P  AA
Sbjct: 7   RDCDTLQLLRALTAPAKPVAAKLAAAQPSAKPSRATQPAAATHSSSTQAPSQASAPKPAA 66

Query: 266 T*PPPSPFRSWTCR*RPSPARPATCSP 346
             P P+         +P+PA PA   P
Sbjct: 67  AKPAPA---------KPAPAAPAAAKP 84



EST assemble image


clone accession position
1 LC075f10_r AV624291 1 509
2 LC034f11_r AV621344 1 468
3 LC074a11_r AV624182 5 507
4 CM040d05_r AV389189 173 731




Chlamydomonas reinhardtii
Kazusa DNA Research Institute