Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001352A_C01 KCC001352A_c01
(776 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_608607.1| CG14351-PA [Drosophila melanogaster] gi|7296061... 33 6.7
gb|AAF71783.1|AF263912_22 ORF2 [Streptomyces noursei] 32 8.7
sp|Q01978|TFE2_XENLA Transcription factor E2-alpha (Transcriptio... 32 8.7
>ref|NP_608607.1| CG14351-PA [Drosophila melanogaster] gi|7296061|gb|AAF51357.1|
CG14351-PA [Drosophila melanogaster]
Length = 1316
Score = 32.7 bits (73), Expect = 6.7
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 10/123 (8%)
Frame = -3
Query: 615 CPSASITVPRSMYYHKGGALPSGH--NSSSHVGSFTSCVLPQSQAMPWKRQVPCHSHSRL 442
C S VPR+ +H +GH NS+SH S +S S + ++Q P + +
Sbjct: 1062 CTSPPDVVPRAANFHNSNTTSTGHNDNSNSHGSSSSS-----SSNIAQQQQAPLAAMTAA 1116
Query: 441 FADRLSHTSTSLPAAVNDKRSVV--------RVSAFLLEVTTR*RSAAPRSTAQPKDTRH 286
D + + + AA + VV R T+R RS++ S+ TRH
Sbjct: 1117 LGDATAAATAAAAAAASASGIVVENYFNEYERQEIIYHHPTSR-RSSSSSSSCSAAATRH 1175
Query: 285 FKR 277
R
Sbjct: 1176 VPR 1178
>gb|AAF71783.1|AF263912_22 ORF2 [Streptomyces noursei]
Length = 354
Score = 32.3 bits (72), Expect = 8.7
Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Frame = -3
Query: 480 WK-RQVPCHSHSRLFADRLSHTSTSLPAAVNDKRSVVRVSAFLLEVTTR*RSAAPRSTAQ 304
W+ R + H +RL AD H T PA V D+ V+A ++ R+ A + A
Sbjct: 157 WRLRALGRHQVARLAADASRHR-TDTPAFVLDELDQQLVTALSVDGRATYRALAEQCGAG 215
Query: 303 PKDTRH-FKR*QNTTRYLVVLNAALPISHVPAVTVLSGGPVQSAACCSGTRRKTPPLQGM 127
P R +R A P+S P VTV G V +A TRR T +
Sbjct: 216 PDTVRRRVQRLFAADMLHARCEVARPLSEWP-VTVSFWGQVPAARLREVTRRVTGMREVR 274
Query: 126 LSHRAVPRASLHL 88
L + R +LHL
Sbjct: 275 LCASVISRHNLHL 287
>sp|Q01978|TFE2_XENLA Transcription factor E2-alpha (Transcription factor XE12/XE47)
gi|283796|pir||S23391 transcription factor E12 - African
clawed frog gi|65224|emb|CAA47381.1| DNA binding protein
E12 [Xenopus laevis] gi|28422166|gb|AAH46840.1| Unknown
(protein for MGC:52608) [Xenopus laevis]
Length = 658
Score = 32.3 bits (72), Expect = 8.7
Identities = 39/132 (29%), Positives = 51/132 (38%)
Frame = -3
Query: 603 SITVPRSMYYHKGGALPSGHNSSSHVGSFTSCVLPQSQAMPWKRQVPCHSHSRLFADRLS 424
+I V RS + GALP GH+ + S T+ VL P + HS L S
Sbjct: 388 AIHVLRSHAVGQTGALPGGHDDIHSLLSATASVL--GSGFPAAVLSLANRHSML----NS 441
Query: 423 HTSTSLPAAVNDKRSVVRVSAFLLEVTTR*RSAAPRSTAQPKDTRHFKR*QNTTRYLVVL 244
HT +LP+A N S V V AQP R Q++ L L
Sbjct: 442 HTEEALPSASNMLHSQVTV------------------PAQPGSLPDLTRPQDSYSGLPGL 483
Query: 243 NAALPISHVPAV 208
A+P VP +
Sbjct: 484 GRAIPPGRVPDI 495
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 839,499,516
Number of Sequences: 1537769
Number of extensions: 19584229
Number of successful extensions: 46553
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46509
length of database: 498,525,298
effective HSP length: 121
effective length of database: 312,455,249
effective search space used: 42806369113
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
